BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4327.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776842.1| LysR family transcription regulator protein ... 401 e-110 ref|YP_001352876.1| LysR family transcriptional regulator [Janth... 400 e-109 ref|ZP_06689535.1| LysR family transcriptional regulator [Achrom... 332 5e-89 gb|EFV85048.1| LysR family Transcriptional regulator [Achromobac... 332 6e-89 gb|EGP47526.1| HTH-type transcriptional regulator YnfL 3 [Achrom... 325 8e-87 >ref|YP_003776842.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64934.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 219/305 (71%), Positives = 252/305 (82%) Query: 4 SIDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRLLERELGVTLFNRLPRGMELTE 63 SIDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIR+LERELGVTLFNRLPRGMELT+ Sbjct: 18 SIDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRVLERELGVTLFNRLPRGMELTD 77 Query: 64 SGQALLTDARQILAQVDSTVAGVRRIARGELGRIAVGFTESASLHPFVPTVIRAFRDAVP 123 SG ALL DAR +LAQ+D+TVA VRRIA+G++GRIAVGFTESASLHPFV +VIRAFR P Sbjct: 78 SGAALLIDARALLAQLDTTVASVRRIAQGKMGRIAVGFTESASLHPFVHSVIRAFRADAP 137 Query: 124 DVALTVEESSTTDLVALMSQNRIDVAFIRSPVGDVSDITIETMMVEEMIVALPAAHPLVR 183 DVA+TVEES+T +L+ + R+D+AF+RSPVGD +TIETM+ E+M+ ALP HPLV Sbjct: 138 DVAMTVEESNTNELIEALRGKRLDLAFVRSPVGDSGGLTIETMLEEDMVAALPIDHPLVD 197 Query: 184 NKRRKSVALAALAEEVFILNRRPNGPGLYDTIIAACRAAGFSPRVEQEARKNLSTLSLVA 243 +RKS+AL ALAEE FI+ RRPNGPGLYDTIIAAC AAGFSP+V QEARKNLSTLSLVA Sbjct: 198 GGKRKSIALHALAEESFIMTRRPNGPGLYDTIIAACHAAGFSPQVIQEARKNLSTLSLVA 257 Query: 244 AGLGISIIPASMRHVELESVSYLGIDDAPDLKAPLHLAYRDSGQSGAVKRFIAEARKCAK 303 AG+G+++IPASM V E V YL + APDLKAPLHLAYR SGA + EA K + Sbjct: 258 AGVGVTVIPASMTRVNAEGVVYLKLTGAPDLKAPLHLAYRTGSISGAARLMREEALKLSA 317 Query: 304 AAGKR 308 +R Sbjct: 318 GRKRR 322 >ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR90151.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 301 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 218/300 (72%), Positives = 255/300 (85%), Gaps = 2/300 (0%) Query: 4 SIDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRLLERELGVTLFNRLPRGMELTE 63 SIDLRLLRYF+ VAEEGHLTKAA+RIGIQQPPLSQQIR LE+ELGVTLF R+PRGMELTE Sbjct: 3 SIDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTE 62 Query: 64 SGQALLTDARQILAQVDSTVAGVRRIARGELGRIAVGFTESASLHPFVPTVIRAFRDAVP 123 SGQALL DAR IL QV++T+ GVRRI+ GE GR+AVGFTESA+LHPF+P VIRAFR P Sbjct: 63 SGQALLIDARLILEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAVIRAFRQKSP 122 Query: 124 DVALTVEESSTTDLVALMSQNRIDVAFIRSPVGDVSDITIETMMVEEMIVALPAAHPLVR 183 V + VEES+T +LV + NR+DVAFIRSP+G + + +ETM+VEEMIVALP H L Sbjct: 123 GVIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPITHRLA- 181 Query: 184 NKRRKSVALAALAEEVFILNRRPNGPGLYDTIIAACRAAGFSPRVEQEARKNLSTLSLVA 243 +RRKS+ L ALAE+ FILNRRP+GPGLYD++IAACRAAGFSPRV QEA+KNLSTLSLVA Sbjct: 182 -QRRKSLPLTALAEDDFILNRRPSGPGLYDSVIAACRAAGFSPRVVQEAKKNLSTLSLVA 240 Query: 244 AGLGISIIPASMRHVELESVSYLGIDDAPDLKAPLHLAYRDSGQSGAVKRFIAEARKCAK 303 AGLG+SI+PASMRHV+L+ V YL ++ APDL+APLHLAYRD QSGA +R I EARK A+ Sbjct: 241 AGLGVSIVPASMRHVQLKEVVYLKLEQAPDLRAPLHLAYRDEPQSGAAERMIIEARKLAQ 300 >ref|ZP_06689535.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF73426.