BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4347.p (424 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774638.1| hypothetical protein Hsero_1213 [Herbaspiril... 469 e-130 ref|YP_002873796.1| hypothetical protein PFLU4251 [Pseudomonas f... 179 9e-43 ref|YP_004791570.1| hypothetical protein BurJV3_1010 [Burkholder... 155 1e-35 ref|YP_003750553.1| hypothetical protein RPSI07_mp1635 [Ralstoni... 109 7e-22 emb|CAQ18777.1| conserved hypothetical protein [Ralstonia solana... 105 1e-20 >ref|YP_003774638.1| hypothetical protein Hsero_1213 [Herbaspirillum seropedicae SmR1] gb|ADJ62730.1| hypothetical protein Hsero_1213 [Herbaspirillum seropedicae SmR1] Length = 423 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 235/415 (56%), Positives = 303/415 (73%), Gaps = 2/415 (0%) Query: 10 ARAAVLASIAMMALPATAQMAEQTMREFTACNSSFFRVLAKDAAASQVLPALERKDELAW 69 A + ++A+ +++A PA AQMAE T+REFT CNSSFF LA D A Q + +ERKD +AW Sbjct: 11 AASVLMATFSLLAPPALAQMAENTLREFTRCNSSFFSALASDTATQQAIGPVERKDGIAW 70 Query: 70 IKVKDRKNAPDNQVNFAAPVTVGDIKLLGYFDEITDLQELGRYYYWGFIVDGTVAEVIGK 129 IKVKDRKNAP N V+F +TVG +KLLGYFDEI+D++ELG YYYWGF+V+G+V VIG Sbjct: 71 IKVKDRKNAPANHVDFNPAITVGGLKLLGYFDEISDMEELGHYYYWGFVVEGSVENVIGN 130 Query: 130 LRPMVSNADRLHPDGTDYARTEVKIGSSDWIAIKTGSSSVPQKNTIERAFIIERMENNKH 189 LRP+VS+ADRL G+DYARTE++ G+S W A+ TGS +VP NTIERAFI+E MENNK+ Sbjct: 131 LRPLVSDADRLRGSGSDYARTELRSGNSGWRAVHTGSGTVPTANTIERAFIVEPMENNKN 190 Query: 190 ATRVSCSLQGAVTAAVLKTERPDVGSDDLPPLSSQEPEESDPPANVLAAIDAAAPQASVW 249 ATRVSCSLQG+V+A VLKTERPD+G D+LP PPANV+AA+DAAAPQ SVW Sbjct: 191 ATRVSCSLQGSVSAQVLKTERPDLGPDELPAPPPPPAVLGKPPANVIAAVDAAAPQGSVW 250 Query: 250 RPRFSKISMQLSYHGKKPFTMLKEVENVNGLLHIREHYSGTFYVDRVSFAGLQQLRAEIY 309 RPRFSKI LSY G KPF + E++NV GLLH+REHY+ + YV+R+S +GL +L ++IY Sbjct: 251 RPRFSKIVTMLSYGGSKPFKTIIEIDNVEGLLHVREHYTTSSYVERISLSGLAELGSQIY 310 Query: 310 INRVAASGRPALTTDLTLTLPATLAAGETLTFESVMQSGSTPKRAPEASKQTCKIAQTIS 369 +N+ A P T+L+L+LPATL G+T S +Q + PK P +TC T+ Sbjct: 311 LNK--APMPPLAATELSLSLPATLDPGQTFHVRSSVQRTNDPKAKPVTISKTCTTGATVP 368 Query: 370 ATDINATLTGSAVLLDCTFANGRRTEFAFLQDLGVAIQTKEGNDSMTYPEFTISK 424 A I+ +L GSA L CT G E+AFLQDLG+A+ TKEG+ +TYPEF +++ Sbjct: 369 ANQIHRSLPGSATTLTCTQEGGTPREYAFLQDLGLALMTKEGDAQITYPEFALTR 423 >ref|YP_002873796.1| hypothetical protein PFLU4251 [Pseudomonas fluorescens SBW25] emb|CAY50805.1| putative exported protein [Pseudomonas fluorescens SBW25] Length = 415 Score = 179 bits (454), Expect = 9e-43, Method: Composition-based stats. Identities = 133/393 (33%), Positives = 198/393 (50%), Gaps = 27/393 (6%) Query: 33 TMREFTACNSSFFRVLAKDAAASQVLPALERKDELAWIKVKDRKNAPDNQVNFAAPVTVG 92 T++ FT C++SFF L A + L+++ + +WI V+DR + V +AP G Sbjct: 30 TLKAFTRCDASFFSSLNTHRDAWRAYAPLKQEKDFSWIAVRDRTDPKATAVPVSAPAIAG 89 Query: 93 DIKLLGYFDEITDLQELGRYYYWGFIVDGTVAEVIGKLRPMVSNADRLHPDGTDYARTEV 152 +KLL Y DE++DL LG YY+WGF VDG + +V + ++ L Y R+E+ Sbjct: 90 -LKLLSYNDEVSDLGPLGLYYFWGFTVDGNIDDVAQRFAALLDPPGALQKGEGQYTRSEL 148 Query: 153 KIGSSDWIAIKTGSSSVPQKNTIERAFIIERMENNKHATRVSCSLQGAVTAAVLKTERPD 212 K+G+S W AIK P +ER I+E N+ +RVSCS+QG VT ++ RPD Sbjct: 149 KVGNS-WQAIKPMPGKAPGLRHVERVLIVEPEGNH---SRVSCSVQGGVTPGLVALLRPD 204 Query: 213 VGSDDLPPLSSQEPEESDP-PANVLAAIDAAAPQASVWRPRFSKISMQLSYHGKK----- 266 + D P + P P VL +DA Q P+F S+ +Y K Sbjct: 205 IAPVDYPRTVADTNLADVPVPPTVLQGLDAPLLQ-----PKFK--SLNYTYLSKNDAGKE 257 Query: 267 -PFTMLKEVENVNGLLHIREHYSGTFYVDRVSFAGLQQLRAEIYINRVAASGRPALTTDL 325 P T+ + E GLL E Y F VDR+ A L QL+++ +N V G+ T + Sbjct: 258 APITIRFKAE--GGLLVKNEAYGNAFNVDRLMVADLIQLKSK--MNGV-GEGQVLQTREA 312 Query: 326 TLTLPATLAAGETLTFESVMQSGST-PKRAPEASKQTCKIAQTISATDINATLTGSAVLL 384 + LP A G+TL+ M + P P + TCK+ + A ++ A+LTG A+ L Sbjct: 313 EVKLPTRWAPGQTLSAHLKMANVPVKPTDKPTETTLTCKVGERFPAREVFASLTGDAIRL 372 Query: 385 DCTFANGRRTEFAFLQDLGVAIQTKEGNDSMTY 417 C +G + AF++DLGVA+ T E S T+ Sbjct: 373 ACE-QDGYTSSRAFIEDLGVAL-TLEATSSQTH 403 >ref|YP_004791570.1| hypothetical protein BurJV3_1010 [Burkholderia sp. JV3] gb|AEM50344.1| hypothetical protein BurJV3_1010 [Burkholderia sp. JV3] Length = 415 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 120/381 (31%), Positives = 184/381 (48%), Gaps = 23/381 (6%) Query: 31 EQTMREFTACNSSFFRVLAKDAAASQVLPALERKDELAWIKVKDRKNAPDNQVNFAAPVT 90 ++T F+ C++SFF L A A +L + WI+ KDR N+V Sbjct: 31 DETFTAFSRCDASFFSSLHTHADAWATHASLGGTGTINWIETKDRSET-TNEVQLRDGPR 89 Query: 91 VGDIKLLGYFDEITDLQELGRYYYWGFIVDGTVAEVIGKLRPMVSNADRLHPDGTDYART 150 +G + + YFD +DL LGRY WGF D + V+ +L P++ +A+RL D +AR+ Sbjct: 90 IGGLPVATYFDNTSDLGVLGRYVGWGFTFDAPLDTVVKQLSPLIEHAERLQGDRGMHARS 149 Query: 151 EVKIGSSDWIAIKTGSSSVPQKNTIERAFIIERMENNKHATRVSCSLQGAVTAAVLKTER 210 EV+ G W+ + +ER + ME++ T V CSLQGAV A V+ R Sbjct: 150 EVRAGDQ-WLPTSNRGGIASGRMLLERVLM---MESSGGRTMVGCSLQGAVDADVMAQLR 205 Query: 211 PDVGSDDLPPLSSQEPEESDPPANVLAAIDAAAPQASVWRPRFSKISMQLSYHGKKPFTM 270 PDV + D P + D P VL A+ + PRF+ ++ + G+ T Sbjct: 206 