BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4329.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776844.1| enhanced serine sensitivity protein [Herbasp... 415 e-114 ref|ZP_07949298.1| SseB protein [Enterobacteriaceae bacterium 9_... 137 3e-30 ref|ZP_03826352.1| enhanced serine sensitivity protein SseB [Pec... 136 4e-30 ref|YP_004502234.1| SseB family protein [Serratia sp. AS12] >gi|... 134 1e-29 ref|YP_051318.1| enhanced serine sensitivity protein SseB [Pecto... 134 2e-29 >ref|YP_003776844.1| enhanced serine sensitivity protein [Herbaspirillum seropedicae SmR1] gb|ADJ64936.1| enhanced serine sensitivity protein [Herbaspirillum seropedicae SmR1] Length = 264 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 210/264 (79%), Positives = 236/264 (89%), Gaps = 1/264 (0%) Query: 65 MQAESSPAVTPLEEALRRAHEDPEARPAFYRMLLESTVFVRGNLPPDGNREQVQIMRWPG 124 MQAE+SP+++PLEEAL RA DPEARPAFYRMLL+STVFVRGN PPDGNREQVQIMRWPG Sbjct: 1 MQAETSPSLSPLEEALLRARGDPEARPAFYRMLLDSTVFVRGNPPPDGNREQVQIMRWPG 60 Query: 125 EDGEMMLPMFSSMEEIGQAFEEGASCLGMTVRELFRMCGDGRTIFILYPDSPLPKYFVPG 184 +DG MMLPMFSS+ EI QAF++ ASC+GMTVRELFRMCGDGRTIFILYPDSP KYFVPG Sbjct: 61 DDGAMMLPMFSSLLEIEQAFDKDASCVGMTVRELFRMCGDGRTIFILYPDSPHAKYFVPG 120 Query: 185 EVAHVLQQDNGGVPPSRDM-GGANVQLGVPDQPPQAMLDALSAFFTRHDKVKAAYLALMH 243 EVAHVLQ+DNGGVP +R++ GG +VQLG P QPPQAML+ALS F RHDKVKAAYL++MH Sbjct: 121 EVAHVLQEDNGGVPVAREVGGGGSVQLGSPAQPPQAMLEALSTLFARHDKVKAAYLSMMH 180 Query: 244 NPGHDPQPTLVIGVDLPASHMERLMREITPVIAEHGPANAPVDMLRVEAGNSIADFMLTE 303 +P HDPQP LV+G+DLPASHMER+MRE+ PVIA+H PAN VDMLRVE GN IAD+ML E Sbjct: 181 DPAHDPQPALVVGIDLPASHMERVMREVGPVIAQHAPANTAVDMLRVEPGNGIADYMLAE 240 Query: 304 TKPFYERRQPERVGFFKSLFGGGR 327 TKPFYER+Q ERVGFFKSLFGGGR Sbjct: 241 TKPFYERQQRERVGFFKSLFGGGR 264 >ref|ZP_07949298.1| SseB protein [Enterobacteriaceae bacterium 9_2_54FAA] gb|EFV41732.1| SseB protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 278 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 92/250 (36%), Positives = 141/250 (56%), Gaps = 17/250 (6%) Query: 76 LEEALRRAHEDPEARPAFYRMLLESTVFV--------RGNLPPDGNREQVQIMRWPGEDG 127 LE++L +A +DP R FYR LL+STV++ +G L N E + I W +DG Sbjct: 17 LEKSLEKAVKDPAYRTLFYRTLLDSTVYILAESGVQDKGELIIAPNAE-LNIQHWEMQDG 75 Query: 128 EMMLPMFSSMEEIGQAFE-EGASCLGMTVRELFRMCGDGRTIFILYPDSPLPKYFVPGEV 186 +P FSS++ + QA E E + + VR+LF M G +F L P K F P EV Sbjct: 76 LSTIPFFSSLKMLQQAVEDEEQPFMALPVRDLFAMT-KGAQLF-LNPKCEYGKAFYPQEV 133 Query: 187 AHVLQQDNGGVPPSRDM-GGANVQLGVPDQPPQAMLDALSAFFTRHDKVKAAYLALMHNP 245 A +LQ P + + GG+ + LG P++ P AM+DAL+ FT+ V+ AYLAL + Sbjct: 134 AMLLQTGGMAQPMEQVIDGGSKILLGQPEEYPSAMVDALTTLFTQRKIVRNAYLALFQDQ 193 Query: 246 GHDPQPTLVIGVDLPAS--HMERLMREITPVIAEHGPANAPVDMLRV--EAGNSIADFML 301 D +P L+IG+++ S +E L++E + +E P PVD+ V E G++++ ++ Sbjct: 194 TADEKPNLLIGLEIDGSDAEIELLIQETGSLASETAPEEEPVDLCLVTDEKGDAVSHYLK 253 Query: 302 TETKPFYERR 311 T T+PFY+RR Sbjct: 254 THTQPFYQRR 263 >ref|ZP_03826352.1| enhanced serine sensitivity protein SseB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 264 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 130/247 (52%), Gaps = 16/247 (6%) Query: 76 LEEALRRAHEDPEARPAFYRMLLESTVFVRGNLPPDGNRE---------QVQIMRWPGED 126 LEE L A +P RP F+ L+E+TVFV