BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4319.p (497 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776834.1| outer membrane efflux protein [Herbaspirillu... 725 0.0 ref|YP_004752089.1| outer membrane efflux protein [Collimonas fu... 531 e-148 ref|YP_486516.1| RND efflux system, outer membrane lipoprotein, ... 337 4e-90 ref|YP_004109215.1| RND efflux system outer membrane lipoprotein... 335 1e-89 ref|YP_532426.1| RND efflux system outer membrane lipoprotein No... 332 7e-89 >ref|YP_003776834.1| outer membrane efflux protein [Herbaspirillum seropedicae SmR1] gb|ADJ64926.1| outer membrane efflux protein [Herbaspirillum seropedicae SmR1] Length = 492 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 430/474 (90%), Positives = 449/474 (94%) Query: 19 PRMTRVAMAAALVLTIGGCVTREVQPDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWK 78 P TRVA+AAALVL +GGC REVQ DPILEMQVPDKWGGGASADVAHAEQLWPDTDWWK Sbjct: 17 PAFTRVALAAALVLAVGGCAMREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWK 76 Query: 79 QFGSGELSSLVQEGQRNNYEIAAAFSRIKQAEAQARIAGAPLLPNVSLNAGANREMPISG 138 QFGS ELS LV++GQRNNYEIAAA+SR+KQAEAQARIAGAPLLP+ +NAGA RE+PISG Sbjct: 77 QFGSNELSELVEQGQRNNYEIAAAYSRVKQAEAQARIAGAPLLPSAGINAGAAREIPISG 136 Query: 139 GTPTNSANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVSTYLQVL 198 GTPTN+ANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVSTYLQVL Sbjct: 137 GTPTNTANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVSTYLQVL 196 Query: 199 SLRDRLEIARQNVNNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDLQQQEQD 258 SLRDRL IARQNV NAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDLQQQEQD Sbjct: 197 SLRDRLAIARQNVQNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDLQQQEQD 256 Query: 259 AQTALAILLGRPPQNFKVEEKGLAKIQMPRISAGLPSELLTRRPDIRRAEANLAAANANV 318 AQTALAILLGRPPQNFKVEEKGLA+IQMPRISAGLPSELLTRRPDIRRAEA+LAAANANV Sbjct: 257 AQTALAILLGRPPQNFKVEEKGLARIQMPRISAGLPSELLTRRPDIRRAEASLAAANANV 316 Query: 319 AVARASLFPSISLTGSTGAQSNALLSLFNGPNLFANLGTSLIAPIFDGGNLRNQQALAEA 378 AVARA+LFPSI+LTGSTGAQS+ALLSLF+GPNLFANLG LIAPIFDGG LR Q+ LA A Sbjct: 317 AVARAALFPSITLTGSTGAQSSALLSLFDGPNLFANLGAGLIAPIFDGGKLRGQRDLAIA 376 Query: 379 QKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVNEVDQARFAFELAEIRYRAGAE 438 QKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKV EVDQARFAFELAEIRYRAGAE Sbjct: 377 QKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEIRYRAGAE 436 Query: 439 DLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQDKQVPAEPGAAS 492 DLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQD Q P + G +S Sbjct: 437 DLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQDSQAPGDSGTSS 490 >ref|YP_004752089.1| outer