BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4356.p (536 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774147.1| methyl-accepting chemotaxis transducer trans... 481 e-133 ref|ZP_08274777.1| Methyl-accepting chemotaxis protein I (serine... 397 e-108 ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthin... 360 3e-97 ref|YP_587434.1| methyl-accepting chemotaxis sensory transducer ... 339 8e-91 ref|ZP_04764380.1| methyl-accepting chemotaxis sensory transduce... 331 2e-88 >ref|YP_003774147.1| methyl-accepting chemotaxis transducer transmembrane protein I [Herbaspirillum seropedicae SmR1] gb|ADJ62239.1| methyl-accepting chemotaxis transducer transmembrane protein I [Herbaspirillum seropedicae SmR1] Length = 547 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 329/521 (63%), Positives = 414/521 (79%) Query: 1 MKNLKIGQRLTLGLAAVIFLLVCVAGFGLRQISSLNDRIEFLTSVDEGKLKALAKTQFGI 60 MKNLKIG RL LG AAV+ LLV VA FGL+Q+S LNDRI FLTSVDEGKL+AL+K QF + Sbjct: 1 MKNLKIGHRLGLGFAAVLILLVAVAAFGLQQVSRLNDRIVFLTSVDEGKLEALSKVQFAV 60 Query: 61 TLRAIAARNLTLITDPALQKNDALLVAKTQKDINDGLAELKRLLAESAAPEAERQLIDQL 120 LRAIAARNLTL+ A QKND LV +Q+DI+ G+AEL RL+ A+ ER+++++L Sbjct: 61 GLRAIAARNLTLVQSAADQKNDLDLVGSSQQDIDAGMAELGRLMQHPASSPQEREMLEKL 120 Query: 121 ADLEKQYYPVAVKVVELAMALKNDEARVVLNKECMPILQSVITHVQKINDYLYQNSQENA 180 LE QY PVAV +V+LA + + + AR L K+CMPIL VI V++ N L +NS+ N Sbjct: 121 RQLEAQYLPVAVNIVKLATSQQTEAARASLVKDCMPILNRVIAQVEQFNKLLRKNSEANV 180 Query: 181 AAAERAYSQSKLMMVGISVLALVVGMLIAWKLTRSIAAPLASAVEIARKVRDGDLTSRIK 240 AE AY+ +K M+ S+ AL +G ++AW LTRSI+ PLA AV +A+ V+ GDL SRI+ Sbjct: 181 EEAEAAYTLAKWTMLAASLAALTLGGMVAWLLTRSISRPLAQAVSVAQSVQSGDLGSRIE 240 Query: 241 VDSRDEVGELVGALKDMNESLAAIVTDVREGTHTIGAASGEIQRGTVDLSARTEQQASSL 300 V S+DE+G+L+ ALK MN+SL IV +VR+GT TI AS EI++G +DLS RTEQQA SL Sbjct: 241 VTSKDELGQLMSALKGMNDSLVNIVGEVRQGTDTIAVASDEIKQGNMDLSNRTEQQAGSL 300 Query: 301 EETASAMEQLTATVKQNSENAVQANRLANDASNIAAEGGEAVAVVVDTMRAISGSSREIV 360 +ETASAMEQLTATVKQN++NA +ANRLA++AS +AA GG AV VVDTM +IS SS +IV Sbjct: 301 QETASAMEQLTATVKQNADNAREANRLADNASQVAARGGAAVGRVVDTMNSISASSHKIV 360 Query: 361 EIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAHRSASAAKEIEALIN 420 +IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LA RSA AAKEIEALIN Sbjct: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAVAAKEIEALIN 420 Query: 421 QSVTRIATGEQQVNHAGATMGRVVESIKNVSGIVQEISVASAEQTRGLEQINQAIAQIDE 480 +SV ++ TGE+QV+ AG+TM VVESIK+V+ I+ +IS ASAEQT GLEQIN+A+AQIDE Sbjct: 421 ESVAKVVTGEKQVSEAGSTMHEVVESIKSVTHIMHDISAASAEQTSGLEQINRAVAQIDE 480 Query: 481 ATQRNAALVEEASAASSTMKQEAASLTQLVSTFKLSSTAGA 521 ATQ+NAALVE+A+AA+++M+Q++ +LT++VS FKLS A Sbjct: 481 ATQQNAALVEQAAAAAASMQQQSVALTEVVSIFKLSRAQNA 521 >ref|ZP_08274777.1| Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) [Oxalobacteraceae