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 310 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 178/297 (59%), Positives = 229/297 (77%) Query: 4 SIDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRLLERELGVTLFNRLPRGMELTE 63 S+DLRLLRYF+AVAEE HLTKAA R+GI+QPPLSQQIR+LE+ELGVTLF+RLPRGMELTE Sbjct: 3 SVDLRLLRYFLAVAEEAHLTKAAARLGIRQPPLSQQIRVLEQELGVTLFHRLPRGMELTE 62 Query: 64 SGQALLTDARQILAQVDSTVAGVRRIARGELGRIAVGFTESASLHPFVPTVIRAFRDAVP 123 SG+AL+ DAR I+A VD V GVRR+++GE GR+ VGFT SA+ HPFVP+VIR FR++ P Sbjct: 63 SGRALVDDARNIIAMVDQAVDGVRRVSQGEAGRLTVGFTGSAAFHPFVPSVIRRFRESAP 122 Query: 124 DVALTVEESSTTDLVALMSQNRIDVAFIRSPVGDVSDITIETMMVEEMIVALPAAHPLVR 183 +V L +EESST +L + R+DVAFIR G + + ET++ E M+ A PA HP V+ Sbjct: 123 NVRLVLEESSTGELREAVCDGRVDVAFIRGSHGTGAGVCEETVLEETMLAAFPADHPAVK 182 Query: 184 NKRRKSVALAALAEEVFILNRRPNGPGLYDTIIAACRAAGFSPRVEQEARKNLSTLSLVA 243 + R+ +AL+ LAEE IL RR +GPGLYD II AC A+GFSPRV QEA + LSTLSLVA Sbjct: 183 GRDRRQIALSELAEESLILYRRHSGPGLYDAIITACSASGFSPRVAQEAPRMLSTLSLVA 242 Query: 244 AGLGISIIPASMRHVELESVSYLGIDDAPDLKAPLHLAYRDSGQSGAVKRFIAEARK 300 AGLG+S++PAS+R V +E V Y+ + L+AP++L +RD+ SGA ++ I E R+ Sbjct: 243 AGLGVSLVPASLRRVNIEGVVYVNVTGPVALRAPMNLIWRDAPMSGATRKLIDEVRR 299 >gb|EFV85048.1| LysR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 308 Score = 332 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 182/296 (61%), Positives = 229/296 (77%) Query: 4 SIDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRLLERELGVTLFNRLPRGMELTE 63 S+DLRLLRYF+AVAEE HLTKAA R+GI+QPPLSQQIR+LE+ELGVTLF+RLPRGMELTE Sbjct: 3 SVDLRLLRYFLAVAEESHLTKAAARLGIRQPPLSQQIRVLEQELGVTLFHRLPRGMELTE 62 Query: 64 SGQALLTDARQILAQVDSTVAGVRRIARGELGRIAVGFTESASLHPFVPTVIRAFRDAVP 123 SG+ALL DAR ILA VD V GVRR++ GE GR+ VGFT SA+ HPFVP++IR FR+ P Sbjct: 63 SGRALLADARSILALVDQAVDGVRRVSLGESGRLTVGFTGSAAFHPFVPSLIRRFRENAP 122 Query: 124 DVALTVEESSTTDLVALMSQNRIDVAFIRSPVGDVSDITIETMMVEEMIVALPAAHPLVR 183 V L +EESST +L+ + R+DVAFIR G + +ET++ E M+ A PA HP+V+ Sbjct: 123 QVRLVLEESSTGELMEDVRDGRVDVAFIRGAHGVDRGVAVETVLEESMLAAFPADHPMVK 182 Query: 184 NKRRKSVALAALAEEVFILNRRPNGPGLYDTIIAACRAAGFSPRVEQEARKNLSTLSLVA 243 + RK +AL+ LA+E IL RR NGPGLYD II+ACRAAGFSPRV QEA + LSTLSLVA Sbjct: 183 GRARKRIALSELADESLILYRRHNGPGLYDAIISACRAAGFSPRVAQEAPRMLSTLSLVA 242 Query: 244 AGLGISIIPASMRHVELESVSYLGIDDAPDLKAPLHLAYRDSGQSGAVKRFIAEAR 299 AGLG+S++PAS+R V +E V Y+ + ++APL L +RD+ +GA++R I E R Sbjct: 243 AGLGVSLVPASLRRVNIEGVVYVNVSGPVAMRAPLTLIWRDAPLTGAIRRLIEEVR 298 >gb|EGP47526.1| HTH-type transcriptional regulator YnfL 3 [Achromobacter xylosoxidans AXX-A] Length = 299 Score = 325 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 178/291 (61%), Positives = 224/291 (76%) Query: 9 LLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRLLERELGVTLFNRLPRGMELTESGQAL 68 +LRYF+AVAEE HLTKAA R+GI+QPPLSQQIR+LE+ELGVTLF+RLPRGMELTESG+AL Sbjct: 1 MLRYFLAVAEESHLTKAAARLGIRQPPLSQQIRVLEQELGVTLFHRLPRGMELTESGRAL 60 Query: 69 LTDARQILAQVDSTVAGVRRIARGELGRIAVGFTESASLHPFVPTVIRAFRDAVPDVALT 128 L DAR ILA VD V GVRR++ GE GR+ VGFT SA+ HPFVP+VIR FR++ P V L Sbjct: 61 LADARSILALVDQAVDGVRRVSLGEAGRLTVGFTGSAAFHPFVPSVIRRFRESAPQVRLV 120 Query: 129 VEESSTTDLVALMSQNRIDVAFIRSPVGDVSDITIETMMVEEMIVALPAAHPLVRNKRRK 188 +EESST +L+ + R+DVAFIR G + +E+++ E M+ A PA HP+V+ + RK Sbjct: 121 LEESSTGELMEDVRAGRVDVAFIRGAHGADRGVAVESVLEETMLAAFPADHPMVKGRTRK 180 Query: 189 SVALAALAEEVFILNRRPNGPGLYDTIIAACRAAGFSPRVEQEARKNLSTLSLVAAGLGI 248 +AL+ LAEE IL RR +GPGLYD II+ CRAAGFSPRV QEA + LSTLSLVAAGLG+ Sbjct: 181 RIALSELAEESLILYRRHSGPGLYDAIISGCRAAGFSPRVAQEAPRVLSTLSLVAAGLGV 240 Query: 249 SIIPASMRHVELESVSYLGIDDAPDLKAPLHLAYRDSGQSGAVKRFIAEAR 299 S++PAS+R V +E V Y+ + +L+APL L +RD+ SGA +R I E R Sbjct: 241 SLVPASLRRVNIEGVVYVNVSGPVELRAPLTLIWRDAPLSGATRRLIEEVR 291