BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4351.p (400 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776895.1| two component sensor histidine kinase [Herba... 575 e-162 ref|YP_004354884.1| histidine kinase, Classic [Pseudomonas brass... 347 2e-93 ref|YP_002873014.1| putative two-component regulator sensor hist... 323 3e-86 ref|ZP_07775762.1| histidine kinase A [Pseudomonas fluorescens W... 320 3e-85 gb|EGH12712.1| sensor histidine kinase [Pseudomonas syringae pv.... 317 3e-84 >ref|YP_003776895.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ64987.1| two component sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 401 Score = 575 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 316/380 (83%), Positives = 345/380 (90%) Query: 18 MSERPILRLSDFIRSRMEPILEAWEGFAKTIQPPALTMDSKALRNHASLMLAAIADDLDK 77 MS RPILRLSDFIRSRMEPILEAWE FAKTI PPALTMDSKALRNHASLMLAAIADDL+K Sbjct: 1 MSGRPILRLSDFIRSRMEPILEAWEAFAKTIHPPALTMDSKALRNHASLMLAAIADDLEK 60 Query: 78 AQTEAQEIAKSEGRAPNAPNDTAAETHAIARLLSGFSVDQLASEYRALRSSVLRLWAREW 137 QTE QEIAKSEGRAP +DTAAETHAIARLLSGFSV+QLASEYRALRSSVLRLWA+EW Sbjct: 61 TQTEEQEIAKSEGRAPAHADDTAAETHAIARLLSGFSVEQLASEYRALRSSVLRLWAKEW 120 Query: 138 KEGNETNVDDITRFNEAIDQALAESLARYSKLLDQSRNLFLAILGHDLRNPLGATIQGAQ 197 KEG ETNVDDITRFNEAIDQALAESLARY+KLLDQSRNLFLAILGHDLRNPLGATI GAQ Sbjct: 121 KEGYETNVDDITRFNEAIDQALAESLARYTKLLDQSRNLFLAILGHDLRNPLGATIHGAQ 180 Query: 198 IILLAEDIDDRHRKIAARIYNSGQRMGKLVADLLDYTRTHLGTGLPLHLTSVNIGEIAQS 257 I+LLAEDIDDRHRKIAARIYNSGQRM KLVADLLDYTRTHLG+GLPL ++S N+G+IAQ Sbjct: 181 IMLLAEDIDDRHRKIAARIYNSGQRMSKLVADLLDYTRTHLGSGLPLEISSANVGDIAQR 240 Query: 258 VVEEISTSHPDREVTLKTSGDLKGKWDRERVAQAISNLLGNAVQHGLAEEPIRVEITAAQ 317 V++EISTSHPD+ +TLKTSG+L G+WD+ER+AQAISNLLGNAVQHG E I+VEI+A++ Sbjct: 241 VIDEISTSHPDKVITLKTSGELNGEWDKERIAQAISNLLGNAVQHGATGEAIKVEISASR 300 Query: 318 DEVIVSINNKAPRIPEEKLQSIFNPLVRLAADADEPAKQSGSMGLGLYIVREVASAHGGS 377 EV V+INNK P IPEEKL +IF+PLVRL A+ E + Q GSMGLGLYIVREVASAHGGS Sbjct: 301 GEVHVAINNKGPLIPEEKLHTIFDPLVRLVANGGEGSGQGGSMGLGLYIVREVASAHGGS 360 Query: 378 VTVGSSADEGTTFTIRLPKD 397 VT SS EGTTFTIRLP+D Sbjct: 361 VTASSSTAEGTTFTIRLPRD 380 >ref|YP_004354884.