BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4320.p (409 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776835.1| membrane-fusion protein [Herbaspirillum sero... 639 0.0 ref|YP_004752088.1| hypothetical protein CFU_1433 [Collimonas fu... 352 7e-95 ref|YP_932116.1| periplasmic component of efflux system [Azoarcu... 228 1e-57 ref|YP_158026.1| hypothetical protein ebA1846 [Aromatoleum aroma... 227 3e-57 ref|YP_003279785.1| macrolide-specific efflux protein macA [Coma... 219 7e-55 >ref|YP_003776835.1| membrane-fusion protein [Herbaspirillum seropedicae SmR1] gb|ADJ64927.1| membrane-fusion protein [Herbaspirillum seropedicae SmR1] Length = 402 Score = 639 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 364/393 (92%), Positives = 377/393 (95%) Query: 7 MTEPHDQLPHVVPTTHAPARQKAWWSVVALVLVLGGGYALYARQSPPPAPPKPIPVKLAT 66 MTEPHD LPH+VPTTHAP RQKAWWS VALV+VLGGGY LY+RQ PPP PKPIPVKL T Sbjct: 1 MTEPHDPLPHIVPTTHAPTRQKAWWSSVALVIVLGGGYWLYSRQQPPPPAPKPIPVKLET 60 Query: 67 VAVERADLEQVVNATGNVVAQDYVDVGSKVAGQISDVEVVIGEAVKAGRLLATVAPAVQN 126 V VERADLEQVVNATGNVVAQDYVDVGSKVAGQISDV+VV+GE VKAG+LLATVAPAVQ+ Sbjct: 61 VTVERADLEQVVNATGNVVAQDYVDVGSKVAGQISDVDVVVGETVKAGKLLATVAPAVQS 120 Query: 127 SRIESNRATLARLKAELAGQNAQLDFAQLQFQRQTQLKAENATREESYESSRMNMYAAAS 186 SRIE+NRATLARLKAELAGQNAQLDFAQLQFQRQTQLKAENATREESYESSRMNMYAAA+ Sbjct: 121 SRIENNRATLARLKAELAGQNAQLDFAQLQFQRQTQLKAENATREESYESSRMNMYAAAA 180 Query: 187 RVDATNAQIQQTEAAIREDEAVQKQTRIEAPVSGTIVTLNARPGQMVSANQEVLMRIADL 246 RVDATNAQIQQTEAAIREDEAVQKQTRIEAPVSGTIVTLNARPGQMV+ANQE LMRIADL Sbjct: 181 RVDATNAQIQQTEAAIREDEAVQKQTRIEAPVSGTIVTLNARPGQMVAANQEALMRIADL 240 Query: 247 SRMTVQVPVSEEDVTRLQKGMTAYFTTPGYPGKRWSGKLRQIMLLPTDDSGRQGKKAYYT 306 SRMTVQVPV+EEDVTRLQKGMTAYFTTPGYPGKRWSGKLRQIMLLPTDDSGRQGKKA+YT Sbjct: 241 SRMTVQVPVAEEDVTRLQKGMTAYFTTPGYPGKRWSGKLRQIMLLPTDDSGRQGKKAFYT 300 Query: 307 VLFDVANPSRELMSGMSADVYFVLARAEHVPAIPRSLVTKPGMDGTQTVKVVLADGTLET 366 V FDVANPSRELMSGMSADVYFVLARAEHVP IPR+LVTKPGMDGTQTVKVVLADG LET Sbjct: 301 VFFDVANPSRELMSGMSADVYFVLARAEHVPTIPRTLVTKPGMDGTQTVKVVLADGKLET 360 Query: 367 RKIKIGIRDGERAQVLSGLKEGEQVLLPANPPA 399 RKIKIGIRD ERAQVLSGLKEGEQVLLPANP A Sbjct: 