membrane efflux protein [Collimonas fungivorans Ter331] gb|AEK61266.1| outer membrane efflux protein [Collimonas fungivorans Ter331] Length = 480 Score = 531 bits (1368), Expect = e-148, Method: Composition-based stats. Identities = 321/482 (66%), Positives = 384/482 (79%), Gaps = 11/482 (2%) Query: 15 SSPWPRMTRVAMAAALVLTIGGCVTREVQPDPILEMQVPDKWGGGASADVAHAEQLWPDT 74 S W M A A+AL+L+ C ++ +P +++P W A+ EQ WPD+ Sbjct: 6 SRRWSSMA--ACASALLLS--ACASQIDIREPTPSVEIPQSWDLSANT----GEQDWPDS 57 Query: 75 DWWKQFGSGELSSLVQEGQRNNYEIAAAFSRIKQAEAQARIAGAPLLPNVSLNAGANREM 134 WWK+FGS ELS LV +GQ +N EIAAA SR++QAEAQARIAGAPLLPN + NR + Sbjct: 58 GWWKRFGSDELSQLVAQGQASNLEIAAAISRVRQAEAQARIAGAPLLPNADFSTNVNRAV 117 Query: 135 PI-SGGTPTNSANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVST 193 P+ S G+ S + +++ YE+DFWGKNRAG+ AAEA+L+ANRYDRETVALTVTSGIVST Sbjct: 118 PLASSGSAVTSTSGLVEIGYEVDFWGKNRAGLAAAEASLQANRYDRETVALTVTSGIVST 177 Query: 194 YLQVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDLQ 253 YLQVLSLRDR+EIA+QNV+NAERVL+LV AQSRAGSASPLDLARQRSA+A Q+ +IPDL+ Sbjct: 178 YLQVLSLRDRIEIAQQNVDNAERVLKLVAAQSRAGSASPLDLARQRSAVAGQKAVIPDLK 237 Query: 254 QQEQDAQTALAILLGRPPQNFKVEEKGLAKIQMPRISAGLPSELLTRRPDIRRAEANLAA 313 QQE++AQTALAILLGRPPQ F V E GLAKI +P+++ GLPSELL+RRPDIR AEA LAA Sbjct: 238 QQEREAQTALAILLGRPPQTFTVNEAGLAKILLPQVTPGLPSELLSRRPDIRHAEAELAA 297 Query: 314 ANANVAVARASLFPSISLTGSTGAQSNALLSLFNGPNLFANLGTSLIAPIFDGGNLRNQQ 373 ANANVA ARA+LFPSI LTGS G QSNALLSLFNGPN+ AN G L+APIFD G L +Q+ Sbjct: 298 ANANVANARAALFPSIRLTGSAGGQSNALLSLFNGPNMLANFGAGLVAPIFDAGRLNSQR 357 Query: 374 ALAEAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVNEVDQARFAFELAEIRY 433 LA AQK+ELVQ+YR VI +LSEV+ ALG IRSL+E+ +LKV E++QARFAFEL+EIRY Sbjct: 358 DLAIAQKQELVQIYRSTVIAALSEVDTALGQIRSLDEQRKLKVTEMEQARFAFELSEIRY 417 Query: 434 RAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQDKQVPAEPGAAST 493 R GAEDL+ VLDTQR+LSE QN+LGQIKL+RL+ATVSLYKALGGGWQD V P AA Sbjct: 418 RVGAEDLMTVLDTQRSLSEVQNELGQIKLKRLKATVSLYKALGGGWQD--VHGSPAAAEP 475 Query: 494 DT 495 T Sbjct: 476 VT 477 >ref|YP_486516.1| RND efflux system, outer membrane lipoprotein, NodT [Rhodopseudomonas palustris HaA2] gb|ABD07605.1| RND efflux system, outer membrane lipoprotein, NodT [Rhodopseudomonas palustris HaA2] Length = 482 Score = 337 bits (863), Expect = 4e-90, Method: Composition-based stats. Identities = 214/472 (45%), Positives = 295/472 (62%), Gaps = 16/472 (3%) Query: 20 RMTRVAMAAALVLTIGGCVTREVQPDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQ 79 R R+ A+A VL GGC+ + PDP L++ P ++ AS + A P DWW+ Sbjct: 10 RSVRMVAASAFVLGAGGCILTKDLPDPALDL--PPRYKS-ASLNTVDAP---PALDWWRG 63 Query: 80 FGSGELSSLVQEGQRNNYEIAAAFSRIKQAEAQARIAGAPLLPNVSLNAGANREMPISGG 