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69880.1| putative Histidine kinase, Classic [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 397 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 177/373 (47%), Positives = 253/373 (67%) Query: 23 ILRLSDFIRSRMEPILEAWEGFAKTIQPPALTMDSKALRNHASLMLAAIADDLDKAQTEA 82 ++RL+DFI +EPIL+AWE FAKTI P ++ MDS ALR+HA ML IA DL +QT Sbjct: 21 LMRLADFILDNIEPILQAWEDFAKTITPASIGMDSVALRDHAEQMLRTIAADLRTSQTRK 80 Query: 83 QEIAKSEGRAPNAPNDTAAETHAIARLLSGFSVDQLASEYRALRSSVLRLWAREWKEGNE 142 + IAKS G AP A +TAAETHA+ R SGF+V+Q+ SEYRALR+SVL LW + ++ Sbjct: 81 EAIAKSHGEAPTADAETAAETHAVIRQSSGFTVEQMVSEYRALRTSVLMLWMPHTQLDHK 140 Query: 143 TNVDDITRFNEAIDQALAESLARYSKLLDQSRNLFLAILGHDLRNPLGATIQGAQIILLA 202 +DD+ RFNEA+DQALAES+ YS +D SRN+FL ILGHDLR+PLGA + ++++L A Sbjct: 141 QVMDDLIRFNEAVDQALAESVVSYSGAVDASRNIFLGILGHDLRSPLGAILLSSEVLLRA 200 Query: 203 EDIDDRHRKIAARIYNSGQRMGKLVADLLDYTRTHLGTGLPLHLTSVNIGEIAQSVVEEI 262 D+ + KI +RIY S +R K+V DLLD+TRT LG+G+P+ + ++ + +VEE Sbjct: 201 GDLPAKATKITSRIYTSVKRANKIVGDLLDFTRTQLGSGIPVQRFNGDLVAACEGMVEEA 260 Query: 263 STSHPDREVTLKTSGDLKGKWDRERVAQAISNLLGNAVQHGLAEEPIRVEITAAQDEVIV 322 HP+ E+ +T+G L+ ++D R+ Q +NL+GNAVQHG P+ V ++ +D ++ Sbjct: 261 RAYHPESEIRFETTGALEARFDPARMEQVFANLIGNAVQHGAEGTPVTVSLSVEKDMAVI 320 Query: 323 SINNKAPRIPEEKLQSIFNPLVRLAADADEPAKQSGSMGLGLYIVREVASAHGGSVTVGS 382 +INN+ I +E + +IFNP+VR + + +GLGL+I + SAH G++ V S Sbjct: 321 AINNQGKPIEKEAIANIFNPMVRSLCSGEMQYGSTAGLGLGLHIASAIVSAHQGTIKVHS 380 Query: 383 SADEGTTFTIRLP 395 A GTTFT+R+P Sbjct: 381 EAQVGTTFTVRIP 393 >ref|YP_002873014.1| putative two-component regulator sensor histidine kinase protein [Pseudomonas fluorescens SBW25] emb|CAY49671.1| putative two-component regulator sensor histidine kinase protein [Pseudomonas fluorescens SBW25] Length = 374 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 164/372 (44%), Positives = 243/372 (65%) Query: 24 LRLSDFIRSRMEPILEAWEGFAKTIQPPALTMDSKALRNHASLMLAAIADDLDKAQTEAQ 83 +RL DFI + +EPIL+AWE FA+TIQ P +D LR+HA ML AI DL +QT + Sbjct: 1 