BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4355.p (320 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777117.1| chemotaxis signal transduction protein [Herb... 520 e-146 ref|YP_003775369.1| chemotaxis signal transduction protein [Herb... 383 e-104 ref|YP_003334077.1| response regulator receiver modulated CheW p... 373 e-101 ref|YP_003004925.1| response regulator receiver modulated CheW p... 369 e-100 ref|YP_003882467.1| chemotaxis protein CheV [Dickeya dadantii 39... 367 2e-99 >ref|YP_003777117.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ65209.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 267/319 (83%), Positives = 291/319 (91%) Query: 1 MDNFQKEIDERTNLTSTNKFELLLFRVGTPDGSTDRPGELYGINVFKIREIVPMMPITAA 60 MD+FQKEIDERTNLTSTNKFELLLFR+GTPDGSTD+PGELYGINVFKIREIVPMM ITAA Sbjct: 1 MDSFQKEIDERTNLTSTNKFELLLFRLGTPDGSTDKPGELYGINVFKIREIVPMMDITAA 60 Query: 61 AGMTSPMLGMVNIRGQVMSVVDLSAVTGCRASQGLNILLITEFARHTQAFAVESVEEIVR 120 AGM SPM+GMVNIRGQVMSVVDL AV GC+A G NILLITEFARHTQAFAVESVEEIVR Sbjct: 61 AGMRSPMMGMVNIRGQVMSVVDLPAVAGCKAGHGNNILLITEFARHTQAFAVESVEEIVR 120 Query: 121 LDWSQVLPADAHAPGGLVTSIARMDTERDGGRLVQVLDVEHILNLVSPMKESIEPNKGGV 180 LDWSQVLPAD+H+PG LVTSIAR+D+E DGGRLVQVLDVEHILNLVSP+KE ++P G Sbjct: 121 LDWSQVLPADSHSPGSLVTSIARLDSEVDGGRLVQVLDVEHILNLVSPVKEQMQPAPPGA 180 Query: 181 RPVTLKPGTVVLAADDSRVARALIEQCLKELNLPFIMATDGLQAWNKLQQLSAEAEAEGK 240 + LKPG VVLAADDSR+ARALIEQCLK+LNLPFIM TDGLQAW KLQQLS A EGK Sbjct: 181 AELKLKPGAVVLAADDSRMARALIEQCLKDLNLPFIMETDGLQAWKKLQQLSQAAAQEGK 240 Query: 241 SVMDKVAMVLTDLEMPEMDGFTLTRKIKSSDKYKRLPVVIHSSLTGAANEDHVRSVGADG 300 + DKVAMVLTDLEMPEMDGFTLTRKIK+SD+YK+LPVVIHSSLTG+ANEDHVRSVGA+G Sbjct: 241 PLTDKVAMVLTDLEMPEMDGFTLTRKIKASDQYKQLPVVIHSSLTGSANEDHVRSVGANG 300 Query: 301 YVAKFAPSDLAAMLAKVLP 319 YVAKF+P +LAAML +VLP Sbjct: 301 YVAKFSPPELAAMLRQVLP 319 >ref|YP_003775369.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ63461.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 205/325 (63%), Positives = 249/325 (76%), Gaps = 15/325 (4%) Query: 1 MDNFQKEIDERTNLTSTNKFELLLFRVGT-PDGSTDRPGELYGINVFKIREIVPMMPITA 59 MDNFQKEIDERTNLT++NKFELLLFR+GT P G EL+GINVFKIREIVPM P+T Sbjct: 1 MDNFQKEIDERTNLTASNKFELLLFRLGTDPHGERS---ELFGINVFKIREIVPMPPVTK 57 Query: 60 AAGMTSPMLGMVNIRGQVMSVVDLSAVTGCRASQGLNILLITEFARHTQAFAVESVEEIV 119 AAG SPMLGMVNIRGQ++SV+DL AV GC GLNILL+TE+AR TQAFAVESV+EIV Sbjct: 58 AAGTQSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIV 117 Query: 120 RLDWSQVLPADAHAPGGLVTSIARMDTERDGGRLVQVLDVEHILNLVSPMK-----ESIE 