BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4342.p         (194 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776854.1| plasmid stabilization system protein [Herbas...   124   8e-27
ref|YP_004753396.1| hypothetical protein CFU_2746 [Collimonas fu...   112   2e-23
ref|ZP_08198946.1| hypothetical protein NBCG_04123 [Nocardioidac...   107   1e-21
ref|YP_003114880.1| hypothetical protein Caci_4175 [Catenulispor...   105   3e-21
ref|YP_922592.1| hypothetical protein Noca_1391 [Nocardioides sp...   100   2e-19

>ref|YP_003776854.1| plasmid stabilization system protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64946.1| plasmid stabilization system protein [Herbaspirillum seropedicae
           SmR1]
          Length = 108

 Score =  124 bits (310), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 88/106 (83%), Positives = 96/106 (90%)

Query: 87  MPQTAWSKKRERQYEHIKSGAVKRGTGTRRAEEIAARTVNKERAQHGESKSASKTSTEDM 146
           MPQ AWS KRERQYEHIKSGA+K G GT+RAEEIAARTVNKERA+HGESK+ASKTSTEDM
Sbjct: 1   MPQAAWSNKRERQYEHIKSGALKHGAGTKRAEEIAARTVNKERARHGESKTASKTSTEDM 60

Query: 147 SPSRRGGLRSHTGAGGRTYKQLYAEAAARHIKGRSGMRKAELEKEL 192
           S +RRGGLRSH+G GGRTY+QLYAEAA+R IKGRS M KAELEK L
Sbjct: 61  SSARRGGLRSHSGPGGRTYQQLYAEAASRKIKGRSSMNKAELEKAL 106


>ref|YP_004753396.1| hypothetical protein CFU_2746 [Collimonas fungivorans Ter331]
 gb|AEK62573.1| hypothetical protein CFU_2746 [Collimonas fungivorans Ter331]
          Length = 132

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 74/124 (59%), Positives = 87/124 (70%)

Query: 70  ASPCRMSPAGATAEEAIMPQTAWSKKRERQYEHIKSGAVKRGTGTRRAEEIAARTVNKER 129
           +SP R +      +  +MP  AWSKKRERQY HIK   VK G   + AEEIAARTVNKER
Sbjct: 3   SSPPRENIQFVFLKGIVMPANAWSKKRERQYAHIKESLVKHGKRNQLAEEIAARTVNKER 62

Query: 130 AQHGESKSASKTSTEDMSPSRRGGLRSHTGAGGRTYKQLYAEAAARHIKGRSGMRKAELE 189
           AQHGE++ AS +S +D+S  RRGGLRSH GAGGRT+ QLY EA  R +KGRS M KA+LE
Sbjct: 63  AQHGEAEQASGSSVKDISAGRRGGLRSHRGAGGRTFAQLYNEAKQRGVKGRSKMNKAQLE 122

Query: 190 KELA 193
             L 
Sbjct: 123 HALG 126


>ref|ZP_08198946.1| hypothetical protein NBCG_04123 [Nocardioidaceae bacterium Broad-1]
 gb|EGD41588.1| hypothetical protein NBCG_04123 [Nocardioidaceae bacterium Broad-1]
          Length = 108

 Score =  107 bits (266), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 74/108 (68%), Positives = 83/108 (76%)

Query: 87  MPQTAWSKKRERQYEHIKSGAVKRGTGTRRAEEIAARTVNKERAQHGESKSASKTSTEDM 146
           MPQ AWSKKRERQYEHIK G + RG     AEEIAARTVNKERA+ GES+  S+TSTED+
Sbjct: 1   MPQRAWSKKRERQYEHIKKGLLDRGENEDTAEEIAARTVNKERAREGESRERSRTSTEDI 60

Query: 147 SPSRRGGLRSHTGAGGRTYKQLYAEAAARHIKGRSGMRKAELEKELAK 194
           S  RRGGLRSH G GGRT  QLY EA  ++IKGRS M KAELEK + +
Sbjct: 61  SSGRRGGLRSHRGPGGRTKAQLYEEAKDKNIKGRSKMNKAELEKAVGR 108


>ref|YP_003114880.1| hypothetical protein Caci_4175 [Catenulispora acidiphila DSM 44928]
 gb|ACU73039.1| conserved hypothetical protein [Catenulispora acidiphila DSM 44928]
          Length = 109

 Score =  105 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 71/107 (66%), Positives = 82/107 (76%)

Query: 87  MPQTAWSKKRERQYEHIKSGAVKRGTGTRRAEEIAARTVNKERAQHGESKSASKTSTEDM 146
           MP+  WS KRERQYEH+K     RG    +AEEIAARTVNKERA+HGE+K++SK S ED+
Sbjct: 1   MPRGQWSAKRERQYEHVKESVEDRGVPESKAEEIAARTVNKERARHGEAKTSSKLSKEDI 60

Query: 147 SPSRRGGLRSHTGAGGRTYKQLYAEAAARHIKGRSGMRKAELEKELA 193
           S  RRGGLRSH G+GGRTY QLY EA +R +KGRS M KAELEK L 
Sbjct: 61  SSGRRGGLRSHKGSGGRTYDQLYQEARSRGVKGRSKMNKAELEKALG 107


>ref|YP_922592.1| hypothetical protein Noca_1391 [Nocardioides sp. JS614]
 gb|ABL80905.1| conserved hypothetical protein [Nocardioides sp. JS614]
          Length = 108

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 69/108 (63%), Positives = 85/108 (78%)

Query: 87  MPQTAWSKKRERQYEHIKSGAVKRGTGTRRAEEIAARTVNKERAQHGESKSASKTSTEDM 146
           MPQ  WS+KRERQY+HIK G  +RG     AEEIAARTVNKERA+ GE++  S+TSTED+
Sbjct: 1   MPQQQWSEKRERQYDHIKEGLEERGRPEDEAEEIAARTVNKERARSGEARQRSRTSTEDI 60

Query: 147 SPSRRGGLRSHTGAGGRTYKQLYAEAAARHIKGRSGMRKAELEKELAK 194
           S SRRGGLRSH+G+GGRT  QLY EA  +++KGRS M KAELE+ + +
Sbjct: 61  SSSRRGGLRSHSGSGGRTRDQLYEEARRKNVKGRSSMNKAELERAVGR 108