MRLPDFILANLEPILQAWEDFARTIQTPGADLDRAGLRDHAEQMLHAIVLDLRTSQTVQE 60 Query: 84 EIAKSEGRAPNAPNDTAAETHAIARLLSGFSVDQLASEYRALRSSVLRLWAREWKEGNET 143 + K++G AP ++ AETHA+ RL++GFS+DQ+ SEYRALR+SVL W + K G Sbjct: 61 QTEKAQGLAPQNDTESPAETHAVTRLMAGFSIDQMVSEYRALRTSVLSQWLDQIKHGTAL 120 Query: 144 NVDDITRFNEAIDQALAESLARYSKLLDQSRNLFLAILGHDLRNPLGATIQGAQIILLAE 203 VDD+ RF+EAIDQALAES+A YS+ ++ SRN+FL ILGHDLR PLGA + GA ++ + Sbjct: 121 QVDDMNRFHEAIDQALAESIASYSRAVEASRNVFLGILGHDLRTPLGAILLGADMLRRSP 180 Query: 204 DIDDRHRKIAARIYNSGQRMGKLVADLLDYTRTHLGTGLPLHLTSVNIGEIAQSVVEEIS 263 + +R+ ++A +IY S QR ++V DLLD TR +G G+P+ T+V++ I + +V+EI Sbjct: 181 ALGERNTRVATQIYTSVQRASQIVGDLLDLTRCQMGPGIPVKRTAVDLAPICERIVDEIR 240 Query: 264 TSHPDREVTLKTSGDLKGKWDRERVAQAISNLLGNAVQHGLAEEPIRVEITAAQDEVIVS 323 HPD + + + G +D R+ Q SN++ NAVQHG A PI+V+++A+ + ++ + Sbjct: 241 AFHPDSHILFEATTQATGAFDGPRMEQVFSNIISNAVQHGDARSPIKVQLSASAETLVFA 300 Query: 324 INNKAPRIPEEKLQSIFNPLVRLAADADEPAKQSGSMGLGLYIVREVASAHGGSVTVGSS 383 ++N+ IP + L IFNP+ R + A + +GLGL+I E+ ++H G + V SS Sbjct: 301 VHNRGNPIPVDVLPFIFNPMGRFSQRAVIEHGPTEGLGLGLFIASEIVASHQGLIEVESS 360 Query: 384 ADEGTTFTIRLP 395 GT F +P Sbjct: 361 LASGTVFRATVP 372 >ref|ZP_07775762.1| histidine kinase A [Pseudomonas fluorescens WH6] gb|EFQ63491.1| histidine kinase A [Pseudomonas fluorescens WH6] Length = 376 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 165/374 (44%), Positives = 238/374 (63%) Query: 24 LRLSDFIRSRMEPILEAWEGFAKTIQPPALTMDSKALRNHASLMLAAIADDLDKAQTEAQ 83 +RLSDFI S +EPIL+ WE FA TIQ P +D + LR+HA+ ML AIA DL QT + Sbjct: 1 MRLSDFILSNLEPILQDWEDFASTIQTPGAALDQEGLRDHAAQMLHAIAQDLRTTQTVQE 60 Query: 84 EIAKSEGRAPNAPNDTAAETHAIARLLSGFSVDQLASEYRALRSSVLRLWAREWKEGNET 143 ++ K++G AP +T AETHA+ RL++GFS+DQ+ SEYRALR+SVLR W ++ K G Sbjct: 61 QLDKAQGLAPQEEEETPAETHAVTRLMAGFSIDQMVSEYRALRTSVLRQWLKQIKGGTAL 120 Query: 144 NVDDITRFNEAIDQALAESLARYSKLLDQSRNLFLAILGHDLRNPLGATIQGAQIILLAE 203 +V+D+ RF+EAIDQALAES+A YS+ ++ SRN+FL ILGHDLR PLGA + GA ++ + Sbjct: 121 DVEDMNRFHEAIDQALAESIASYSRAVEASRNVFLGILGHDLRTPLGAILLGADMLRRSS 180 Query: 204 DIDDRHRKIAARIYNSGQRMGKLVADLLDYTRTHLGTGLPLHLTSVNIGEIAQSVVEEIS 263 +R+ ++A +IY S QR ++V