361 RKIKIGIRDNERAQVLSGLKEGEQVLLPANPAA 393 >ref|YP_004752088.1| hypothetical protein CFU_1433 [Collimonas fungivorans Ter331] gb|AEK61265.1| hypothetical protein CFU_1433 [Collimonas fungivorans Ter331] Length = 423 Score = 352 bits (903), Expect = 7e-95, Method: Composition-based stats. Identities = 210/387 (54%), Positives = 282/387 (72%), Gaps = 5/387 (1%) Query: 9 EPHDQLPHVVPTTHAPARQKAWWSVVALVLVLGGGY-ALYARQSPPPAPPKPIPVKLATV 67 EP D+ P +PT + ++ +++AL++ G G+ L A PP PKP PV+L T Sbjct: 12 EPTDKSP--LPTAFGHSGRRWLTAILALLIAAGAGFLVLKAFGQRPPPAPKPAPVRLQTE 69 Query: 68 AVERADLEQVVNATGNVVAQDYVDVGSKVAGQISDVEVVIGEAVKAGRLLATVAPAVQNS 127 V R D+EQ V A+G + Y DV ++ +GQI DV V +G+ VKAG+++ + P + ++ Sbjct: 70 TVRRGDIEQAVFASGKLQLHKYSDVVAQASGQIKDVLVSVGDEVKAGKIVVEITPTLPSA 129 Query: 128 RIESNRATLARLKAELAGQNAQLDFAQLQFQRQTQLKAENATREESYESSRMNMYAAASR 187 R+ESNRA LARL+AELA Q AQLDFA+LQ++RQTQLKAENATREES+ESSRM+MY+AA+R Sbjct: 130 RLESNRAQLARLQAELADQRAQLDFAELQYKRQTQLKAENATREESFESSRMSMYSAAAR 189 Query: 188 VDATNAQIQQTEAAIREDEAVQKQTRIEAPVSGTIVTLNARPGQMVSANQEV--LMRIAD 245 V+A NAQI+QTE+ +++DE + T++ AP+SGT+V++ ARPGQ++ A Q V L+RIAD Sbjct: 190 VEAINAQIRQTESTMKDDEETRSHTQVAAPISGTVVSVAARPGQVIGAGQTVAPLLRIAD 249 Query: 246 LSRMTVQVPVSEEDVTRLQKGMTAYFTTPGYPGKRWSGKLRQIMLLPTDDSGRQGKKAYY 305 L R+TVQ V+E DV L+KGMTAYFTTPGYPGK W+GKLRQ++ +P D SG QGK+ +Y Sbjct: 250 LGRLTVQARVAEIDVPLLRKGMTAYFTTPGYPGKHWAGKLRQVVPVPADSSGEQGKQTFY 309 Query: 306 TVLFDVANPSRELMSGMSADVYFVLARAEHVPAIPRSLVTKPGMDGTQTVKVVLADGTLE 365 VLF+V NP +ELMSGMSA V FVLA+A +P +L+ KP DG V V A + Sbjct: 310 NVLFEVDNPQQELMSGMSAQVRFVLAQARDAVLLPAALLGKPDTDGNYLVNVAGAGQQVS 369 Query: 366 TRKIKIGIRDGERAQVLSGLKEGEQVL 392 RKIKIGIR+ + AQVLSGL+ GEQV+ Sbjct: 370 PRKIKIGIRNEQTAQVLSGLEPGEQVV 396 >ref|YP_932116.1| periplasmic component of efflux system [Azoarcus sp. BH72] emb|CAL93229.1| periplasmic component of efflux system [Azoarcus sp. BH72] Length = 383 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 151/365 (41%), Positives = 224/365 (61%), Gaps = 33/365 (9%) Query: 69 VERADLEQVVNATGNVVAQDYVDVGSKVAGQISDVEVVIGEAVKAGRLLATVAPAVQNSR 128 V R D+E VV ATG + ++YVDVG++V+GQ+ + V +G VK G LL + V S+ Sbjct: 16 