BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4332.p (489 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776279.1| outer membrane channel lipoprotein [Herbaspi... 365 9e-99 ref|YP_902031.1| outer membrane efflux protein [Pelobacter propi... 332 6e-89 ref|NP_521851.1| putative outer membrane CHANEL lipoprotein [Ral... 327 4e-87 ref|ZP_00942881.1| Type I secretion outer membrane protein [Rals... 326 5e-87 emb|CCA87572.1| putative Outer membrane efflux protein precursor... 326 7e-87 >ref|YP_003776279.1| outer membrane channel lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ64371.1| outer membrane channel lipoprotein [Herbaspirillum seropedicae SmR1] Length = 484 Score = 365 bits (937), Expect = 9e-99, Method: Composition-based stats. Identities = 226/445 (50%), Positives = 308/445 (69%), Gaps = 5/445 (1%) Query: 37 DPLLARPPELDHGKVLPGDALTLPCDDRPAVPPVPLSLRDAIDLGLCHHAQVKAGWARIK 96 DPLLARPP+L G++LPGD + C P V LSL DAID LC Q++A WA IK Sbjct: 37 DPLLARPPDLITGRLLPGDDQRVECAASPYVAGKALSLADAIDQALCQQPQIQAAWAAIK 96 Query: 97 VQAAQKGEARAAYLPTINAGLRHQQERVRQPDAVFTPDAQRVSRSQYYTLTWRLLDFGGR 156 +QAAQ GEARA YLPT+ +G + +R + Y TLTWRLLDFGGR Sbjct: 97 LQAAQLGEARAGYLPTVTSGASKLNSATQYEGG----SGRRSLTTLYATLTWRLLDFGGR 152 Query: 157 AANLRAADALLEAALASHDAILQKTMSNVIAAYYEVQTSGANRQARELNEGLARQIMETT 216 +AN RAADA+L++ALASHDA +QK +++V+A+YYEVQ+S A++QARE ++ LARQ++ET Sbjct: 153 SANQRAADAMLQSALASHDAAVQKALASVVASYYEVQSSSASQQAREKSQQLARQLLETA 212 Query: 217 QRRAARGMAARSDLLQVQTALSKAELEHARAIGQHEKSLITLSIALGLRGRSAQIDVPIG 276 RR RG+ + + LQ +T L+KAELE ARA GQH+K+ L+ A+GL + + V Sbjct: 213 IRREQRGVGSLPETLQARTFLAKAELEQARASGQHKKAQAMLAAAMGLLREAQDVPVLTL 272 Query: 277 SPDSAMDEQQVSQDLAQWSAQAQLHHPALLASRAQLASAREKLAATRAEGLPNVDFSHGY 336 P+ + Q+L W A+ +HPA+LA+RAQL +AREKL R+EG+P +D S Sbjct: 273 VPEQEEYPDGLEQNLPAWLQAARQYHPAILAARAQLEAAREKLQVARSEGMPTLDLSARQ 332 Query: 337 YVNGRPNQGNVGRQTRETVTGLSLNIPIFDGFSHTYKVRSAQAQIDLREAELLEAEGQVI 396 Y NGRPNQ R RE + GL+L +PIF+GF+ YKV AQAQI+ REAEL E + QV+ Sbjct: 333 YANGRPNQAG-NRGDRERMVGLNLTVPIFEGFARDYKVGGAQAQIEAREAELQEVQTQVL 391 Query: 397 GELASAYADNQAAQRNLASSQRLLDSAKLALKDVQRKYERGLSDIIGILNVQAALADASQ 456 G++AS YA+ A +L+SS+RLLD+A+ A+ V+RKY+ G +DI+ +LN Q AL++A Q Sbjct: 392 GDIASTYAEAMTALNSLSSSRRLLDAAQGAVDSVRRKYDAGAADIVEMLNAQTALSEADQ 451 Query: 457 ERIRALAEWRSARLRLLASAGELGR 481 ER++A+++WRSARLRLLA+AG +GR Sbjct: 452 ERVKAMSDWRSARLRLLANAGRMGR 476 >ref|YP_902031.1| outer membrane efflux protein [Pelobacter propionicus DSM 2379] gb|ABK99973.1| outer membrane efflux protein [Pelobacter propionicus DSM 2379] Length = 495 Score = 332 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 220/485 (45%), Positives = 296/485 (61%), Gaps = 16/485 (3%) Query: 3 ARPVAMILMATALSCMTPHGQARDLADLDLTPLEDPLLARPPELDHGKVLPGDALTLPCD 62 A P +L A++ + LA P +DPL P + G LPGD + C Sbjct: 16 AAPGRAMLSLIAIASIALFASLPALAFDPAAPFDDPLRTLPGRIASGTTLPGDGGPVACP 75 Query: 63 DRPAVPPVPLSLRDAIDLGLCHHAQVKAGWARIKVQAAQKGEARAAYLPTINAGLRHQQE 122 + PLSL DA DL LC++ Q+KA WA IK+Q+A+ G+ARAAYLPT++ + + Sbjct: 76 VTRDLA-APLSLIDAADLALCNNPQIKAAWAAIKLQSAEVGQARAAYLPTLSGTINFMRT 134 Query: 123 RVRQPD---AVFTPDAQRVSRSQYYTLTWRLLDFGGRAANLRAADALLEAALASHDAILQ 179 P A T D ++ TL WRL DFGGRAAN +A+ +L AALA HDA LQ Sbjct: 135 HYSYPGSGVASTTEDGTTINA----TLGWRLFDFGGRAANRESANKMLVAALAQHDAALQ 190 Query: 180 KTMSNVIAAYYEVQTSGANRQARELNEGLARQIMETTQRRAARGMAARSDLLQVQTALSK 239 K +++VI +Y++ T+ A+ A+E NE +A +ET QRR RG+ +RSD LQ TAL++ Sbjct: 191 KKLADVIQSYFDAVTAQASLHAKEQNESIAVNTLETAQRREDRGVVSRSDRLQAATALAR 250 Query: 240 AELEHARAIGQHEKSLITLSIALGLRGRSAQIDVPIGSPDSA---MDEQQVSQDLAQWSA 296 A L+ RA G ++K++ L LG+ R+A I PD E + S+ L W Sbjct: 251 ATLDRNRAQGAYQKAVAVLVYVLGIPTRTA-----IALPDELNGDFAESEESKTLDDWLK 305 Query: 297 QAQLHHPALLASRAQLASAREKLAATRAEGLPNVDFSHGYYVNGRPNQGNVGRQTRETVT 356 A HP+LLA RAQ S+ K+AATR+EGLP VDFS YY NG P QG +R T Sbjct: 306 LAAKTHPSLLAGRAQWESSVRKIAATRSEGLPTVDFSANYYQNGYPGQGLSRTDSRITTI 365 Query: 357 GLSLNIPIFDGFSHTYKVRSAQAQIDLREAELLEAEGQVIGELASAYADNQAAQRNLASS 416 GLSL P FDGFS TYK+R+A+AQ + + AE+ E E + E+ A+AD ++ +NL +S Sbjct: 366 GLSLTFPFFDGFSRTYKIRNAEAQAEQQHAEVQETEQNTLMEVVKAHADAGSSLQNLQAS 425 Query: 417 QRLLDSAKLALKDVQRKYERGLSDIIGILNVQAALADASQERIRALAEWRSARLRLLASA 476 ++LLD A+ +L QRKYE+G +DI+ +LN QAALADA QERIR+LAEWRSA+LRLLA Sbjct: 426 KKLLDIAEASLAVSQRKYEKGAADILEVLNTQAALADARQERIRSLAEWRSAKLRLLACV 485 Query: 477 GELGR 481 G LGR Sbjct: 486 GVLGR 490 >ref|NP_521851.1| putative outer membrane CHANEL lipoprotein [Ralstonia solanacearum GMI1000] emb|CAD17441.1| probable typeIsecretion system, outer membrane chanel lipoprotein [Ralstonia solanacearum GMI1000] Length = 488 Score = 327 bits (837), Expect = 4e-87, Method: Composition-based stats. Identities = 203/454 (44%), Positives = 288/454 (63%), Gaps = 14/454 (3%) Query: 35 LEDPLLARPPELDHGKVLPGDALTLPCDDRPAVPPV--PLSLRDAIDLGLCHHAQVKAGW 92 ++DPL ARPP LD G VLP DA +PC PA + PLSL +A+DLGLC++ QVKA W Sbjct: 39 VDDPLFARPPVLDTGAVLPSDAQPIPC---PASGDLAHPLSLSEAVDLGLCNNPQVKAAW 95 Query: 93 ARIKVQAAQKGEARAAYLPTINAGLRHQQERVRQPDAVFTPDAQRVSRSQ--YYTLTWRL 150 A IK+QA GEARAAYLPT+ L