BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4370.p         (246 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003656210.1| hypothetical protein Arnit_2049 [Arcobacter ...   117   1e-24

>ref|YP_003656210.1| hypothetical protein Arnit_2049 [Arcobacter nitrofigilis DSM 7299]
 gb|ADG93703.1| hypothetical protein Arnit_2049 [Arcobacter nitrofigilis DSM 7299]
          Length = 195

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 100/179 (55%), Gaps = 1/179 (0%)

Query: 66  CAAALVPKVDDPASKLKIAQDLFENHNRPLAAEPMIIDAIAIYQEKHDVAGLVEGQRVYG 125
           CAA  VP   DP  KLK A +L+ +  RP  AE +I +AI I QE ++   L +    YG
Sbjct: 17  CAAVGVPSTSDPIEKLKWADELY-SRGRPFPAEKLINEAIVICQENNNSECLGKAYLSYG 75

Query: 126 LFLRSAAVSGSKQHYLQYGFRDKEVSFDNRLSAALLYFERATALAREAGLVDIIPNLYVN 185
            FLRS ++  +  +Y +YGFR+ ++++DNR   +  YFE+A     +    D + N Y+N
Sbjct: 76  FFLRSPSIEKNHINYKKYGFRNSDITYDNRFIKSKEYFEKAIPEFLKIKSYDALTNAYLN 135

Query: 186 IALTHYAQGNKDATCTAFDESLHADDVRIQHDPQRKIILPREYASFREGVKDLKMKAGC 244
           +   +Y  G   + C  +  SL  +   ++ +PQ KI LP+ +++++E V   + +AGC
Sbjct: 136 LGFAYYFLGEHKSECEPYRLSLEYNKKNLEINPQAKISLPKGFSTYKEYVAIHQKRAGC 194