139 F S EL+ L++E Q N +IAAA +RI QA+AQARI GA LLP+++ N G+ + SG Sbjct: 64 FRSAELTQLMEEAQTVNLDIAAATARILQADAQARITGAALLPSITGN-GSGSQNKTSGS 122 Query: 140 TPTNSA---------NASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGI 190 +N+ +ASL SYEIDFWGKN AAE T A R+DR+ VALT + + Sbjct: 123 NVSNTTIAGRRYATYSASLSASYEIDFWGKNHDAALAAEETATATRFDRDVVALTTMASV 182 Query: 191 VSTYLQVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIP 250 + Y QVL+ +DRL +R+N+ +A+R+L ++ + AG+ S LD+A+Q S LANQR +P Sbjct: 183 ANAYFQVLATQDRLRTSRENIASAQRILDAIKQRLAAGTGSDLDVAQQESVLANQRAAVP 242 Query: 251 DLQQQEQDAQTALAILLGRPPQNFKVEEKGLAKIQMPRISAGLPSELLTRRPDIRRAEAN 310 LQ LA L+ RPP++ K+ L +I PR++ GLPSELLT+RPDIRR EA Sbjct: 243 PLQLTLAQNINTLATLVSRPPESVKIVGGSLNRISSPRVTPGLPSELLTQRPDIRRQEAQ 302 Query: 311 LAAANANVAVARASLFPSISLTGSTGAQSNALLSLFNGPNLFANLGTSLIAPIFDGGNLR 370 LA+A ANV ARA FPSI LTG G QS L SLF F++L L PIFDGG ++ Sbjct: 303 LASATANVGSARAQFFPSIQLTGQGGYQSAVLASLFTPQATFSSLAAGLTQPIFDGGRIQ 362 Query: 371 NQQALAEAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVNEVDQARFAFELAE 430 L AQ+EEL+Q YR+ V+++ ++V+ AL +I+ ER RL+ V +R AF LAE Sbjct: 363 GNFDLTRAQQEELLQTYRKTVVSAFADVDNALESIKQNTERLRLQRQVVASSRRAFNLAE 422 Query: 431 IRYRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQDK 482 + RAG D++ VL+TQ TL A++ L Q +L R A VSL++ALGGGW+ + Sbjct: 423 QQLRAGTADIVTVLNTQLTLFTAEDALIQTQLARYLAIVSLFQALGGGWEPR 474 >ref|YP_004109215.1| RND efflux system outer membrane lipoprotein [Rhodopseudomonas palustris DX-1] gb|ADU44482.1| RND efflux system, outer membrane lipoprotein, NodT family [Rhodopseudomonas palustris DX-1] Length = 482 Score = 335 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 208/472 (44%), Positives = 297/472 (62%), Gaps = 16/472 (3%) Query: 20 RMTRVAMAAALVLTIGGCVTREVQPDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQ 79 R TR +A+ALV GGC+ + PDP L++ P+++ + V P DWW+ Sbjct: 10 RATRFVVASALVAASGGCILTQDLPDPALDL--PNRYKAASRTAVEKP----PALDWWRG 63 Query: 80 FGSGELSSLVQEGQRNNYEIAAAFSRIKQAEAQARIAGAPLLPNVSLNAGANREMPISGG 139 F S EL+ L++E Q N ++AAA +RI+QA+AQARI GA LLP++S G ++ SG Sbjct: 64 FRSAELTQLMEEAQTVNLDVAAAVARIRQADAQARITGAALLPSLS-GTGNGSQVKTSGS 122 Query: 140 TPTNSANASLQVSY---------EIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGI 190 +N+ A + S EIDFWGKNR AAE T A R+DR+TV LT +G+ Sbjct: 123 NISNTTIAGRRYSTYSSSLSASYEIDFWGKNRDAALAAEETATATRFDRDTVMLTTMAGV 182 Query: 191 VSTYLQVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIP 250 + Y QVL+ +DR+ A N+ +A R+L ++ + RAG+ + LD+A+Q S LANQR +P Sbjct: 183 ANAYFQVLAAQDRIRTAESNIKSASRILDAIKQRLRAGTGTDLDVAQQESVLANQRAALP 242 Query: 251 DLQQQEQDAQTALAILLGRPPQNFKVEEKGLAKIQMPRISAGLPSELLTRRPDIRRAEAN 310 L+ ALA L+ RPP++ ++ L ++ PR++ GLPS+LLT+RPDIRR EA