BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4341.p (380 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776853.1| branched-chain amino acid ABC transporter pe... 626 e-177 ref|YP_001099059.1| putative amino acid ABC transporter [Hermini... 507 e-141 ref|YP_001352355.1| ABC-type branched-chain amino acid transport... 495 e-138 ref|YP_004751555.1| putative amino acid ABC transporter [Collimo... 493 e-137 ref|ZP_08273712.1| putative amino acid ABC transporter [Oxalobac... 490 e-136 >ref|YP_003776853.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64945.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 380 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 365/380 (96%), Positives = 376/380 (98%) Query: 1 MKFKSAIIPLTAAIGLAFAGAAHAQEVVKIAHVGPLSGPNAHMGKDNENGARMAVEELNA 60 MK KSAIIPLTAAIGLAFAGAA++QEVVKIAHVGPLSGPNAHMGKDNENGARMAV+ELNA Sbjct: 1 MKLKSAIIPLTAAIGLAFAGAAYSQEVVKIAHVGPLSGPNAHMGKDNENGARMAVDELNA 60 Query: 61 KGFTIGGKKVKFELLGEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYSDA 120 KGFTIGGKKVKFEL+GEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYSDA Sbjct: 61 KGFTIGGKKVKFELVGEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYSDA 120 Query: 121 GIPQVSPSATNPKYTQQGFKTTFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYGQ 180 GIPQVSPSATNPKYTQQGFKT FRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYGQ Sbjct: 121 GIPQVSPSATNPKYTQQGFKTAFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYGQ 180 Query: 181 GVAEEFAKGAKAAGGTIVGTQFTNDKATDFNAILTSLKGKKPDVIFFGGMDAVGGPMLRQ 240 GVA+EFAKGAKAAGGTIVGTQ+TNDKATDFNAILTSLKGKKPDV+FFGGMDAVGGPMLRQ Sbjct: 181 GVADEFAKGAKAAGGTIVGTQYTNDKATDFNAILTSLKGKKPDVVFFGGMDAVGGPMLRQ 240 Query: 241 MKQLGIGAKFMGGDGICTGSLPGLAGDGLGEDQVICAEAGGVDASGKKGMDDFRAAYKKK 300 MKQLGI AKFMGGDGICTGSLPGLAGDGLG+DQVICAEAGGVD +GKKGMDDFRAAYKKK Sbjct: 241 MKQLGISAKFMGGDGICTGSLPGLAGDGLGDDQVICAEAGGVDEAGKKGMDDFRAAYKKK 300 Query: 301 FGIDVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAKGDVKD 360 FGIDVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAKGD+KD Sbjct: 301 FGIDVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAKGDIKD 360 Query: 361 GSLTLYTYKGGQRTVLAVTK 380 GSLTLYTYKGGQRT+LAVTK Sbjct: 361 GSLTLYTYKGGQRTLLAVTK 380 >ref|YP_001099059.1| putative amino acid ABC transporter [Herminiimonas arsenicoxydans] emb|CAL60932.1| putative ABC-type branched-chain amino acid transport system, periplasmic component [Herminiimonas arsenicoxydans] Length = 381 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 289/381 (75%), Positives = 334/381 (87%), Gaps = 1/381 (0%) Query: 1 MKFKSAIIPLTAAIGLAFAGAAHAQE-VVKIAHVGPLSGPNAHMGKDNENGARMAVEELN 59 M+FKS +IPL A+ A AG A AQE V+KI V P++G +AHMGKDNENGARMAVE+LN Sbjct: 1 MQFKSKMIPLAGALAFALAGGAAAQEQVIKIGSVAPITGTDAHMGKDNENGARMAVEDLN 60 Query: 60 AKGFTIGGKKVKFELLGEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYSD 119 AKG TIGGKKVKF+LL EDDASDPKQATA A KLVD V AVIGHLNSGTTIPAS+IY++ Sbjct: 61 AKGTTIGGKKVKFQLLAEDDASDPKQATAAAQKLVDAGVVAVIGHLNSGTTIPASRIYAN 120 Query: 120 