bacterium IMCC9480] gb|EGF31751.1| Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) [Oxalobacteraceae bacterium IMCC9480] Length = 578 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 265/530 (50%), Positives = 371/530 (70%), Gaps = 3/530 (0%) Query: 1 MKNLKIGQRLTLGLAAVIFLLVCVAGFGLRQISSLNDRIEFLTSVDEGKLKALAKTQFGI 60 MKNLKIG RL + A ++ L + V G GL QI L++R+ F+ V ++ L + Sbjct: 1 MKNLKIGSRLGMAFAVLLLLQLIVTGVGLYQIGGLSERMSFILDVANARIDVLNDIDSAV 60 Query: 61 TLRAIAARNLTLITDPALQKNDALLVAKTQKDINDGLAELKRLLAESA-APEAERQLIDQ 119 + RAIAARNL L+ DP+ Q+ D LV ++Q I+ G + L L+ + A + RQ++++ Sbjct: 61 SQRAIAARNLALLPDPSKQQADVTLVKESQVAIDKGFSRLAELMKDPAITSDKSRQMLEK 120 Query: 120 LADLEKQYYPVAVKVVELAMALKNDEARVVLNKECMPILQSVITHVQKINDYLYQNSQEN 179 L LE Y P+A VV LA + K + A V+ ++CMP+L V H+ + L + + + Sbjct: 121 LRSLEATYLPIANNVVALATSQKTELAIKVITQDCMPVLLQVHAHIAAFDKSLKEETAVS 180 Query: 180 AAAAERAYSQSKLMMVGISVLALVVGMLIAWKLTRSIAAPLASAVEIARKVRDGDLTSRI 239 AA+ A + ++ IS +LV G L+ W++ SI PL +AV++AR+V GDLTSRI Sbjct: 181 VNAAKTASQIAVWELLIISAFSLVAGALLGWRIKLSITVPLNAAVDVARRVAAGDLTSRI 240 Query: 240 KVDSRDEVGELVGALKDMNESLAAIVTDVREGTHTIGAASGEIQRGTVDLSARTEQQASS 299 +V S+DE G+L+GALKDMN+SL IV VR+GT TI AS EI G +DLS+RTEQQASS Sbjct: 241 EVTSKDETGQLLGALKDMNDSLTGIVGKVRQGTDTIATASAEIAAGNMDLSSRTEQQASS 300 Query: 300 LEETASAMEQLTATVKQNSENAVQANRLANDASNIAAEGGEAVAVVVDTMRAISGSSREI 359 LEETAS+ME+LT T KQN++NA QAN+LA+ AS +A +GG V+ VV TM +I+ S+++I Sbjct: 301 LEETASSMEELTGTSKQNADNARQANKLASSASEVAVKGGAVVSQVVSTMGSINESAKKI 360 Query: 360 VEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAHRSASAAKEIEALI 419 +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LA RSA+AAK+I+ LI Sbjct: 361 ADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDIKGLI 420 Query: 420 NQSVTRIATGEQQVNHAGATMGRVVESIKNVSGIVQEISVASAEQTRGLEQINQAIAQID 479 N SV ++ G + V+ AGA+M +VES++ V+ I+ EI+ AS EQT G+EQ+NQAI+Q+D Sbjct: 421 NDSVEKVDAGTRLVDQAGASMSEIVESVRRVTDIISEIAAASEEQTAGIEQVNQAISQMD 480 Query: 480 EATQRNAALVEEASAASSTMKQEAASLTQLVSTFKLSS--TAGAVVAEIP 527 E TQ+NAALVE+A+AA+ +++ ++ +L VS FKL + AG + +P Sbjct: 481 EVTQQNAALVEQAAAAAESLQDQSGNLADTVSAFKLDNHGMAGTAITRLP 530 >ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89882.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 258/527 (48%), Positives = 349/527 (66%), Gaps = 4/527 (0%) Query: 1 MKNLKIGQRLTLGLAAVIFLLVCVAGFGLRQISSLNDRIEFLTSVDEGKLKALAKTQFGI 60 MKNLKIGQRL+L +++ LLV +A +I LND I + K + + Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 61 TLRAIAARNLTLITDPALQKNDALLVAKTQKDINDGLAELKRLLAESAAPEAERQLIDQL 120 A RN L+T+ A + + + K +N+ L EL++ + E RQ I L Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEK----TVRSERGRQTIAGL 116 Query: 121 ADLEKQYYPVAVKVVELAMALKNDEARVVLNKECMPILQSVITHVQKINDYLYQNSQENA 180 ++ P+ ++LA A DEA +L E P S + + K+ DY + +++ Sbjct: 117 QADRSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSG 176 Query: 181 AAAERAYSQSKLMMVGISVLALVVGMLIAWKLTRSIAAPLASAVEIARKVRDGDLTSRIK 240 A A SQ++L++ S++A+++ + A TRSI PL+ AV +ARKV DGDLT I Sbjct: 177 AEANAKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIV 236 Query: 241 VDSRDEVGELVGALKDMNESLAAIVTDVREGTHTIGAASGEIQRGTVDLSARTEQQASSL 300 V+S+DE G+L+ ALKDMNE L IVT VR GT TI +AS +I G +DLS+RTEQQASSL Sbjct: 237 VESKDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSL 296 Query: 301 EETASAMEQLTATVKQNSENAVQANRLANDASNIAAEGGEAVAVVVDTMRAISGSSREIV 360 EETAS+ME+LT+TVKQN+ENA Q+N+LA AS +A GG V+ VVDTM I+ S+++IV Sbjct: 297 EETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIV 356 Query: 361 EIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAHRSASAAKEIEALIN 420 +II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LA RSASAAKEI+ LI Sbjct: 357 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIG 416 Query: 421 QSVTRIATGEQQVNHAGATMGRVVESIKNVSGIVQEISVASAEQTRGLEQINQAIAQIDE 480 SV +++ G + V+ AGATM VVES+K V+ I+ EI+ AS EQT G+EQINQA+ Q+D+ Sbjct: 417 DSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQ 476 Query: 481 ATQRNAALVEEASAASSTMKQEAASLTQLVSTFKLSSTAGAVVAEIP 527 TQ+NAALVEEA+AA+ +++ +A+ L+Q+V FKL VV +P Sbjct: 477 VTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLDGHGTTVVNAVP 523 >ref|YP_587434.1| methyl-accepting chemotaxis sensory transducer [Cupriavidus metallidurans CH34] gb|ABF12165.1| methyl-accepting chemotaxis sensory transducer [Cupriavidus metallidurans CH34] Length = 565 Score = 339 bits (869), Expect = 8e-91, Method: Composition-based stats. Identities = 230/520 (44%), Positives = 325/520 (62%) Query: 1 MKNLKIGQRLTLGLAAVIFLLVCVAGFGLRQISSLNDRIEFLTSVDEGKLKALAKTQFGI 60 +++L I RL G A+ +++ V+G LR +S D + + + +K + + Sbjct: 26 IRDLSIKTRLLAGFGALALIVLVVSGLSLRALSQATDGFSAYINGLNARGEMASKVRTSV 85 Query: 61 TLRAIAARNLTLITDPALQKNDALLVAKTQKDINDGLAELKRLLAESAAPEAERQLIDQL 120 RAIAARNL L+T PA + V K D+ L +L ++ E R L+ ++ Sbjct: 86 DRRAIAARNLVLVTTPADISLEKEAVLKAHDDVKARLGQLNEMIKAEGVSETARNLVAEV 145 Query: 121 ADLEKQYYPVAVKVVELAMALKNDEARVVLNKECMPILQSVITHVQKINDYLYQNSQENA 180 +E +Y PVA +V LA+ K D A +N EC P+L +I + + E Sbjct: 146 DRIEARYGPVATAIVALALEGKRDAAIEKMNNECRPLLAELIKATNTYASFTKERQDEMI 205 Query: 181 AAAERAYSQSKLMMVGISVLALVVGMLIAWKLTRSIAAPLASAVEIARKVRDGDLTSRIK 240 + Y + +++ +S+ A+ M LTR+I P+ AV +A V G+L RI+ Sbjct: 206 RKLQDDYVAQRNLLIIVSLAAVAFAMTGGMLLTRAITGPIERAVGVASTVARGELGMRIE 265 Query: 241 VDSRDEVGELVGALKDMNESLAAIVTDVREGTHTIGAASGEIQRGTVDLSARTEQQASSL 300 V+S DE G L+GAL+DMNE L+ V VREG+ +I A+G+I G +DLS+RTEQQA+SL Sbjct: 266 VNSTDETGRLLGALRDMNERLSETVARVREGSSSIAVATGQIAEGNMDLSSRTEQQAASL 325 Query: 301 EETASAMEQLTATVKQNSENAVQANRLANDASNIAAEGGEAVAVVVDTMRAISGSSREIV 360 EETA+++E+L ATV+ N+ENA QA+ LA +A+ +A +G V VVDTM IS SS +I Sbjct: 326 