BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4344.p         (98 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001611783.1| hypothetical protein sce1146 [Sorangium cell...    80   9e-14
ref|ZP_04679662.1| Hypothetical protein OINT_1000518 [Ochrobactr...    62   3e-08

>ref|YP_001611783.1| hypothetical protein sce1146 [Sorangium cellulosum 'So ce 56']
 emb|CAN91303.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
          cellulosum 'So ce 56']
          Length = 91

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 5/94 (5%)

Query: 1  MKKIILGCAAVETDDDFWSLYCKAVQPDGSNIFGRNLEALWDAVSAGGPGWPGPCQIELM 60
          M+ I++ C  V+T+ DFWS Y  A +P+G+  FGRNL+A WD ++ GGPGWPG C+++L+
Sbjct: 1  MRTIVVDCDTVQTEADFWSAYVTAAEPEGAAYFGRNLDAFWDGLN-GGPGWPGECELKLV 59

Query: 61 NVDEFAK-RNPRLYAGLQRIAKDLPESSCVQIVL 93
          N       R+ +    L+ IA     S+ V++ L
Sbjct: 60 NTQSLHPLRDGQFVQALRDIAS---RSTFVKVTL 90


>ref|ZP_04679662.1| Hypothetical protein OINT_1000518 [Ochrobactrum intermedium LMG
          3301]
 gb|EEQ95168.1| Hypothetical protein OINT_1000518 [Ochrobactrum intermedium LMG
          3301]
          Length = 96

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 36/67 (53%)

Query: 5  ILGCAAVETDDDFWSLYCKAVQPDGSNIFGRNLEALWDAVSAGGPGWPGPCQIELMNVDE 64
          I+ C  +E+ D+ W  Y  AV  +    FG  L++  DAV   GPGWPG C++   NVD 
Sbjct: 6  IIDCTGIESADELWRRYLSAVPAENPEAFGYTLDSFCDAVQWQGPGWPGECELVFQNVDA 65

Query: 65 FAKRNPR 71
           AK   R
Sbjct: 66 LAKLKTR 72