AGIPQVSPSATNPKYTQQGFKTTFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYG 179 AGIPQVSPSATNPKYTQQGFKT FRVVANDAQLG LG+YAV+ LG K +AVIDDRTAYG Sbjct: 121 AGIPQVSPSATNPKYTQQGFKTAFRVVANDAQLGQVLGQYAVKTLGGKSVAVIDDRTAYG 180 Query: 180 QGVAEEFAKGAKAAGGTIVGTQFTNDKATDFNAILTSLKGKKPDVIFFGGMDAVGGPMLR 239 QGVA+EFAKG KAAGG+IV +Q+TN+KATDFN+ILTS+K KKPD+IFFGGMDAVGGPMLR Sbjct: 181 QGVADEFAKGVKAAGGSIVASQYTNNKATDFNSILTSIKAKKPDIIFFGGMDAVGGPMLR 240 Query: 240 QMKQLGIGAKFMGGDGICTGSLPGLAGDGLGEDQVICAEAGGVDASGKKGMDDFRAAYKK 299 QMKQLGI AKFMGGDGICTGSLPGLAG LG++QV+CAEAGGV + +KG++DFRA+YKK Sbjct: 241 QMKQLGINAKFMGGDGICTGSLPGLAGTALGDNQVVCAEAGGVPEARRKGVEDFRASYKK 300 Query: 300 KFGIDVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAKGDVK 359 +FG++VVY AAYAYDAT V +AM KA S +P KYLPELAK ++ G+TG IAFDAKGD+K Sbjct: 301 RFGVEVVYTAAYAYDATNAVVEAMKKANSWEPAKYLPELAKSNYPGITGTIAFDAKGDIK 360 Query: 360 DGSLTLYTYKGGQRTVLAVTK 380 DG+LTLYT++GG+R +LAVTK Sbjct: 361 DGTLTLYTFRGGKREMLAVTK 381 >ref|YP_001352355.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] gb|ABR89836.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Janthinobacterium sp. Marseille] Length = 381 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 287/381 (75%), Positives = 328/381 (86%), Gaps = 1/381 (0%) Query: 1 MKFKSAIIPLTAAIGLAFAGAAHAQE-VVKIAHVGPLSGPNAHMGKDNENGARMAVEELN 59 M+FK+ +IPLT A+ LA AG+ AQE +VKI HVGP++G +AHMGKDNENGAR+AVEELN Sbjct: 1 MQFKTKMIPLTGAVLLALAGSTLAQEQIVKIGHVGPVTGTDAHMGKDNENGARLAVEELN 60 Query: 60 AKGFTIGGKKVKFELLGEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYSD 119 AKG I GKKVK + + EDDA+DPKQATA ATKLVD VA VIGHLNSG TIPAS+IY++ Sbjct: 61 AKGVVINGKKVKLQYMPEDDAADPKQATAAATKLVDSNVAVVIGHLNSGATIPASRIYAN 120 Query: 120 AGIPQVSPSATNPKYTQQGFKTTFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYG 179 AGI Q+SPS+T+PKYTQQGFKT FRVVANDAQLG LG+YAV+ L K +AVIDDRTAYG Sbjct: 121 AGIVQISPSSTSPKYTQQGFKTAFRVVANDAQLGRVLGQYAVKSLAAKNVAVIDDRTAYG 180 Query: 180 QGVAEEFAKGAKAAGGTIVGTQFTNDKATDFNAILTSLKGKKPDVIFFGGMDAVGGPMLR 239 QGVAEEFAKG KAAGGT+V +Q+TN+KATDFNAILT++K KKPDVIFFGGMDAVGGPML+ Sbjct: 181 QGVAEEFAKGVKAAGGTVVASQYTNNKATDFNAILTAIKAKKPDVIFFGGMDAVGGPMLQ 240 Query: 240 QMKQLGIGAKFMGGDGICTGSLPGLAGDGLGEDQVICAEAGGVDASGKKGMDDFRAAYKK 299 QMKQLGI AKFMGGDGICTGSLPGLAG GLGE+ V CAEAGGV+ + K G+D FRAAYKK Sbjct: 241 QMKQLGINAKFMGGDGICTGSLPGLAGAGLGENNVYCAEAGGVEDARKAGLDKFRAAYKK 300 Query: 300 KFGIDVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAKGDVK 359 +FGIDV+Y AAYAYDAT V DAM KA S + KYLPEL KIS+ GVTG IAFDAKGD+K Sbjct: 301 RFGIDVIYTAAYAYDATYAVVDAMQKAKSWESAKYLPELTKISYPGVTGTIAFDAKGDIK 360 Query: 360 DGSLTLYTYKGGQRTVLAVTK 380 DG+LTLYTY+GG+RT LAV K Sbjct: 361 DGTLTLYTYRGGKRTELAVVK 381 >ref|YP_004751555.1| putative amino acid ABC transporter [Collimonas fungivorans Ter331] gb|AEK60732.1| putative amino acid ABC transporter [Collimonas fungivorans Ter331] Length = 380 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 281/377 (74%), Positives = 319/377 (84%), Gaps = 1/377 (0%) Query: 5 SAIIPLTAAIGLAFAGAAHAQE-VVKIAHVGPLSGPNAHMGKDNENGARMAVEELNAKGF 63 + +IPL