DLLD TR +G G+P+ T V++ I + +V EI Sbjct: 181 SGGERNTRVATQIYTSVQRASQIVGDLLDLTRCQMGPGIPVRRTQVDLAPICERIVAEIQ 240 Query: 264 TSHPDREVTLKTSGDLKGKWDRERVAQAISNLLGNAVQHGLAEEPIRVEITAAQDEVIVS 323 P ++ + G +D R+ Q SNL+ NAV HG PI+V +T QD + S Sbjct: 241 AFDPQAQLRFEPPTPAVGMFDGARMEQVFSNLISNAVHHGDRHSPIKVALTVTQDTCVFS 300 Query: 324 INNKAPRIPEEKLQSIFNPLVRLAADADEPAKQSGSMGLGLYIVREVASAHGGSVTVGSS 383 ++N IP + IFNP+ R + + + +GLGL+I E+ ++H G + V S Sbjct: 301 VHNHGNPIPTDVQPFIFNPMGRFSQRSVIEHGPTEGLGLGLFIASEIVASHQGLIEVESD 360 Query: 384 ADEGTTFTIRLPKD 397 + GT F + +P D Sbjct: 361 SQSGTVFRVTVPLD 374 >gb|EGH12712.1| sensor histidine kinase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 375 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 162/376 (43%), Positives = 248/376 (65%), Gaps = 1/376 (0%) Query: 24 LRLSDFIRSRMEPILEAWEGFAKTIQPPALTMDSKALRNHASLMLAAIADDLDKAQTEAQ 83 +RLS FI +EPI++ W FA+T+ P +D+ ALR+HA ML AIA DL Q+ + Sbjct: 1 MRLSGFILENIEPIVKEWADFARTMSTPGEPLDASALRDHAGQMLQAIASDLSTTQSSQE 60 Query: 84 EIAKSEGRAPNAPNDTAAETHAIARLLSGFSVDQLASEYRALRSSVLRLWAREWKEGNET 143 +I KS+G+ + TAA+ HA+ RL+SGF++DQ+ SE+RALR+SV++LW + + ++ Sbjct: 61 QIDKSQGQVISQEG-TAAKNHAMTRLMSGFTIDQVVSEFRALRASVIKLWMAQERGDTQS 119 Query: 144 NVDDITRFNEAIDQALAESLARYSKLLDQSRNLFLAILGHDLRNPLGATIQGAQIILLAE 203 + D+ RFNEAIDQALAES++ Y+ + SRN+FL ILGHDLR PL A + GA ++L Sbjct: 120 QMGDMIRFNEAIDQALAESISSYTGAVQASRNIFLGILGHDLRTPLSAILLGADVLLRTS 179 Query: 204 DIDDRHRKIAARIYNSGQRMGKLVADLLDYTRTHLGTGLPLHLTSVNIGEIAQSVVEEIS 263 D+ R K+A+RIY+S +R ++V DLLD+TR+ +G G+P+ T ++I I +V+E Sbjct: 180 DLGPRSTKVASRIYSSVKRASQIVGDLLDFTRSQIGPGIPMKKTEIDIQPICARIVDESR 239 Query: 264 TSHPDREVTLKTSGDLKGKWDRERVAQAISNLLGNAVQHGLAEEPIRVEITAAQDEVIVS 323 T +P+ ++ L +S + G +D +R+ Q SNL+GNAVQHG + +P+ V +TA + + + Sbjct: 240 TVNPEADIRLTSSEPVVGVFDGDRLEQVFSNLIGNAVQHGNSRDPVDVMLTACEGTLQFT 299 Query: 324 INNKAPRIPEEKLQSIFNPLVRLAADADEPAKQSGSMGLGLYIVREVASAHGGSVTVGSS 383 ++N IPE+ L IFNP+ R + + S+GLGL+IV ++ AHGG + V S Sbjct: 300 VHNTGSPIPEDVLPFIFNPMGRYSPEQMTDNGPYSSLGLGLFIVAKIVDAHGGHIEVMSK 359 Query: 384 ADEGTTFTIRLPKDQE 399 A+ GTTF + +P E Sbjct: 360 AELGTTFAVFIPLKAE 375