174 RL+WSQVL A+ + G VTSIAR+D ++D RL QVLDVE IL+ + P ES+E Sbjct: 118 RLEWSQVLSAETSSGGAFVTSIARLDADKDTSRLAQVLDVEQILHEIMPTDRDLKMESLE 177 Query: 175 PNKG-GVRPVTLKPGTVVLAADDSRVARALIEQCLKELNLPFIMATDGLQAWNKLQQLSA 233 + G+R PGTV +AADDS+VAR+LIEQ L+ + +P+ M G +AW K+Q+L+ Sbjct: 178 KSASHGIR-----PGTVAIAADDSKVARSLIEQGLRAMEIPYEMHVTGKEAWEKIQKLAR 232 Query: 234 EAEAEGKSVMDKVAMVLTDLEMPEMDGFTLTRKIKSSDKYKRLPVVIHSSLTGAANEDHV 293 EA AEG+ + DK++ VLTDLEMPEMDGFTLTR IK D K +PV+IHSSL+G+ANEDHV Sbjct: 233 EARAEGRPISDKISFVLTDLEMPEMDGFTLTRNIKREDYLKSIPVIIHSSLSGSANEDHV 292 Query: 294 RSVGADGYVAKFAPSDLAAMLAKVL 318 RSVG D YVAKF ++LAA + VL Sbjct: 293 RSVGGDAYVAKFEANELAATIYGVL 317 >ref|YP_003334077.1| response regulator receiver modulated CheW protein [Dickeya dadantii Ech586] gb|ACZ77372.1| response regulator receiver modulated CheW protein [Dickeya dadantii Ech586] Length = 322 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 192/318 (60%), Positives = 244/318 (76%), Gaps = 2/318 (0%) Query: 1 MDNFQKEIDERTNLTSTNKFELLLFRVGTPDGSTDRPGELYGINVFKIREIVPMMPITAA 60 MD FQKEI+ERTNLTS+NKFELLLFR+G+ G + P EL+GINVFK+REIVPM +T A Sbjct: 1 MDKFQKEIEERTNLTSSNKFELLLFRLGSATG--EGPSELFGINVFKLREIVPMPTLTKA 58 Query: 61 AGMTSPMLGMVNIRGQVMSVVDLSAVTGCRASQGLNILLITEFARHTQAFAVESVEEIVR 120 AGMT PMLGM+NIRGQ++ V+DL AV GC AS G NILL+TE+AR TQAFAVESV++IVR Sbjct: 59 AGMTPPMLGMINIRGQIIPVIDLPAVVGCAASTGRNILLVTEYARSTQAFAVESVDDIVR 118 Query: 121 LDWSQVLPADAHAPGGLVTSIARMDTERDGGRLVQVLDVEHILNLVSPMKESIEPNKGGV 180 LDWSQV A+A +TSIAR+D++ RL VLDVE IL+ + P I+ Sbjct: 119 LDWSQVNTAEAGVSNSYITSIARLDSDPASNRLALVLDVEQILHDIIPTAREIKIESVEE 178 Query: 181 RPVTLKPGTVVLAADDSRVARALIEQCLKELNLPFIMATDGLQAWNKLQQLSAEAEAEGK 240 + LKPG V + A+DS+VAR ++E LK +N+P+IM GL+AWNK++ ++ EA+AEG+ Sbjct: 179 KTFHLKPGAVAIVAEDSKVARTMLETGLKVMNIPYIMHITGLEAWNKIKSMAEEAKAEGR 238 Query: 241 SVMDKVAMVLTDLEMPEMDGFTLTRKIKSSDKYKRLPVVIHSSLTGAANEDHVRSVGADG 300 + DK+A VLTDLEMPEMDGFTLTR IK + K +PV+IHSSL+G+ANEDHVR+VGAD Sbjct: 239 PISDKIAFVLTDLEMPEMDGFTLTRNIKRDEALKHIPVIIHSSLSGSANEDHVRNVGADS 298 Query: 301 YVAKFAPSDLAAMLAKVL 318 YVAKF ++LAA + KV+ Sbjct: 299 YVAKFEINELAAAIHKVV 316 >ref|YP_003004925.1| response regulator receiver modulated CheW protein [Dickeya zeae Ech1591] gb|ACT07446.1| response regulator receiver modulated CheW protein [Dickeya zeae Ech1591] Length = 325 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 189/318 (59%), Positives = 243/318 (76%), Gaps = 2/318 (0%) Query: 1 