AAI L+ + +AHAQE VVKIAHVGP++GP AH+GKDNENGARMA+EELN +G Sbjct: 4 TKMIPLAAAIALSLSASAHAQEQVVKIAHVGPITGPIAHIGKDNENGARMAIEELNKQGL 63 Query: 64 TIGGKKVKFELLGEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYSDAGIP 123 T+ GKK +F L+ EDDASDPKQATAVA KLVD KVA VIGH+NSGT+IPASKIY DAGIP Sbjct: 64 TLDGKKTRFVLMAEDDASDPKQATAVAQKLVDAKVAGVIGHVNSGTSIPASKIYYDAGIP 123 Query: 124 QVSPSATNPKYTQQGFKTTFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYGQGVA 183 Q+SPS T+ KYTQQGF TTFRVVAND+QLG ALG+YA + L K AVIDDRTAYGQG+A Sbjct: 124 QISPSTTSAKYTQQGFNTTFRVVANDSQLGGALGRYAAKTLHAKTAAVIDDRTAYGQGLA 183 Query: 184 EEFAKGAKAAGGTIVGTQFTNDKATDFNAILTSLKGKKPDVIFFGGMDAVGGPMLRQMKQ 243 EEF K AKAAG TIV TQ+TNDKATDFNAILTS K KKPDV+FFGG+DA GPMLRQMKQ Sbjct: 184 EEFTKAAKAAGMTIVATQYTNDKATDFNAILTSFKAKKPDVVFFGGLDAGAGPMLRQMKQ 243 Query: 244 LGIGAKFMGGDGICTGSLPGLAGDGLGEDQVICAEAGGVDASGKKGMDDFRAAYKKKFGI 303 LGI AKFMGGD ICT LP LAGDG+ DQVICAEAGGV+ S +KG+D ++ AYK K+G Sbjct: 244 LGIQAKFMGGDAICTSDLPKLAGDGISNDQVICAEAGGVEESARKGLDAYKTAYKIKYGK 303 Query: 304 DVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAKGDVKDGSL 363 DVV A Y YDA MT+ADAM KA SADPKKYLPELAKI HKGVTG+IAFDAKGD+KDG++ Sbjct: 304 DVVIYAPYTYDALMTMADAMQKAKSADPKKYLPELAKIQHKGVTGMIAFDAKGDIKDGTI 363 Query: 364 TLYTYKGGQRTVLAVTK 380 TLYTY+G QR+ LAVTK Sbjct: 364 TLYTYRGAQRSQLAVTK 380 >ref|ZP_08273712.1| putative amino acid ABC transporter [Oxalobacteraceae bacterium IMCC9480] gb|EGF32816.1| putative amino acid ABC transporter [Oxalobacteraceae bacterium IMCC9480] Length = 383 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 285/383 (74%), Positives = 321/383 (83%), Gaps = 3/383 (0%) Query: 1 MKFKSAIIPLTAAIGLAFAGAAHAQE-VVKIAHVGPLSGPNAHMGKDNENGARMAVEELN 59 M+F + +IPL AA+ AFAG A AQE V+KI HVGP+SG AH+GKDNENGA+MA++ELN Sbjct: 1 MQFNTKMIPLAAALAFAFAGTASAQEQVIKIGHVGPISGAIAHLGKDNENGAKMAIDELN 60 Query: 60 AKGFTIGGKKVKFELLGEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYSD 119 AKG IGGKKVKFELL EDDA+DPKQ TAVA KLVD KV VIGHLNSGTTIPASKIY + Sbjct: 61 AKGVVIGGKKVKFELLAEDDAADPKQGTAVAQKLVDAKVNGVIGHLNSGTTIPASKIYYE 120 Query: 120 AGIPQVSPSATNPKYTQQGFKTTFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYG 179 AGIPQ+SPSATNPKYTQQGFKT FRVVAND QLG LG+YAVQ L K++AVIDDRTAYG Sbjct: 121 AGIPQISPSATNPKYTQQGFKTAFRVVANDGQLGGTLGRYAVQVLKAKRVAVIDDRTAYG 180 Query: 180 QGVAEEFAKGAK--AAGGTIVGTQFTNDKATDFNAILTSLKGKKPDVIFFGGMDAVGGPM 237 QGVAEEF KGAK + G IV TQ+TNDKATDFNAILTS+K K PDV+FFGGMDAV GPM Sbjct: 181 QGVAEEFIKGAKGKSTGVEIVATQYTNDKATDFNAILTSIKSKNPDVVFFGGMDAVAGPM 240 Query: 238 LRQMKQLGIGAKFMGGDGICTGSLPGLAGDGLGEDQVICAEAGGVDASGKKGMDDFRAAY 297 LRQMKQLGI AKFMGGDGICT +L LAGD + ++QV+CAEAGGV+ + KKGM+DF+AAY Sbjct: 241 LRQMKQLGINAKFMGGDGICTEALATLAGDAMADNQVVCAEAGGVEDAQKKGMEDFKAAY 300 Query: 298 KKKFGIDVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAKGD 357 KKKFG+DV A Y YD+ MT+ DAM KAGSADP KY P LAKI HKGVTG IAFD KGD Sbjct: 301 KKKFGVDVQIYAPYVYDSVMTMVDAMVKAGSADPAKYAPVLAKIQHKGVTGNIAFDDKGD 360 Query: 358 VKDGSLTLYTYKGGQRTVLAVTK 380 +KDG+LTLY+YKGG+R LAV K Sbjct: 361 IKDGTLTLYSYKGGKRLQLAVVK 383