GN DG+ V I W +D Sbjct: 9 LEEVLILAATEPAHRPEFFSELMEATVFVLGN-TDDGDESGEVVLHAGSNVNIQHWEKDD 67 Query: 127 GEMMLPMFSSMEEIGQAFEEGASCLGMTVRELFRMCGDGRTIFILYPDSPLPKYFVPGEV 186 G +P FSS+E + EE A+ L + R LF M G T+F L P P K F+P E+ Sbjct: 68 GSSAIPFFSSLEALQSVIEEEAAFLALPTRSLFEMT-QGVTLF-LNPKLPYGKEFLPQEI 125 Query: 187 AHVLQQDNGGVPPSRDMGGA-NVQLGVPDQPPQAMLDALSAFFTRHDKVKAAYLALMHNP 245 H+L + G R + V L P + P M+D+L+ FT+H VK A+LA + P Sbjct: 126 EHILSGEGNGFVQQRVVEEEMQVILSQPAEMPAQMIDSLTQLFTKHRHVKRAFLAQIQEP 185 Query: 246 GHDPQPTLVIGVDLPASHMERLMREITPVIAEHGPANAPVDMLRVEAGNS-IADFMLTET 304 G + QP L+IG+D E ++RE V ++ P PVD+ V+ G S I+ +M+ T Sbjct: 186 GEE-QPHLLIGIDADQDE-EIIIREAGSVASDTLPDERPVDLCLVKDGESGISHYMIKHT 243 Query: 305 KPFYERR 311 PFYER+ Sbjct: 244 TPFYERK 250 >ref|YP_004502234.1| SseB family protein [Serratia sp. AS12] ref|YP_004507186.1| SseB family protein [Serratia sp. AS9] gb|AEF46925.1| SseB family protein [Serratia sp. AS9] gb|AEF51877.1| SseB family protein [Serratia sp. AS12] gb|AEG29584.1| SseB family protein [Serratia sp. AS13] Length = 276 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 140/261 (53%), Gaps = 14/261 (5%) Query: 63 SAMQAESSPAVTPLEEALRRAHEDPEARPAFYRMLLESTVFVRGN---LPPDGN-----R 114 S+ +++P LE L+ A +P RPAF+R LL++TV + G+ + DG+ Sbjct: 2 SSHHHDAAPGENELERLLKLAVTEPAHRPAFFRELLDATVLILGDSDQVQQDGDITLNAD 61 Query: 115 EQVQIMRWPGEDGEMMLPMFSSMEEIGQAFEEGASCLGMTVRELFRMCGDGRTIFILYPD 174 V I W +DG ++P FSS+E + +A E+ + M R LF + +G +F L P Sbjct: 62 TPVNIQHWEKQDGGSIIPFFSSLEALQKAVEDEQPFIAMPARVLFEIT-EGADLF-LNPK 119 Query: 175 SPLPKYFVPGEVAHVLQQDNGGVPPSRDMG-GANVQLGVPDQPPQAMLDALSAFFTRHDK 233 + K F P EVA +L P R + + LG P++ P AM+DAL+ F++ Sbjct: 120 AEYGKEFYPEEVAMLLATGGVAKPAERYIDKDTQILLGQPEEYPSAMVDALTTLFSQRKP 179 Query: 234 VKAAYLALMHNPGHDPQPTLVIG--VDLPASHMERLMREITPVIAEHGPANAPVDMLRV- 290 V+ A+LALMH+ D +P L++G VD +E L+ E V +E P + PVD V Sbjct: 180 VRRAFLALMHDQAVDEKPNLLVGLEVDGDQGDIEALINEAGSVASETAPNDEPVDFCLVS 239 Query: 291 EAGNSIADFMLTETKPFYERR 311 E ++ +++T T+PFY+RR Sbjct: 240 EKERGVSHYLITHTQPFYQRR 260 >ref|YP_051318.1| enhanced serine sensitivity protein SseB [Pectobacterium atrosepticum SCRI1043] emb|CAG76127.1| enhanced serine sensitivity protein [Pectobacterium atrosepticum SCRI1043] Length = 264 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 93/250 (37%), Positives = 132/250 (52%), Gaps = 22/250 (8%) Query: 76 LEEALRRAHEDPEARPAFYRMLLESTVFVRGNLPPDGNRE---------QVQIMRWPGED 126 LEE L A +P RP F+ L+E+TVFV G+ DG+ V I W +D Sbjct: 9 LEEVLILAAMEPAHRPEFFSELMEATVFVLGS-TDDGDESGETVLHAGSNVNIQHWEKDD 67 Query: 127 GEMMLPMFSSMEEIGQAFEEGASCLGMTVRELFRMCGDGRTIFILYPDSPLPKYFVPGEV 186 G +P FSS+E + E AS L + VR LF + G T+F L P P K F+P E+ Sbjct: 68 GSSAIPFFSSLEALQSVITEEASFLALPVRSLFEIT-QGVTLF-LNPKLPYGKEFLPQEI 125 Query: 187 AHVLQQDNGGVPPSR----DMGGANVQLGVPDQPPQAMLDALSAFFTRHDKVKAAYLALM 242 H+L + G R DM V L P + P M+D+L+ FT+H VK A+LA + Sbjct: 126 EHILSGEGNGFVQQRVVEDDM---QVMLSQPAEMPAQMIDSLTQLFTKHRHVKRAFLAQI 182 Query: 243 HNPGHDPQPTLVIGVDLPASHMERLMREITPVIAEHGPANAPVDMLRVEAGN-SIADFML 301 PG + QP L+IG+D+ E ++RE V ++ P + PVD+ V+ G I+ +M+ Sbjct: 183 QEPGEE-QPHLLIGIDVDQDE-ETIIREAGSVASDTLPDDRPVDLCLVKEGEPGISHYMI 240 Query: 302 TETKPFYERR 311 T PFYER+ Sbjct: 241 KHTTPFYERK 250