VSRGDIEDVVTATGTLQPREYVDVGAQVSGQLKKIHVEVGSLVKNGDLLGEIDSTVYLSK 75 Query: 129 IESNRATLARLKAELAGQNAQLDFAQLQFQRQTQLKAENATREESYESSRMNMYAAASRV 188 ++++RA L L+A+L + AQ+ AQ+QF+RQT L AE+AT E+ +++ + +A +++ Sbjct: 76 VDASRAQLRNLRAQLKEREAQVALAQVQFKRQTALMAEDATTTETLQTAEATLKSAEAQL 135 Query: 189 DATNAQIQQTEAAIREDEAVQKQTRIEAPVSGTIVTLNARPGQMVSANQE--VLMRIADL 246 +A AQI+Q E+ +R DEA + RI +P++GT+V++ AR GQ ++ NQ ++R+ADL Sbjct: 136 EALRAQIEQYESTLRGDEANLQYARIMSPMTGTVVSITARQGQTLNTNQSAPTILRVADL 195 Query: 247 SRMTVQVPVSEEDVTRLQKGMTAYFTTPGYPGKRWSGKLRQIMLLPTDDSGRQGKKAYYT 306 + MTVQ VSE DV+RL+ GM AYFTT G GKRW GKL +I PT Y Sbjct: 196 TTMTVQTQVSEADVSRLKLGMAAYFTTLGGHGKRWYGKLDKIEPTPT----VTNNVVLYN 251 Query: 307 VLFDVANPSRELMSGMSADVYFVLARAEHVPAIPRSLVTKPGMDGTQ------------- 353 LFDV N LM+ M+A V+F++A+A+ V IP + V++ G G + Sbjct: 252 ALFDVPNDDNLLMTQMTAQVFFIVAQAKDVLQIPLAAVSQ-GARGPRAGAQPAAGGAPAG 310 Query: 354 ----------TVKVVLADGTLETRKIKIGIRDGERAQVLSGLKEGEQV---LLPANPPAP 400 TVKV+ AD TLE R+++IG+ + +AQVL GL+EGE+V LL A PA Sbjct: 311 AARGNGPRRATVKVLRADNTLEEREVQIGVSNRVQAQVLDGLQEGERVVTGLLSAPAPAA 370 Query: 401 AGDGN 405 + N Sbjct: 371 STTSN 375 >ref|YP_158026.1| hypothetical protein ebA1846 [Aromatoleum aromaticum EbN1] emb|CAI07125.1| similar to periplsmic HlyD type membrane fusion proteins [Aromatoleum aromaticum EbN1] Length = 447 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 152/370 (41%), Positives = 220/370 (59%), Gaps = 40/370 (10%) Query: 68 AVERADLEQVVNATGNVVAQDYVDVGSKVAGQISDVEVVIGEAVKAGRLLATVAPAVQNS 127 +V R D+E VV ATG + +DYVDVG++V+GQ+ + + +G VKAG LLA + P V S Sbjct: 76 SVSRGDIEDVVTATGMLQPRDYVDVGAQVSGQLKKIHIEVGSEVKAGELLAEIDPIVLQS 135 Query: 128 RIESNRATLARLKAELAGQNAQLDFAQLQFQRQTQLKAENATREESYESSRMNMYAAASR 187 R+++ RA L L+A+L + + A LQ +RQ L AE+AT ++ +++ A ++ Sbjct: 136 RVDATRAQLRNLRAQLMQRESDRRLADLQLRRQRNLMAEDATTADALQTAEATQLGAQAQ 195 Query: 188 VDATNAQIQQTEAAIREDEAVQKQTRIEAPVSGTIVTLNARPGQMVSANQE--VLMRIAD 245 V+A AQI QTE+ +R DEA RI AP++GT+V++ AR GQ + A+Q+ V++R+AD Sbjct: 196 VEALKAQIDQTESNLRADEANLNYARIYAPITGTVVSITARQGQTLIASQQAPVILRVAD 255 Query: 246 LSRMTVQVPVSEEDVTRLQKGMTAYFTTPGYPGKRWSGKLRQIMLLPTDDSGRQGKKAYY 305 LS MTVQ VSE DV+RL