BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4372.p (540 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777106.1| methyl-accepting chemotaxis transducer trans... 678 0.0 ref|YP_003776875.1| methyl-accepting chemotaxis transducer trans... 632 e-179 ref|YP_003775129.1| methyl-accepting chemotaxis transducer trans... 475 e-132 ref|YP_003777983.1| methyl-accepting chemotaxis I protein [Herba... 456 e-126 ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemor... 432 e-119 >ref|YP_003777106.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65198.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 449/545 (82%), Positives = 488/545 (89%), Gaps = 5/545 (0%) Query: 1 MTALRNMKIGTKLALAFAALLMLTFLLAGIALSSINSLTVSIKAADAVQDERLVPLYLAR 60 M+ +NMKIGTKL+L FA LL LT +LAGI+L SIN LT SIKAAD VQ ERL+PLYLAR Sbjct: 9 MSGFKNMKIGTKLSLGFALLLTLTIILAGISLFSINRLTGSIKAADDVQVERLLPLYLAR 68 Query: 61 EALDQTGLAARNAYVFRTDADAQKELAIVDEQKQLYLKALKDMEPHFAGNKGFEKVRAGL 120 EALDQTGLAARNAYVFRT+ADAQKELAIVDEQKQ+YLKALKDMEPHF G+KGF+KVR GL Sbjct: 69 EALDQTGLAARNAYVFRTEADAQKELAIVDEQKQIYLKALKDMEPHFVGHKGFDKVRTGL 128 Query: 121 LQMAEELKRPRIYREGGKSEEFRDFLVNECSPLRRQIVLDINKLIAEVDAENDKAHEDTI 180 LQMAEELKRPRIYRE GK EEFRDFLVNECSPLRRQIVLDINK+I E DA+N KAH+ T+ Sbjct: 129 LQMAEELKRPRIYRESGKMEEFRDFLVNECSPLRRQIVLDINKVIEEADADNIKAHQTTV 188 Query: 181 AMASKASVVVAVLTIIVALISALVAFAITRGLLKQLGGEPAYAADIAQQIAAGDLTSEVN 240 MA+ AS +VAVLT IVA+ISALVAF ITR LLKQLGGEPAYAADIAQQIA+GDLT++V+ Sbjct: 189 DMAAMASSLVAVLTGIVAVISALVAFVITRSLLKQLGGEPAYAADIAQQIASGDLTADVD 248 Query: 241 VKAGDTTSLLFAIKKMRDSLVGIVGRVREGTQAIEQASTEIATGNLDLSARTEQQAGALE 300 K GDTTSLLFAIKKMRD+L IVG+VREGT AIEQAS EIATGN+DLS+RTEQQAGALE Sbjct: 249 AKPGDTTSLLFAIKKMRDNLAAIVGKVREGTHAIEQASAEIATGNMDLSSRTEQQAGALE 308 Query: 301 ETASAMEELMSTVKQNADNAKQASELAVSASDVATQGGEVVGKVVSTMEGINASSRKIVD 360 ETASAMEELMSTVKQNADNA+QAS+LAVSASDVA+QGG+VVG+VVSTMEGINASSRKIVD Sbjct: 309 ETASAMEELMSTVKQNADNARQASQLAVSASDVASQGGQVVGQVVSTMEGINASSRKIVD 368 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELIND 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIT+LIND Sbjct: 369 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITDLIND 428 Query: 421 SVAQIAQGSSLVEQAGMTMENVVTSVKRVTDVVAEISHASQEQSHGITQVNLAITHMDEA 480 SV QI QGSSLV QAG TMENVVTSVKRVTDVVAEISHASQEQSHGI QVNLAITHMDEA Sbjct: 429 SVGQIEQGSSLVGQAGATMENVVTSVKRVTDVVAEISHASQEQSHGIAQVNLAITHMDEA 488 Query: 481 TQQNSALVEEAAAAANAMMEQAGELAGLVSTFKLDDAKGFATVTGI-----GRNKVAVVR 535 TQQNSALVEEAAAAAN+M QA +LAGLVSTFKL + V+ + R + V R Sbjct: 489 TQQNSALVEEAAAAANSMKTQAEQLAGLVSTFKLAHSPAPGPVSAVVGAMGRRANLPVGR 548 Query: 536 ALALR 540 +LAL+ Sbjct: 549 SLALK 553 >ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64967.