BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4352.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777722.1| LysR family transcription regulator protein ... 499 e-139 ref|YP_971683.1| LysR family transcriptional regulator [Acidovor... 498 e-139 ref|ZP_06487402.1| LysR family transcriptional regulator [Xantho... 466 e-129 ref|NP_103137.1| transcriptional regulator [Mesorhizobium loti M... 299 4e-79 ref|YP_004499596.1| LysR family transcriptional regulator [Serra... 285 4e-75 >ref|YP_003777722.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65814.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 270/297 (90%), Positives = 286/297 (96%) Query: 1 MRGSDFNELKAFVAVVERQSFVRAAEHLGLSPSALSQTIRQLEERIGARLLNRTTRSVAP 60 MRGS+FNELKAFVAVVERQSFVRAAEHLGLSPSALSQTIRQLE+RIGARLLNRTTRSVAP Sbjct: 1 MRGSEFNELKAFVAVVERQSFVRAAEHLGLSPSALSQTIRQLEDRIGARLLNRTTRSVAP 60 Query: 61 SASGELLYSRVAPLFREMAAAVAEASEATGKMNGTLRINTLGIAARTVIAPRLARFHQAN 120 SA+GELLY RVAPLFREMAAAVA+ASEATG+M+G LRINTLGIAART+IAPRLARFHQA+ Sbjct: 61 SANGELLYRRVAPLFREMAAAVAQASEATGQMSGRLRINTLGIAARTIIAPRLARFHQAH 120 Query: 121 PGVVLDIVVDDTLADIVAGRFDAGIRVGNRVEKDMVAIRLTPDLKMVAVASPDYLARRGI 180 P VVLDIVVDDTL DIVAGRFDAGIRVGNRVEKDMVAIRLTPDL MVAVASPDYLARRG+ Sbjct: 121 PDVVLDIVVDDTLTDIVAGRFDAGIRVGNRVEKDMVAIRLTPDLNMVAVASPDYLARRGV 180 Query: 181 PRSPADLHAHTCINWRLQTEGRQYRWEFKKRGRQVEVAVEGPVVTNHADIGIAAALDGLG 240 PRSP DLH HTCINWRLQ +GR YRWEFKKRG+Q+EVAV+GP++TNHADIGIAAAL GLG Sbjct: 181 PRSPKDLHDHTCINWRLQMDGRHYRWEFKKRGQQLEVAVDGPIITNHADIGIAAALGGLG 240 Query: 241 IAYHFERDGVDELLSQGRLVQVLADWSISRPGLFLYYPNRRHRPALLGAFIDCLLDR 297 IAYHFERDGV ELLSQGRLVQVLADWSISRPGLFLYYPNR+HRPALLGAFIDCLLDR Sbjct: 241 IAYHFERDGVSELLSQGRLVQVLADWSISRPGLFLYYPNRQHRPALLGAFIDCLLDR 297 >ref|YP_971683.1| LysR family transcriptional regulator [Acidovorax citrulli AAC00-1] gb|ABM33909.1| transcriptional regulator, LysR family [Acidovorax citrulli AAC00-1] Length = 303 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 253/297 (85%), Positives = 274/297 (92%) Query: 1 MRGSDFNELKAFVAVVERQSFVRAAEHLGLSPSALSQTIRQLEERIGARLLNRTTRSVAP 60 MRGSD+ ELKAFVAVVERQSF RAAEHLGLSPSALSQTIRQLE RIGARLLNRTTRSVAP Sbjct: 1 MRGSDYAELKAFVAVVERQSFARAAEHLGLSPSALSQTIRQLEGRIGARLLNRTTRSVAP 60 Query: 61 SASGELLYSRVAPLFREMAAAVAEASEATGKMNGTLRINTLGIAARTVIAPRLARFHQAN 120 S SGE LY R+APL REMAAAVAE EATGK+ GTLRINTLGIAARTVIAPRLARFHQA+ Sbjct: 61 