R PD P+A S Y L+WRL Sbjct: 96 AAIKIQAGAVGEARAAYLPTLTGSLSAMHTRNEFPD---RPEANSTSNGHTVYLGLSWRL 152 Query: 151 LDFGGRAANLRAADALLEAALASHDAILQKTMSNVIAAYYEVQTSGANRQARELNEGLAR 210 DFG R+AN AA+ LL AA++ HDA LQK +++V+ AY++ T A QAR LAR Sbjct: 153 FDFGARSANREAANLLLAAAISGHDAALQKVLASVVGAYFDALTQQAAMQARTEATRLAR 212 Query: 211 QIMETTQRRAARGMAARSDLLQVQTALSKAELEHARAIGQHEKSLITLSIALGLRGRSAQ 270 +E T+RR RG A +SD LQ +TA +KA+L RA+ K+L L+ ALGL+ +A Sbjct: 213 DTVEATERRERRGAAGQSDTLQARTAFAKAQLAEQRAVADFRKALSALAYALGLQPGTA- 271 Query: 271 IDVPIGSPDSAMDEQQVSQDLAQWSAQAQLHHPALLASRAQLASAREKLAATRAEGLPNV 330 + + A D Q V + LA+W +A HP + ++RAQ +A ++A TRAEGLP + Sbjct: 272 --FQLAELNDATDSQSVGE-LARWLDEAAARHPGIASARAQWDAANARVAKTRAEGLPTI 328 Query: 331 DFSHGYYVNGRPNQGNVGRQTRETVTGLSLNIPIFDGFSHTYKVRSAQAQIDLREAELLE 390 D + +Y NG PNQG + + GL+L IP+F+GF+ TYK+R A+AQ + EA+ + Sbjct: 329 DLTANFYQNGYPNQGLQSTRNNVSTVGLTLTIPLFEGFARTYKIRGAEAQAEQSEAQYED 388 Query: 391 AEGQVIGELASAYADNQAAQRNLASSQRLLDSAKLALKDVQRKYERGLSDIIGILNVQAA 450 + Q++ ++ +AD AA NL +S L+ SA+ ++ +++Y +G +D++ +L+ Q+A Sbjct: 389 TKNQILSDVIKVHADAVAAVDNLRASDVLIRSAQASMVSSEKRYAKGAADVLELLSTQSA 448 Query: 451 LADASQERIRALAEWRSARLRLLASAGELGRTRI 484 L DA QER+R L+EWR+ARLRL+A+AG LGR R+ Sbjct: 449 LMDAMQERVRCLSEWRAARLRLMATAGVLGRERL 482 >ref|ZP_00942881.1| Type I secretion outer membrane protein [Ralstonia solanacearum UW551] gb|EAP74635.1| Type I secretion outer membrane protein [Ralstonia solanacearum UW551] Length = 494 Score = 326 bits (836), Expect = 5e-87, Method: Composition-based stats. Identities = 209/479 (43%), Positives = 294/479 (61%), Gaps = 16/479 (3%) Query: 10 LMATALSCMTPHGQA--RDLADLDLTPLEDPLLARPPELDHGKVLPGDALTLPCDDRPAV 67 L+ +L C QA R L DL ++DPL ARPP LD G VLP DA +PC R Sbjct: 22 LLLGSLCCGVVSTQAWGRSLGDL----VDDPLFARPPVLDTGAVLPSDAQPIPCPAR-GD 76 Query: 68 PPVPLSLRDAIDLGLCHHAQVKAGWARIKVQAAQKGEARAAYLPTINAGLRHQQERVRQP 127 PL+L +A+DLGLC++ QVKA WA IK+QA GEARAAYLPT+ L R P Sbjct: 77 LAAPLALAEAVDLGLCNNPQVKAAWAAIKIQAGAVGEARAAYLPTLTGSLSAMHTRNEFP 136 Query: 128 DAVFTPDAQRVS--RSQYYTLTWRLLDFGGRAANLRAADALLEAALASHDAILQKTMSNV 185 D P+A S + Y L+WRL DFG R+AN AA+ +L AA++ HDA LQK ++ V Sbjct: 137 D---RPEANTSSDGHTVYLGLSWRLFDFGARSANREAANLMLAAAISGHDAALQKVLAAV 193 Query: 186 IAAYYEVQTSGANRQARELNEGLARQIMETTQRRAARGMAARSDLLQVQTALSKAELEHA 245 + AY++ T A QAR LAR +E T+RR RG A +SD LQ +TA +KA+L Sbjct: 194 VGAYFDALTQQAAMQARTEATRLARDTVEATERRERRGAAGQSDTLQARTAFAKAQLAEQ 253 Query: 246 RAIGQHEKSLITLSIALGLRGRSAQIDVPIGSPDSAMDEQQVSQDLAQWSAQAQLHHPAL 305 RA K+L L ALGL +A + + A D Q V + LA+W +A HP + Sbjct: 254 RATADFRKALSALGYALGLPPGTA---FQLAELNDATDSQSVGE-LARWLDEAAARHPGI 309 Query: 306 LASRAQLASAREKLAATRAEGLPNVDFSHGYYVNGRPNQGNVGRQTRETVTGLSLNIPIF 365 ++RAQ +A+ ++ TRAEGLP VDF+ +Y NG PNQG + + G++L IP+F Sbjct: 310 ASARAQWDAAKARVDKTRAEGLPTVDFTANFYQNGYPNQGLQSTRNNVSTVGVTLTIPLF 369 Query: 366 DGFSHTYKVRSAQAQIDLREAELLEAEGQVIGELASAYADNQAAQRNLASSQRLLDSAKL 425 +GFS TYK+R A+AQ + EA+ + + Q++ ++ +AD AA NL +S L+ SA+ Sbjct: 370 EGFSRTYKIRGAEAQAEQSEAQYEDTKNQILSDVIKVHADAVAAVDNLQASDVLIHSAQA 429 Query: 426 ALKDVQRKYERGLSDIIGILNVQAALADASQERIRALAEWRSARLRLLASAGELGRTRI 484 ++ +++Y +G +D++ +L+ Q+AL DA QER+R L+EWR+ARLRL+A+AG LGR + Sbjct: 430 SMVSSEKRYAKGAADVLELLSTQSALTDAMQERVRCLSEWRAARLRLMATAGVLGREHL 488 >emb|CCA87572.1| putative Outer membrane efflux protein precursor [Ralstonia syzygii R24] Length = 494 Score = 326 bits (835), Expect = 7e-87, Method: Composition-based stats. Identities = 203/452 (44%), Positives = 286/452 (63%), Gaps = 10/452 (2%) Query: 35 LEDPLLARPPELDHGKVLPGDALTLPCDDRPAVPPVPLSLRDAIDLGLCHHAQVKAGWAR 94 ++DPL ARPP LD G VLP DA +PC R + PL+L +A+DLGLC++ QVKA WA Sbjct: 45 VDDPLFARPPVLDTGAVLPSDAQPIPCPARGDLT-APLALGEAVDLGLCNNPQVKAAWAA 103 Query: 95 IKVQAAQKGEARAAYLPTINAGLRHQQERVRQPDAVFTPDAQRVSRSQ--YYTLTWRLLD 152 IK+QA GEARAAYLPT+ L + R P+ P+A S Y WRL D Sbjct: 104 IKIQAGAVGEARAAYLPTLTGSLSAMRTRNEFPE---RPEANSTSSGHTVYLGFNWRLFD 160 Query: 153 FGGRAANLRAADALLEAALASHDAILQKTMSNVIAAYYEVQTSGANRQARELNEGLARQI 212 FG R+AN +AAD LL AA++ HDA LQK +++V+ AY++ T A QAR LAR Sbjct: 161 FGARSANRKAADLLLAAAISGHDAALQKVLASVVGAYFDALTQQAAMQARAEATRLARDT 220 Query: 213 METTQRRAARGMAARSDLLQVQTALSKAELEHARAIGQHEKSLITLSIALGLRGRSAQID 272 +E T+RR RG A +SD LQ +TA +KA+L RA+ K+L L+ ALGLR +A Sbjct: 221 VEATERRERRGAAGQSDTLQARTAFAKAQLAEQRAMADFRKALSALAYALGLRPGTA--- 277 Query: 273 VPIGSPDSAMDEQQVSQDLAQWSAQAQLHHPALLASRAQLASAREKLAATRAEGLPNVDF 332 + + A D Q V + LA+W +A HP + A+R Q +A ++A TRAEGLP +DF Sbjct: 278 FQLAELNDATDSQSVGE-LARWLDEAAARHPGIAAARVQWDAANARVAKTRAEGLPTLDF 336 Query: 333 SHGYYVNGRPNQGNVGRQTRETVTGLSLNIPIFDGFSHTYKVRSAQAQIDLREAELLEAE 392 + +Y NG PNQG + + G++L IP+F+GFS TYK+R A+AQ + EA+ + + Sbjct: 337 TANFYQNGYPNQGLQNTRNNVSTVGVTLTIPLFEGFSRTYKIRGAEAQAEQSEAQYEDTK 396 Query: 393 GQVIGELASAYADNQAAQRNLASSQRLLDSAKLALKDVQRKYERGLSDIIGILNVQAALA 452 Q++ ++ +AD AA NL +S L+ SA+ A+ +++Y +G +D++ +L+ Q+AL Sbjct: 397 NQILSDVIKVHADAVAAVDNLQASDVLIRSAQAAMVSSEKRYAKGAADMLELLSTQSALI 456 Query: 453 DASQERIRALAEWRSARLRLLASAGELGRTRI 484 DA QER+R L+EWRSARLRL+A+AG LGR + Sbjct: 457 DAMQERVRCLSEWRSARLRLMATAGVLGREHL 488