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 408/512 (79%), Positives = 462/512 (90%) Query: 4 LRNMKIGTKLALAFAALLMLTFLLAGIALSSINSLTVSIKAADAVQDERLVPLYLAREAL 63 ++MKIGTKLAL F AL++LT L++GI+LSSI +LT SIKA AVQD++L PLY AREAL Sbjct: 2 FKHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQKLAPLYAAREAL 61 Query: 64 DQTGLAARNAYVFRTDADAQKELAIVDEQKQLYLKALKDMEPHFAGNKGFEKVRAGLLQM 123 DQTG+AARNAYVFR+DADAQKELAIVDEQKQLYLKA+KD+ P FAGNK FEKVR+G+LQM Sbjct: 62 DQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKDLGPLFAGNKEFEKVRSGMLQM 121 Query: 124 AEELKRPRIYREGGKSEEFRDFLVNECSPLRRQIVLDINKLIAEVDAENDKAHEDTIAMA 183 AEELKRPR+YRE G+SEE+RDFLVNECSPLRRQIV DI ++A+V+AEN++A + T MA Sbjct: 122 AEELKRPRLYRESGRSEEYRDFLVNECSPLRRQIVSDIGTVLAQVEAENNRAQDATDKMA 181 Query: 184 SKASVVVAVLTIIVALISALVAFAITRGLLKQLGGEPAYAADIAQQIAAGDLTSEVNVKA 243 A++ VAVLT++V +IS L+A +TRGLLKQLGGEP YAA IAQQIA GDLT+ V K Sbjct: 182 QLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKT 241 Query: 244 GDTTSLLFAIKKMRDSLVGIVGRVREGTQAIEQASTEIATGNLDLSARTEQQAGALEETA 303 GD +SLLFAIK MRDSLV IV +VR+GT IEQAS+EIA+GNLDLS+RTEQQA +LEETA Sbjct: 242 GDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETA 301 Query: 304 SAMEELMSTVKQNADNAKQASELAVSASDVATQGGEVVGKVVSTMEGINASSRKIVDIIS 363 SAMEELM+TVKQNADNAKQAS+LAVSAS+VA+QGGEVV +VV+TM+GINASSRKIVDIIS Sbjct: 302 SAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIIS 361 Query: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVA 423 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSV+ Sbjct: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVS 421 Query: 424 QIAQGSSLVEQAGMTMENVVTSVKRVTDVVAEISHASQEQSHGITQVNLAITHMDEATQQ 483 QI +GSSLVEQAG TMENVV SVKRVTDVVAEIS ASQEQSHGITQVN AITHMDEATQQ Sbjct: 422 QIERGSSLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQ 481 Query: 484 NSALVEEAAAAANAMMEQAGELAGLVSTFKLD 515 NSALVEEAAAAAN+M EQAG L+GLV+TF+LD Sbjct: 482 NSALVEEAAAAANSMKEQAGALSGLVATFRLD 513 >ref|YP_003775129.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63221.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 319/514 (62%), Positives = 400/514 (77%) Query: 1 MTALRNMKIGTKLALAFAALLMLTFLLAGIALSSINSLTVSIKAADAVQDERLVPLYLAR 60 M L MKIG KL+L FA+ L+L L A+ INSL +I A+ +++E+L PLYLAR Sbjct: 1 MKVLSEMKIGVKLSLGFASQLLLLLALVAAAMLGINSLRETIVYANKLKNEQLEPLYLAR 60 Query: 61 EALDQTGLAARNAYVFRTDADAQKELAIVDEQKQLYLKALKDMEPHFAGNKGFEKVRAGL 120 EALDQTG+AARNAYVF +DADA+ EL IVDEQK +YL+ L+ +EP A GF VR GL Sbjct: 61 EALDQTGIAARNAYVFVSDADAKNELNIVDEQKAIYLQQLQLLEPRLADRAGFAAVREGL 120 Query: 121 LQMAEELKRPRIYREGGKSEEFRDFLVNECSPLRRQIVLDINKLIAEVDAENDKAHEDTI 