STSGEQLYRRIAPLLREMAAAVAETREATGKVGGTLRINTLGIAARTVIAPRLARFHQAH 120 Query: 121 PGVVLDIVVDDTLADIVAGRFDAGIRVGNRVEKDMVAIRLTPDLKMVAVASPDYLARRGI 180 P +LDIVVDD LADIVAGRFDAG+RVG ++EKDMVA+RLTPD+ MVAVASPDY+ARRG Sbjct: 121 PDAILDIVVDDALADIVAGRFDAGVRVGGQLEKDMVAVRLTPDMPMVAVASPDYIARRGT 180 Query: 181 PRSPADLHAHTCINWRLQTEGRQYRWEFKKRGRQVEVAVEGPVVTNHADIGIAAALDGLG 240 P+SPADLH H CINWRLQ +GR YRWEF+KR +++EVAV+GPVVTNHADIGIAAAL+GLG Sbjct: 181 PKSPADLHGHACINWRLQEDGRHYRWEFRKRAQRIEVAVDGPVVTNHADIGIAAALNGLG 240 Query: 241 IAYHFERDGVDELLSQGRLVQVLADWSISRPGLFLYYPNRRHRPALLGAFIDCLLDR 297 IAYHFERDGV E L+QGRLVQVLADWSISRPGLFLYYP+RRHRPALLGAFIDCLLDR Sbjct: 241 IAYHFERDGVGEFLAQGRLVQVLADWSISRPGLFLYYPSRRHRPALLGAFIDCLLDR 297 >ref|ZP_06487402.1| LysR family transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 303 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 256/301 (85%), Positives = 277/301 (92%) Query: 1 MRGSDFNELKAFVAVVERQSFVRAAEHLGLSPSALSQTIRQLEERIGARLLNRTTRSVAP 60 MRGSDF ELKAFVAVVERQSF RAAEHLGLSPSALSQTIRQLE RIGARLLNRTTRSVAP Sbjct: 1 MRGSDFAELKAFVAVVERQSFARAAEHLGLSPSALSQTIRQLEGRIGARLLNRTTRSVAP 60 Query: 61 SASGELLYSRVAPLFREMAAAVAEASEATGKMNGTLRINTLGIAARTVIAPRLARFHQAN 120 SASGELLY+R+APLFREMAAAVAEASEATG+M TLRINTLGI ART+IAPRLARFH A+ Sbjct: 61 SASGELLYNRIAPLFREMAAAVAEASEATGQMRSTLRINTLGIVARTIIAPRLARFHHAH 120 Query: 121 PGVVLDIVVDDTLADIVAGRFDAGIRVGNRVEKDMVAIRLTPDLKMVAVASPDYLARRGI 180 P VVLDIVVDD LADIVAGRFDAGIRVG ++EKDMVA+RLTPDLKMV VASPDYLARRG Sbjct: 121 PDVVLDIVVDDALADIVAGRFDAGIRVGGQLEKDMVAVRLTPDLKMVVVASPDYLARRGT 180 Query: 181 PRSPADLHAHTCINWRLQTEGRQYRWEFKKRGRQVEVAVEGPVVTNHADIGIAAALDGLG 240 P+SP +LH H CINWRLQ +GR YRWEF+KRG+++EV V+GPVVTNHADIGIAAA++GLG Sbjct: 181 PKSPTELHDHACINWRLQMDGRHYRWEFEKRGQRIEVTVDGPVVTNHADIGIAAAVNGLG 240 Query: 241 IAYHFERDGVDELLSQGRLVQVLADWSISRPGLFLYYPNRRHRPALLGAFIDCLLDRCTN 300 IAYHFERDGV LL+QGRLVQ+L DWSISRPGLFLYYPNR+HRPALLGAFIDCLLDR Sbjct: 241 IAYHFERDGVGALLAQGRLVQLLTDWSISRPGLFLYYPNRQHRPALLGAFIDCLLDRAPF 300 Query: 301 D 301 D Sbjct: 301 D 301 >ref|NP_103137.1| transcriptional regulator [Mesorhizobium loti MAFF303099] dbj|BAB48923.