BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4353.p         (113 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777723.1| hypothetical protein Hsero_4347 [Herbaspiril...   155   1e-36
ref|YP_971682.1| hypothetical protein Aave_3350 [Acidovorax citr...   150   5e-35
ref|ZP_06490166.1| hypothetical protein XcampmN_11493 [Xanthomon...   146   1e-33
ref|ZP_06487403.1| hypothetical protein XcampvN_22791 [Xanthomon...   140   6e-32
ref|ZP_03629073.1| conserved hypothetical protein [bacterium Ell...    99   2e-19

>ref|YP_003777723.1| hypothetical protein Hsero_4347 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65815.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 108

 Score =  155 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 83/107 (77%), Positives = 91/107 (85%)

Query: 6   VNTLILPPPIAAYFAAEHNPEALARCFTAQAVMKDDGHTYTGVAAITAFLAKASAQYNAT 65
           +NTL LP PIAAYFAAEH P ALA+CFTA AVMKDDGHTYTGV AIT FLAKA A+Y AT
Sbjct: 1   MNTLPLPEPIAAYFAAEHEPAALAQCFTAHAVMKDDGHTYTGVDAITTFLAKAWAKYRAT 60

Query: 66  SVPLDIQQEGDLQRVRANVAGNFPGSPIVLSYRFGLERGLIASLEIT 112
           S+P  I++E  +Q VRANV GNFPGSPIV+SYRF LERGLIASLEIT
Sbjct: 61  SLPFAIEREDSVQLVRANVTGNFPGSPIVMSYRFRLERGLIASLEIT 107


>ref|YP_971682.1| hypothetical protein Aave_3350 [Acidovorax citrulli AAC00-1]
 gb|ABM33908.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1]
          Length = 108

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 79/108 (73%), Positives = 89/108 (82%)

Query: 6   VNTLILPPPIAAYFAAEHNPEALARCFTAQAVMKDDGHTYTGVAAITAFLAKASAQYNAT 65
           +NTL LP PIAAYFAAEHNPEALA CFT QAVMKDDG T  G+ AI +F+A+ASA+Y AT
Sbjct: 1   MNTLTLPEPIAAYFAAEHNPEALAHCFTTQAVMKDDGRTCAGIDAIKSFMAEASAKYRAT 60

Query: 66  SVPLDIQQEGDLQRVRANVAGNFPGSPIVLSYRFGLERGLIASLEITA 113
           SVP  +++E   Q VRANV G+FPGSPI LSYRF LERGLIASLEITA
Sbjct: 61  SVPFALEREDGFQLVRANVTGDFPGSPIALSYRFRLERGLIASLEITA 108


>ref|ZP_06490166.1| hypothetical protein XcampmN_11493 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 108

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/102 (71%), Positives = 87/102 (85%)

Query: 11  LPPPIAAYFAAEHNPEALARCFTAQAVMKDDGHTYTGVAAITAFLAKASAQYNATSVPLD 70
           LP PIAAYFAAEHNP+ALA+CFTA AVM DDGH+YTG+ AI  F+A+ASA+YNA SVP  
Sbjct: 6   LPEPIAAYFAAEHNPDALAQCFTAHAVMTDDGHSYTGIDAIKTFMAEASAKYNALSVPFA 65

Query: 71  IQQEGDLQRVRANVAGNFPGSPIVLSYRFGLERGLIASLEIT 112
           I++E  +  VRA V+GNFPGSP+VLSYRF LERGLIASL++T
Sbjct: 66  IEREDGIHCVRAKVSGNFPGSPVVLSYRFRLERGLIASLQVT 107


>ref|ZP_06487403.1| hypothetical protein XcampvN_22791 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 105

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 73/102 (71%), Positives = 86/102 (84%), Gaps = 3/102 (2%)

Query: 11  LPPPIAAYFAAEHNPEALARCFTAQAVMKDDGHTYTGVAAITAFLAKASAQYNATSVPLD 70
           LP PIAAYFAAEHNP+ALA+CFTA AVM DDGH+YTG+ AI  F+A+ASA+YNA SVP  
Sbjct: 6   LPEPIAAYFAAEHNPDALAQCFTAHAVMTDDGHSYTGIDAIKTFMAEASAKYNALSVPFA 65

Query: 71  IQQEGDLQRVRANVAGNFPGSPIVLSYRFGLERGLIASLEIT 112
           I++E     VRA V+GNFPGSP+VLSYRF LERGLIASL++T
Sbjct: 66  IERE---DCVRAKVSGNFPGSPVVLSYRFRLERGLIASLQVT 104


>ref|ZP_03629073.1| conserved hypothetical protein [bacterium Ellin514]
 gb|EEF60642.1| conserved hypothetical protein [bacterium Ellin514]
          Length = 113

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/112 (50%), Positives = 68/112 (60%), Gaps = 2/112 (1%)

Query: 1   MEPTIVNTLILPPPIAAYFAAEH-NPEALARCFTAQAVMKDDGHTYTGVAAITAFLAKAS 59
           M+P    +L LP PIAAYF A+  N E ++ CFT  AV+KD+ HTY G AAI  +    S
Sbjct: 1   MKPA-TKSLKLPKPIAAYFDADKLNSETISHCFTENAVVKDEEHTYKGRAAIKQWKTDTS 59

Query: 60  AQYNATSVPLDIQQEGDLQRVRANVAGNFPGSPIVLSYRFGLERGLIASLEI 111
           A+Y  TS P   QQEG    V + + GNFPGSP+ L Y F  E   IASLEI
Sbjct: 60  AKYEYTSEPFACQQEGGRTFVTSRLTGNFPGSPVDLRYIFNCEGDKIASLEI 111