Sbjct: 243 PLRLTLAQNVNALATLVARPPESVRIAGGSLTRLASPRVTPGLPSDLLTQRPDIRRQEAQ 302 Query: 311 LAAANANVAVARASLFPSISLTGSTGAQSNALLSLFNGPNLFANLGTSLIAPIFDGGNLR 370 LA+A ANV ARA FP+I LT G QS AL SLF F+N+ L PIFDGG ++ Sbjct: 303 LASATANVGSARAQFFPTIQLTAQGGYQSAALASLFTPQATFSNIAAGLTQPIFDGGRIQ 362 Query: 371 NQQALAEAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVNEVDQARFAFELAE 430 L +AQ+EEL+Q YR+ V+++ ++V+ AL +I+ ER RL+ V +R AF+LAE Sbjct: 363 GNFDLTQAQQEELLQTYRKTVVSAFADVDNALESIKQNTERLRLQREVVASSRRAFDLAE 422 Query: 431 IRYRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQDK 482 + RAG D++ VL+TQ TL +A++ L Q +L R QA VSL++ALGGGW+ K Sbjct: 423 QQLRAGTSDIVTVLNTQLTLFQAEDGLIQTQLARFQAIVSLFQALGGGWEPK 474 >ref|YP_532426.1| RND efflux system outer membrane lipoprotein NodT [Rhodopseudomonas palustris BisB18] gb|ABD88107.1| RND efflux system, outer membrane lipoprotein, NodT [Rhodopseudomonas palustris BisB18] Length = 484 Score = 332 bits (852), Expect = 7e-89, Method: Composition-based stats. Identities = 205/459 (44%), Positives = 282/459 (61%), Gaps = 16/459 (3%) Query: 34 IGGCVTREVQPDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQFGSGELSSLVQEGQ 93 +GGC+ + PDP LE+ G A A + P DWW+ F S EL+ L++E Q Sbjct: 24 VGGCILTQDLPDPALEIPT------GYKAARATTVEAVPALDWWRGFRSTELTQLMEEAQ 77 Query: 94 RNNYEIAAAFSRIKQAEAQARIAGAPLLPNVSLNAGANREMPIS----------GGTPTN 143 N +IAAA +RI QA+AQARI G LLP+++ A R + GG Sbjct: 78 TVNLDIAAATARIIQADAQARITGTALLPSLTAGGSATRSKSSTASSSGTGVGLGGREIT 137 Query: 144 SANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVSTYLQVLSLRDR 203 + ++SL SYEIDFW KNR AAE ANR+DR+ VALT +G+ + Y QVL+ +DR Sbjct: 138 TYSSSLSASYEIDFWSKNRDATLAAEEIANANRFDRDVVALTTAAGVANAYFQVLASQDR 197 Query: 204 LEIARQNVNNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDLQQQEQDAQTAL 263 + A +N+ +A+R+L ++ + G+ S LD+A+Q S LANQR +P L+ AL Sbjct: 198 IRTAERNIASAQRILDAIKLRLSVGTGSDLDVAQQESVLANQRAAVPPLRLTLAQNVNAL 257 Query: 264 AILLGRPPQNFKVEEKGLAKIQMPRISAGLPSELLTRRPDIRRAEANLAAANANVAVARA 323 A L+ RPP+ +V L +I PR++ GLPSELLT+RPDIRR EA LA+A ANV ARA Sbjct: 258 ATLVARPPEAVRVGGGSLDRIAAPRVTPGLPSELLTQRPDIRRQEAQLASATANVGSARA 317 Query: 324 SLFPSISLTGSTGAQSNALLSLFNGPNLFANLGTSLIAPIFDGGNLRNQQALAEAQKEEL 383 FPSI LTG G QS AL SLF F N+ L PIFDGG + +A+++EL Sbjct: 318 QFFPSIQLTGQGGYQSAALASLFTPHAAFYNVAAGLTQPIFDGGRILANFEYNQARQDEL 377 Query: 384 VQVYRQRVITSLSEVEKALGAIRSLEERYRLKVNEVDQARFAFELAEIRYRAGAEDLLVV 443 +Q YR+ V+++ ++V+ AL +IR ER RL+ ++ +R AF LAE + RAG D++ V Sbjct: 378 LQTYRKTVVSAFADVDNALESIRQNTERLRLQRVVLESSRRAFNLAEQQLRAGTADIVTV 437 Query: 444 LDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQDK 482 L+TQ TL +A++ L Q +L RL A VSLY+ALGGGWQ + Sbjct: 438 LNTQLTLFQAEDALSQAQLARLLAIVSLYQALGGGWQPR 476