PDVPAADRPQPQAAGRRLEDVP--VLKAV-VEGVDNPLLAPRFTSLTYRYQIKGRASSTT 262 Query: 271 LKEVENV--NGLLHIREHYSGTFYVDRVSFAGLQQLRAEIYINRVAASGRPALTTDLTLT 328 + V NGLL I E Y+ +F + R+S A L QL + + + T L Sbjct: 263 PTTITMVADNGLLKITEDYT-SFTMHRLSKANLFQLAS------IHDAAMTLQTRSLKQD 315 Query: 329 LPATLAAGETLTFESVMQSGSTPKRA---PEASKQTCKIAQTISATDINATLTGSAVLLD 385 LPA G E+ M P+R+ P + +C I + A D++A+L+G A+ L+ Sbjct: 316 LPAAWTPGSRFRAETTMV--YYPERSTSKPLTTALSCVIGERFPARDVSASLSGDAIRLE 373 Query: 386 CTFANGRRTEFAFLQDLGVAI 406 C +G R+ AF++DLG+AI Sbjct: 374 CK-VDGDRSVRAFIEDLGIAI 393 >ref|YP_003750553.1| hypothetical protein RPSI07_mp1635 [Ralstonia solanacearum PSI07] emb|CBJ35954.1| conserved exported protein of unknown function [Ralstonia solanacearum PSI07] Length = 213 Score = 109 bits (273), Expect = 7e-22, Method: Composition-based stats. Identities = 68/203 (33%), Positives = 106/203 (52%), Gaps = 3/203 (1%) Query: 14 VLASIAMMALPA-TAQMAEQTMREFTACNSSFFRVL-AKDAAASQVLPALERKDELAWIK 71 +LA+ +MA P A+ A + ++C FF + AK A S + +R +A+I Sbjct: 11 LLATATVMARPGHAAEPAGTLVGALSSCQKEFFAAIGAKREALSALATVKQRAGGVAFIA 70 Query: 72 VKDRKNAPDNQVNFAAPVTVGDIKLLGYFDEITDLQELGRYYYWGFIVDGTVAEVIGKLR 131 V DR + V F+AP + ++ YFDE+ D+ LG+YY WGFIV G + EV G++ Sbjct: 71 VPDRDKEDASAVRFSAPYQDAGVPVIAYFDEVRDIGALGKYYAWGFIVPGKLDEVAGQVA 130 Query: 132 PMVSNADRLHPDGTDYARTEVKIGSSDWIAIKTGSSSVPQKNTIERAFIIERM-ENNKHA 190 P ++ + RL Y R+++ + + P T+ER +IE A Sbjct: 131 PRIAESKRLRSTEGVYVRSDLWKDGHWQTDDQLAGDTPPAPGTVERVLLIEEAGPAFPGA 190 Query: 191 TRVSCSLQGAVTAAVLKTERPDV 213 R+ CSLQG+VTA +L +ERPD+ Sbjct: 191 VRIGCSLQGSVTAEMLASERPDL 213 >emb|CAQ18777.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] Length = 212 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 104/203 (51%), Gaps = 3/203 (1%) Query: 14 VLASIAMMALPA-TAQMAEQTMREFTACNSSFFRVL-AKDAAASQVLPALERKDELAWIK 71 +LA+ ++ P A+ A + ++C F + A+ A S + +R +A+I Sbjct: 10 LLATAMVVVKPGHAAEPAGSLIGALSSCRKDVFAAIGARQEALSALATVKQRAGGVAFIA 69 Query: 72 VKDRKNAPDNQVNFAAPVTVGDIKLLGYFDEITDLQELGRYYYWGFIVDGTVAEVIGKLR 131 V DR + V F+AP + L+ YFDE+ D+ LG+YY WGFIV G + +V ++ Sbjct: 70 VPDRDKEDASAVRFSAPYQDAGVPLIAYFDEVRDIGALGKYYAWGFIVPGKLDDVARQVA 129 Query: 132 PMVSNADRLHPDGTDYARTEVKIGSSDWIAIKTGSSSVPQKNTIERAFIIERMENN-KHA 190 P ++ + RL Y R+E G + + P T+ER +IE E A Sbjct: 130 PRIAESKRLRATEGVYVRSEQWKGGHWQADDQLTGDTPPAPGTVERVLLIEDAEPGFPGA 189 Query: 191 TRVSCSLQGAVTAAVLKTERPDV 213 R+ CSLQG+VTA +L TERPD+ Sbjct: 190 VRIGCSLQGSVTAEMLATERPDL 212