GM AYFTT G G+RW G LR+I P Q Y Sbjct: 256 LSTMTVQTQVSEADVSRLTLGMDAYFTTLGGEGRRWQGTLRKIEPTPV----VQNNVVLY 311 Query: 306 TVLFDVANPSRELMSGMSADVYFVLARAEHVPAIPRSLVT-------------------- 345 LFDV+NP + LM+ M+A V+FV+A A +P S Sbjct: 312 NALFDVSNPEQALMTQMTAQVFFVVAAAHDALLVPMSAFAATPRATRTAAGGSATGGGEV 371 Query: 346 -----KPGMDGT-----QTVKVVLADGTLETRKIKIGIRDGERAQVLSGLKEGEQVL--- 392 +P GT +TV+V ADGTL+ R++++G+ + +AQVLSGL+EGE+V+ Sbjct: 372 RPARPRPPTSGTAGPRHRTVRVAAADGTLQERRVEVGVSNRVQAQVLSGLEEGERVVSGA 431 Query: 393 -LPANPPAPA 401 L ++ PA A Sbjct: 432 ALRSDAPAAA 441 >ref|YP_003279785.1| macrolide-specific efflux protein macA [Comamonas testosteroni CNB-2] gb|ACY34489.1| macrolide-specific efflux protein macA [Comamonas testosteroni CNB-2] Length = 393 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 149/379 (39%), Positives = 220/379 (58%), Gaps = 24/379 (6%) Query: 31 WSVVALVLVLGGGYALYARQSPPPAPPKPIPVKLATVAVERADLEQVVNATGNVVAQDYV 90 W + L+LV GG AL+ P V+ +VAV+R D+E V A G + + YV Sbjct: 9 WGSLGLLLVCAGGIALWWGSRPR--------VEYQSVAVQRGDVESTVTAIGTLQPRTYV 60 Query: 91 DVGSKVAGQISDVEVVIGEAVKAGRLLATVAPAVQNSRIESNRATLARLKAELAGQNAQL 150 DVG++V+GQI+ + V G V+ G LL + P+VQ + +++ RA+LA L A++A Q AQL Sbjct: 61 DVGAQVSGQITRLLVSPGARVEKGALLVEIDPSVQRATVDAGRASLASLGAQIAEQQAQL 120 Query: 151 DFAQLQFQRQTQLKAENATREESYESSRMNMYAAASRVDATNAQIQQTEAAIREDEAVQK 210 A Q +RQ QL AE ATR+E + + + AA+R+D AQ+QQT+A+++ DEA Sbjct: 121 KLAGQQLKRQQQLAAEEATRQEDVQIAEAQVAGAAARIDHLKAQMQQTQASLKADEARLG 180 Query: 211 QTRIEAPVSGTIVTLNARPGQMVSANQEV--LMRIADLSRMTVQVPVSEEDVTRLQKGMT 268 TRI AP+SGT+V+++AR GQ ++A + ++RIADL+ MTV VSE DV R++ M Sbjct: 181 YTRIYAPMSGTVVSVDAREGQTLNATYQTPNILRIADLTAMTVWTDVSEADVRRVRADMP 240 Query: 269 AYFTTPGYPG----KRWSGKLRQIMLLPTDDSGRQGKKAY----------YTVLFDVANP 314 YFTT G G +RW+ ++RQ++ P A YT LFDV N Sbjct: 241 VYFTTLGSAGQEQARRWNSRVRQVLPAPPASVAPAAGNAATPAAATKAVTYTALFDVDNK 300 Query: 315 SRELMSGMSADVYFVLARAEHVPAIPRSLVTKPGMDGTQTVKVVLADGTLETRKIKIGIR 374 EL+ M+A V FV AE +P + + +Q+V+V+ A E R +K+G+R Sbjct: 301 DAELLPQMTAQVVFVTGSAEQALTVPLTALQSDKDQQSQSVRVLTAKRQPEQRNVKLGVR 360 Query: 375 DGERAQVLSGLKEGEQVLL 393 + QVL G+ EGEQV++ Sbjct: 361 SRHQVQVLDGVAEGEQVIV 379