180 LQMAEELKRPR YR+ G E +RDFLVNECSPLRR+IV +IN+LI ++ AE+ A + Sbjct: 121 LQMAEELKRPRRYRDSGAMEAYRDFLVNECSPLRRKIVANINQLIDQISAESTTAGDTAE 180 Query: 181 AMASKASVVVAVLTIIVALISALVAFAITRGLLKQLGGEPAYAADIAQQIAAGDLTSEVN 240 A +A + +++L + LI+ ++AF ITR LL+QLGGEPAYA IAQ+IA GDL +V Sbjct: 181 NAAKQALLFISLLAGLALLIAVVIAFFITRSLLRQLGGEPAYAMGIAQRIAHGDLAVDVV 240 Query: 241 VKAGDTTSLLFAIKKMRDSLVGIVGRVREGTQAIEQASTEIATGNLDLSARTEQQAGALE 300 ++ D +SLL+AIK MRDSL IV +VR+GT +IE+A +EI++GN DLS RTE+QA +LE Sbjct: 241 TRSHDQSSLLYAIKMMRDSLSRIVAQVRQGTDSIERACSEISSGNADLSGRTERQASSLE 300 Query: 301 ETASAMEELMSTVKQNADNAKQASELAVSASDVATQGGEVVGKVVSTMEGINASSRKIVD 360 ETASAME++ S V+Q+ADNA QA++LA SAS +A +GG+++G VV+TME I+ SS KIVD Sbjct: 301 ETASAMEQITSAVRQSADNAIQANQLAGSASSIALKGGQMMGDVVATMEDIHHSSVKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELIND 420 IISVIDGIAFQTNILALNAAVEAARAGE GRGFAVVASEVR+LAQRSA AAKEI ELI+ Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEGGRGFAVVASEVRTLAQRSAAAAKEIKELISA 420 Query: 421 SVAQIAQGSSLVEQAGMTMENVVTSVKRVTDVVAEISHASQEQSHGITQVNLAITHMDEA 480 SVA++ GS LV+ AG TM +V SV+ V+ V+AEI+ +S+EQS GI QVN AI+HMDE Sbjct: 421 SVAKVESGSGLVKGAGETMGELVGSVQNVSKVIAEITASSREQSTGIEQVNDAISHMDEV 480 Query: 481 TQQNSALVEEAAAAANAMMEQAGELAGLVSTFKL 514 TQQNSALVE++AAAA A+ QA LA LVSTFK+ Sbjct: 481 TQQNSALVEQSAAAAEALTAQAQSLARLVSTFKV 514 >ref|YP_003777983.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] gb|ADJ66075.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 299/518 (57%), Positives = 377/518 (72%) Query: 1 MTALRNMKIGTKLALAFAALLMLTFLLAGIALSSINSLTVSIKAADAVQDERLVPLYLAR 60 M L +KIGT+L L F +++L +L AL +N+++ +++ + V D +L PLY+AR Sbjct: 1 MNQLSKLKIGTQLRLGFGIVIVLMLILITFALMRMNAISAAVQYQETVTDTKLEPLYVAR 60 Query: 61 EALDQTGLAARNAYVFRTDADAQKELAIVDEQKQLYLKALKDMEPHFAGNKGFEKVRAGL 120 EALDQTGLAARNAY+F A+A KELA++D+QK LYL AL+ +EP AG FEK +AGL Sbjct: 61 EALDQTGLAARNAYIFHDQAEALKELALLDQQKALYLDALRQLEPVLAGQAQFEKAKAGL 120 Query: 121 LQMAEELKRPRIYREGGKSEEFRDFLVNECSPLRRQIVLDINKLIAEVDAENDKAHEDTI 180 L MAEELKRPR YRE G+ E + +FLV ECSPLRRQIV DI+ L+ V E A + Sbjct: 121 LAMAEELKRPRKYRESGQMEAYGEFLVKECSPLRRQIVQDIDALLKVVQRETKAAGDRAD 180 Query: 181 AMASKASVVVAVLTIIVALISALVAFAITRGLLKQLGGEPAYAADIAQQIAAGDLTSEVN 240 A+ + + ++ I+ +S A+ I + LL QLGGEP YA +I +IA G+L++ V+ Sbjct: 181 ALFASSLRLIMACAAIILGVSIATAWLIRKSLLGQLGGEPRYAVEITGRIAHGELSAPVD 240 Query: 241 VKAGDTTSLLFAIKKMRDSLVGIVGRVREGTQAIEQASTEIATGNLDLSARTEQQAGALE 300 GD +SLL+ I+ MRD L +V +VR GT AI AS+EIA GN +LS RTEQQA LE Sbjct: 241 TAPGDRSSLLYEIRVMRDKLASLVQQVRVGTHAIADASSEIAVGNQNLSERTEQQADTLE 300 Query: 301 ETASAMEELMSTVKQNADNAKQASELAVSASDVATQGGEVVGKVVSTMEGINASSRKIVD 360 +T +AM+EL V++NADNA+QA