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 302 Score = 299 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 160/297 (53%), Positives = 206/297 (69%), Gaps = 1/297 (0%) Query: 1 MRGSDFNELKAFVAVVERQSFVRAAEHLGLSPSALSQTIRQLEERIGARLLNRTTRSVAP 60 MRGS+F ELKAF A+VE SFVRAA L +SP ALSQ+IRQLE R+G RLLNRTTRSV+ Sbjct: 1 MRGSEFTELKAFSAIVEEGSFVRAAARLRVSPPALSQSIRQLEARVGVRLLNRTTRSVSA 60 Query: 61 SASGELLYSRVAPLFREMAAAVAEASEATGKMNGTLRINTLGIAARTVIAPRLARFHQAN 120 +A+G+ L+SR+A F E+ +A+A+ A + G+LRIN +AA IAP L F +A Sbjct: 61 TAAGDALFSRLAVAFGELESAIADVHAARDRPAGSLRINVPRVAAMRFIAPILGDFQRAY 120 Query: 121 PGVVLDIVVDDTLADIVAGRFDAGIRVGNRVEKDMVAIRLTPDLKMVAVASPDYLARRGI 180 P + L ++VDDTLADIV GRFDAGIR+G R+EKDMVA++L+ DL+M AVA+P YL R I Sbjct: 121 PDIALTVIVDDTLADIVEGRFDAGIRLGERLEKDMVAVKLSEDLQMAAVAAPAYLENRAI 180 Query: 181 PRSPADLHAHTCINWRLQTEGRQYRWEFKKRGRQVEVAVEGPVVTNHADIGIAAALDGLG 240 PR P +LH H CI + G YRWEF + R +E+A+EG + N ++ + A LDG+G Sbjct: 181 PRHPQELHQHQCIKFEWPGGGNLYRWEFARGRRALEIAIEGSLTVNDTELMLNAVLDGVG 240 Query: 241 IAYHFERDGVDELLSQGRLVQVLADWSISRPGLFLYYPNRRHRPALLGAFIDCLLDR 297 IAY FE V + QGRLV+ L WS S PG +LY+P+ RH P L AFID + R Sbjct: 241 IAYMFEYQ-VRPWIEQGRLVRFLEAWSPSFPGFYLYHPSSRHVPPALRAFIDFMRAR 296 >ref|YP_004499596.1| LysR family transcriptional regulator [Serratia sp. AS12] ref|YP_004504548.1| LysR family transcriptional regulator [Serratia sp. AS9] gb|AEF44287.1| transcriptional regulator, LysR family [Serratia sp. AS9] gb|AEF49239.1| transcriptional regulator, LysR family [Serratia sp. AS12] gb|AEG26946.1| transcriptional regulator, LysR family [Serratia sp. AS13] Length = 303 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 153/292 (52%), Positives = 201/292 (68%), Gaps = 1/292 (0%) Query: 1 MRGSDFNELKAFVAVVERQSFVRAAEHLGLSPSALSQTIRQLEERIGARLLNRTTRSVAP 60 MRGS+F EL+AF A+VE SF RAA HLG++ SALSQT+R LE R+G RLLNRTTRSVAP Sbjct: 1 MRGSEFAELRAFAAIVEHGSFARAAVHLGMTASALSQTLRNLESRLGLRLLNRTTRSVAP 60 Query: 61 SASGELLYSRVAPLFREMAAAVAEASEATGKMNGTLRINTLGIAARTVIAPRLARFHQAN 120 + +G + +R+ P E+ AAV +A + G LR+N IAA +AP +A FH+ Sbjct: 61 TDAGAQMLARLLPAIAEIDAAVEQAVNQRQQPTGRLRLNITRIAAMHFLAPLIAPFHRQY 120 Query: 121 PGVVLDIVVDDTLADIVAGRFDAGIRVGNRVEKDMVAIRLTPDLKMVAVASPDYLARRGI 180 P ++LD+ V+D L DIVAG FDAG+R+ ++EKDMVAI+L DL+M VASP YLAR G Sbjct: 121 PDILLDLNVEDRLVDIVAGGFDAGVRLHEKLEKDMVAIKLGGDLRMRVVASPAYLARHGQ 180 Query: 181 PRSPADLHAHTCINWRLQTEGRQYRWEFKKRGRQVEVAVEGPVVTNHADIGIAAALDGLG 240 P++P +L H C+N+R T G YRWEF++ G +++AVEGPV+ + +I + AALDG+G Sbjct: 181 PQAPRELRQHLCLNFRWPTNGNLYRWEFERDGETLDIAVEGPVIVDEPEILVRAALDGVG 240 Query: 241 IAYHFERDGVDELLSQGRLVQVLADWSISRPGLFLYYPNRRHRPALLGAFID 292 IAY FE V L+ GRLV +L W+ PG +LYYP R P L AFID Sbjct: 241 IAYLFEHQ-VAAALADGRLVPLLDAWTPPFPGFYLYYPANRQMPRPLRAFID 291