EETAASIEELAATVRHNTENARQASELARNATEVAQQGSSTVGRVVDTMEGISASSTKIA 385 Query: 361 EIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAHRSASAAKEIEALIN 420 EI +I+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LA RS+SAAKEI+ LI+ Sbjct: 386 EITGIIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSSSAAKEIKELID 445 Query: 421 QSVTRIATGEQQVNHAGATMGRVVESIKNVSGIVQEISVASAEQTRGLEQINQAIAQIDE 480 SV ++ G + AG TM V +++ V+ IV EI+ ASAEQ RG+EQ+NQAI QID+ Sbjct: 446 ASVAQVQAGSSLASEAGKTMTDVTQAVARVTNIVDEIATASAEQNRGIEQVNQAIVQIDQ 505 Query: 481 ATQRNAALVEEASAASSTMKQEAASLTQLVSTFKLSSTAG 520 TQ+NA+LV EA+ AS +++++ SL V+ FKL S G Sbjct: 506 VTQQNASLVHEAAEASKALEEQSRSLDDAVAFFKLPSGGG 545 >ref|ZP_04764380.1| methyl-accepting chemotaxis sensory transducer [Acidovorax delafieldii 2AN] gb|EER58821.1| methyl-accepting chemotaxis sensory transducer [Acidovorax delafieldii 2AN] Length = 518 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 239/518 (46%), Positives = 342/518 (66%), Gaps = 4/518 (0%) Query: 3 NLKIGQRLTLGLAAVIFLLVCVAGFGLRQISSLNDRIEFLTSVDEGKLKALAKTQFGITL 62 NLKIG RL LG + V+ L + G G+ + L R+E + + + KL A I Sbjct: 5 NLKIGTRLALGFSVVLLFLAAILGMGVYSLGHLQSRMEEMVNSNNVKLAAANTMLDQIRD 64 Query: 63 RAIAARNLTLITDPALQKNDALLVAKTQKDINDGLAELKRLLAESAAPEAERQLIDQLAD 122 + L+ D A ++ VA + A L++L+A E + + ++ Sbjct: 65 IYAIGAMVVLVPDEAGKQAQLKQVADARAKYGAAKATLEKLVAS----EQGKAALAKVDA 120 Query: 123 LEKQYYPVAVKVVELAMALKNDEARVVLNKECMPILQSVITHVQKINDYLYQNSQENAAA 182 P++ ++ +LA+ EA L + P +++ + + + D + S + A Sbjct: 121 ALAAAVPLSNQLFDLAVKNMTAEATEHLMTKAGPAMRAALDQLNNLADLQTRLSSQANAD 180 Query: 183 AERAYSQSKLMMVGISVLALVVGMLIAWKLTRSIAAPLASAVEIARKVRDGDLTSRIKVD 242 AE Y ++ M+G+ +LA++ G+ IAW +TRSI P+ AVE+AR V DGDL+SRI V Sbjct: 181 AEAEYRSARNWMIGLGLLAILAGVAIAWHITRSITRPITHAVEVARTVADGDLSSRIDVV 240 Query: 243 SRDEVGELVGALKDMNESLAAIVTDVREGTHTIGAASGEIQRGTVDLSARTEQQASSLEE 302 S DE G+L+ AL+ MN+SLA +V +VR G ++ A+ +I G DLS+RTE+QASSLEE Sbjct: 241 STDETGQLMRALQHMNDSLAKVVGEVRSGADSMATATSQIAAGNQDLSSRTEEQASSLEE 300 Query: 303 TASAMEQLTATVKQNSENAVQANRLANDASNIAAEGGEAVAVVVDTMRAISGSSREIVEI 362 TA++ME+LT+TV+QN++NA QAN+LA AS++A +GG+ V+ VV TM AI+ SS +IV+I Sbjct: 301 TAASMEELTSTVRQNADNARQANQLALTASSVAVKGGDVVSQVVQTMDAINSSSHKIVDI 360 Query: 363 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAHRSASAAKEIEALINQS 422 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LA RSA AAKEI+ LI+ S Sbjct: 361 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAEAAKEIKVLIDDS 420 Query: 423 VTRIATGEQQVNHAGATMGRVVESIKNVSGIVQEISVASAEQTRGLEQINQAIAQIDEAT 482 V+++ G QQV AG TM +V S++ V+ I+ EI+ AS EQT G+EQ+NQAIAQ+D+ T Sbjct: 421 VSKVEQGSQQVGEAGKTMEEIVSSVRRVTDIMGEITAASQEQTSGIEQVNQAIAQMDQVT 480 Query: 483 QRNAALVEEASAASSTMKQEAASLTQLVSTFKLSSTAG 520 Q+NAALVEEA+AA+ +++ +A L+Q+VS FKL+ AG Sbjct: 481 QQNAALVEEAAAAADSLQGQAGHLSQVVSVFKLAGGAG 518