MDNFQKEIDERTNLTSTNKFELLLFRVGTPDGSTDRPGELYGINVFKIREIVPMMPITAA 60 MD FQ+EI+ERTNLTS+NKFELLLFR+G+ G + P EL+GINVFK+REIVPM +T A Sbjct: 1 MDKFQREIEERTNLTSSNKFELLLFRLGSATG--EGPSELFGINVFKLREIVPMPTLTKA 58 Query: 61 AGMTSPMLGMVNIRGQVMSVVDLSAVTGCRASQGLNILLITEFARHTQAFAVESVEEIVR 120 AGM PMLGM+NIRGQ++ V+DL AV GC AS G NILL+TE+AR TQAFAVESV++IVR Sbjct: 59 AGMAPPMLGMINIRGQIIPVIDLPAVVGCAASTGRNILLVTEYARSTQAFAVESVDDIVR 118 Query: 121 LDWSQVLPADAHAPGGLVTSIARMDTERDGGRLVQVLDVEHILNLVSPMKESIEPNKGGV 180 LDWSQV A+A +TSIAR+D++ RL VLDVE IL+ + P + I+ Sbjct: 119 LDWSQVNTAEAGVSNTYITSIARLDSDPSSNRLALVLDVEQILHDIIPTEREIKIESVEE 178 Query: 181 RPVTLKPGTVVLAADDSRVARALIEQCLKELNLPFIMATDGLQAWNKLQQLSAEAEAEGK 240 + LKPG V + A+DS+VAR ++E LK +N+P+IM GL+AWN+++ ++ EA+AEG+ Sbjct: 179 KTFHLKPGAVAIVAEDSKVARNMLETGLKVMNIPYIMHITGLEAWNRIKLMAQEAQAEGR 238 Query: 241 SVMDKVAMVLTDLEMPEMDGFTLTRKIKSSDKYKRLPVVIHSSLTGAANEDHVRSVGADG 300 + DK+A VLTDLEMPEMDGFTLTR IK + K +PV+IHSSL+G ANEDHVR+VGAD Sbjct: 239 PISDKIAFVLTDLEMPEMDGFTLTRNIKRDEALKHIPVIIHSSLSGTANEDHVRNVGADS 298 Query: 301 YVAKFAPSDLAAMLAKVL 318 YVAKF ++LAA + KV+ Sbjct: 299 YVAKFEINELAAAIHKVV 316 >ref|YP_003882467.1| chemotaxis protein CheV [Dickeya dadantii 3937] gb|ADM97910.1| Chemotaxis protein CheV [Dickeya dadantii 3937] Length = 325 Score = 367 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 189/318 (59%), Positives = 242/318 (76%), Gaps = 2/318 (0%) Query: 1 MDNFQKEIDERTNLTSTNKFELLLFRVGTPDGSTDRPGELYGINVFKIREIVPMMPITAA 60 MD FQ+EI+ERTNLTS+NKFELLLFR+G+ G + P EL+GINVFK+REIVPM +T A Sbjct: 1 MDKFQREIEERTNLTSSNKFELLLFRLGSATG--EGPSELFGINVFKLREIVPMPTLTKA 58 Query: 61 AGMTSPMLGMVNIRGQVMSVVDLSAVTGCRASQGLNILLITEFARHTQAFAVESVEEIVR 120 AGM PMLGM+NIRGQ++ V+DL AV GC AS G NILL+TE+AR TQAFAVESV++IVR Sbjct: 59 AGMIPPMLGMINIRGQIIPVIDLPAVVGCAASTGRNILLVTEYARSTQAFAVESVDDIVR 118 Query: 121 LDWSQVLPADAHAPGGLVTSIARMDTERDGGRLVQVLDVEHILNLVSPMKESIEPNKGGV 180 LDWSQV A+A +TSIAR+D++ RL VLDVE IL+ + P + I+ Sbjct: 119 LDWSQVNTAEAGVSNTYITSIARLDSDPSSNRLALVLDVEQILHDIIPTEREIKIESVEE 178 Query: 181 RPVTLKPGTVVLAADDSRVARALIEQCLKELNLPFIMATDGLQAWNKLQQLSAEAEAEGK 240 + LKPG V + A+DS+VAR ++E LK +N+P+IM GL+AWNK++ ++ EA+AEG+ Sbjct: 179 KTFHLKPGAVAIVAEDSKVARTMLETGLKVMNIPYIMHITGLEAWNKIKAMAEEAKAEGR 238 Query: 241 SVMDKVAMVLTDLEMPEMDGFTLTRKIKSSDKYKRLPVVIHSSLTGAANEDHVRSVGADG 300 + DK+A VLTDLEMPEMDGFTLTR IK + K +PV+IHSSL+G ANEDHVR+VGAD Sbjct: 239 PISDKIAFVLTDLEMPEMDGFTLTRNIKRDEVLKSIPVIIHSSLSGTANEDHVRNVGADS 298 Query: 301 YVAKFAPSDLAAMLAKVL 318 YVAKF ++LAA + V+ Sbjct: 299 YVAKFEINELAAAIHSVV 316