BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4365.p         (109 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_01093044.1| hypothetical protein DSM3645_18431 [Blastopir...   119   2e-25
ref|ZP_06645773.1| conserved hypothetical protein [Erysipelotric...   116   9e-25
ref|YP_003309410.1| hypothetical protein Sterm_2634 [Sebaldella ...   105   3e-21
ref|ZP_04578587.1| conserved hypothetical protein [Oxalobacter f...   104   3e-21
ref|NP_867102.1| hypothetical protein RB6170 [Rhodopirellula bal...   104   4e-21

>ref|ZP_01093044.1| hypothetical protein DSM3645_18431 [Blastopirellula marina DSM
           3645]
 gb|EAQ78341.1| hypothetical protein DSM3645_18431 [Blastopirellula marina DSM
           3645]
          Length = 261

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/107 (55%), Positives = 73/107 (68%), Gaps = 1/107 (0%)

Query: 1   MQNKKFKLSPHEIAPIVSGVGGCLATDRIVVDGCRVGYMFREKPMNEQDSGWRFFAGDED 60
           M  KKF L   +I  +V G GGC+ATDRI VDG  +GYM+RE P NE DSGWRFF+GDE 
Sbjct: 1   MTEKKFHLPADQIEALVEGQGGCIATDRITVDGMPIGYMYREPPDNEGDSGWRFFSGDES 60

Query: 61  EAYMARNEHHGVYDVNTIVNYDPTILPFVDLEIGSALERD-DAGDFV 106
           E Y+ +  +  VYDVNTI NYD  ++PF+   IGSA  R+ DAG  +
Sbjct: 61  EEYVDQARNLEVYDVNTIANYDRDVIPFLSSPIGSAYAREGDAGQLI 107


>ref|ZP_06645773.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gb|EFE46136.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 365

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 52/101 (51%), Positives = 69/101 (68%), Gaps = 3/101 (2%)

Query: 4   KKFKLSPHEIAPIV---SGVGGCLATDRIVVDGCRVGYMFREKPMNEQDSGWRFFAGDED 60
           KKF  S  EI  ++    G  GC+A+DRI+VDGCR+GYM+R++P  E DSGWRF AGDE 
Sbjct: 253 KKFVKSKEEILQLLHDWEGGDGCIASDRILVDGCRIGYMYRQEPQQEWDSGWRFMAGDET 312

Query: 61  EAYMARNEHHGVYDVNTIVNYDPTILPFVDLEIGSALERDD 101
           + Y+    H G+Y +NT+ NYDP I PF+  E+GSA  R +
Sbjct: 313 QEYLDDPYHCGIYKLNTLCNYDPEIQPFLTDEVGSAYARKE 353


>ref|YP_003309410.1| hypothetical protein Sterm_2634 [Sebaldella termitidis ATCC 33386]
 gb|ACZ09479.1| conserved hypothetical protein [Sebaldella termitidis ATCC 33386]
          Length = 331

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/104 (50%), Positives = 69/104 (66%), Gaps = 2/104 (1%)

Query: 4   KKFKLSPHEIAPIVS--GVGGCLATDRIVVDGCRVGYMFREKPMNEQDSGWRFFAGDEDE 61
           K F L   EI  I+   G  GC ATDRI VDG +VGYM+RE+   + DSGWRF AGDE +
Sbjct: 217 KDFYLRKEEIRDILQYEGAAGCFATDRITVDGEKVGYMYREEADFDGDSGWRFTAGDESD 276

Query: 62  AYMARNEHHGVYDVNTIVNYDPTILPFVDLEIGSALERDDAGDF 105
            YM   ++ G+Y +NTI NYD  I+PF+D EI +A  R++ G+F
Sbjct: 277 EYMDNPDNSGIYHLNTIANYDMEIIPFLDSEINTAYIRNENGEF 320


>ref|ZP_04578587.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gb|EEO29560.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 682

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/88 (54%), Positives = 61/88 (69%), Gaps = 1/88 (1%)

Query: 19  GVGGCLATDRIVVDGCRVGYMFREKPMNEQ-DSGWRFFAGDEDEAYMARNEHHGVYDVNT 77
           G  GCLATDRI+VDG R+GYM+RE+P  +  DSGWRF AGDE   YM   +  G+Y +NT
Sbjct: 580 GPEGCLATDRIMVDGSRIGYMYREEPDPDMPDSGWRFTAGDESSDYMMDPDKAGIYSLNT 639

Query: 78  IVNYDPTILPFVDLEIGSALERDDAGDF 105
           + NYDP I+P +D   G+A  RD+ G F
Sbjct: 640 VCNYDPDIIPLLDAPYGTAYYRDETGHF 667


>ref|NP_867102.1| hypothetical protein RB6170 [Rhodopirellula baltica SH 1]
 emb|CAD74647.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 184

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/108 (45%), Positives = 66/108 (61%)

Query: 1   MQNKKFKLSPHEIAPIVSGVGGCLATDRIVVDGCRVGYMFREKPMNEQDSGWRFFAGDED 60
           +  K F L    I P+    G C+ATD I VDG +VGYM+RE  +N+ DSGWRFF+G E 
Sbjct: 69  IMEKSFHLPADAIRPLAVNRGACIATDMITVDGLKVGYMYREDAINDVDSGWRFFSGTET 128

Query: 61  EAYMARNEHHGVYDVNTIVNYDPTILPFVDLEIGSALERDDAGDFVVP 108
           + Y+    +   YD+NTI NYDP I+ ++   IG+A ER   G  +VP
Sbjct: 129 QEYVDDATNSAFYDINTIANYDPDIIDWLGAPIGAAFERLSEGGDIVP 176