LA SASDVA+Q G VV +VV TM I+ASSRKIVD Sbjct: 301 KTVAAMDELTQAVRRNADNAQQAKHLAGSASDVASQAGTVVQQVVDTMGQIDASSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELIND 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AA+EI LI+ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSASAAREIKSLIDS 420 Query: 421 SVAQIAQGSSLVEQAGMTMENVVTSVKRVTDVVAEISHASQEQSHGITQVNLAITHMDEA 480 SV+ + GS LVEQAG TM++VV SV+RV+ VV EIS ASQ QS GI +VN AI +DE Sbjct: 421 SVSSVTDGSRLVEQAGATMQDVVESVQRVSAVVVEISAASQAQSDGILEVNTAIARLDEN 480 Query: 481 TQQNSALVEEAAAAANAMMEQAGELAGLVSTFKLDDAK 518 TQQN+ALVEEAAAA+ +M +QA L LV FKL A+ Sbjct: 481 TQQNAALVEEAAAASQSMSQQADHLNQLVGAFKLSPAQ 518 >ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] gb|ABR90626.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 295/511 (57%), Positives = 369/511 (72%), Gaps = 5/511 (0%) Query: 6 NMKIGTKLALAFAALLMLTFLLAGIALSSINSLTVSIKAADAVQDERLVPLYLAREALDQ 65 NMK+G+KL+L F +LT L+A AL IN + I + ++ ++L LY AREAL Q Sbjct: 4 NMKVGSKLSLGFGVTALLTLLIAVFALMRINQIDGVIATQNEIRTQQLERLYTAREALGQ 63 Query: 66 TGLAARNAYVFRTDADAQKELAIVDEQKQLYLKALKDMEPHFAGNKGFEKVRAGLLQMAE 125 TGLAARNAY+F ADA KEL I+DEQK +YL AL M P F G+ FEKV GLL MAE Sbjct: 64 TGLAARNAYIFTNKADALKELDILDEQKAIYLDALAKMTPFFKGDANFEKVSKGLLTMAE 123 Query: 126 ELKRPRIYREGGKSEEFRDFLVNECSPLRRQIVLDINKLIAEVDAENDKAHEDTIAMASK 185 ELKRPR +R+ + E F FLVNECSPLRRQIV DI ++ + D ++ A + Sbjct: 124 ELKRPRQFRDADQMEAFGKFLVNECSPLRRQIVADIGTVVTSMQKIVDVKSQEANLAAQQ 183 Query: 186 ASVVVAVLTIIVALISALVAFAITRGLLKQLGGEPAYAADIAQQIAAGDLTSEVNVKAGD 245 + ++ ++ + L+S + I+R + + L A +AQ +A+GDLTS++NVK+ D Sbjct: 184 SITIIIAISAVALLLSIGLGIVISRSITRPLN----EAVLVAQTVASGDLTSQINVKSKD 239 Query: 246 TT-SLLFAIKKMRDSLVGIVGRVREGTQAIEQASTEIATGNLDLSARTEQQAGALEETAS 304 T LL A+K M SL+GIV VR GT + AS +IA+GN+DLS+RTE+QA +LEETAS Sbjct: 240 ETGQLLQALKDMNQSLIGIVDEVRSGTATMATASNQIASGNMDLSSRTEEQASSLEETAS 299 Query: 305 AMEELMSTVKQNADNAKQASELAVSASDVATQGGEVVGKVVSTMEGINASSRKIVDIISV 364 +MEEL STVKQNADNA+QA+ L++SAS++A +GG+VV +VV TM GIN S++KI DII V Sbjct: 300 SMEELTSTVKQNADNARQANSLSLSASEIAVKGGQVVSEVVVTMNGINDSAKKITDIIGV 359 Query: 365 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVAQ 424 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEI LI+DSV + Sbjct: 360 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKALIDDSVGR 419 Query: 425 IAQGSSLVEQAGMTMENVVTSVKRVTDVVAEISHASQEQSHGITQVNLAITHMDEATQQN 484 + GS LV QAG TM VV SVKRVTD++AEI ASQEQS GI QVN AI MD TQQN Sbjct: 420 VDTGSKLVVQAGSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVTQQN 479 Query: 485 SALVEEAAAAANAMMEQAGELAGLVSTFKLD 515 +ALVEEAAAAA ++ +QA +L VS FK+D Sbjct: 480 AALVEEAAAAAGSLKDQAVKLEQTVSVFKID 510