BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4314.p (367 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_999418.1| 3-hydroxyacyl-CoA dehydrogenase [Verminephrobac... 409 e-112 ref|ZP_02886075.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [... 355 6e-96 ref|YP_001748573.1| 3-hydroxyacyl-CoA dehydrogenase [Pseudomonas... 333 4e-89 ref|YP_004415547.1| 3-hydroxybutyryl-CoA dehydrogenase [Pusillim... 315 5e-84 ref|YP_003980885.1| 3-hydroxyacyl-CoA dehydrogenase, C-terminal ... 313 3e-83 >ref|YP_999418.1| 3-hydroxyacyl-CoA dehydrogenase [Verminephrobacter eiseniae EF01-2] gb|ABM60400.1| 3-hydroxyacyl-CoA dehydrogenase, NAD-binding [Verminephrobacter eiseniae EF01-2] Length = 313 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 211/310 (68%), Positives = 244/310 (78%) Query: 58 MSEKIAVIGAGLIGRAWAIVFARAGFEVALWDAVPPALQGCQQLLRENLADLAAHGLIAE 117 M ++IA++GAGLIGRAWAIVFARAG +V L DA P AL CQ+LL EN+ DLA HGLI E Sbjct: 1 MQDRIAIVGAGLIGRAWAIVFARAGCQVRLHDADPHALADCQRLLLENIGDLAGHGLITE 60 Query: 118 PPQALLDRIHRAASLEQALQDAILAQENVKETVEVKREIFAEMDRLAAPDTILTSSTSWI 177 P A+L RI A+L + L+DA L QENV+ET+E KR IFAEMD L+APD IL SSTSW+ Sbjct: 61 APAAVLARIKPTANLAETLEDAALVQENVRETLEAKRAIFAEMDALSAPDAILASSTSWL 120 Query: 178 PTSAFSEHLPGRARILVAHPVNPPYLVPLVELAPAPWTAPDTVTRAKQIYARAGQSPVVL 237 S FSE LPGR R++V HPVNPPYL+PLVE+APAPWT+ V RA +Y +AGQSPV+L Sbjct: 121 MASEFSEGLPGRHRVMVGHPVNPPYLIPLVEVAPAPWTSDAAVQRAHALYRQAGQSPVLL 180 Query: 238 NKEITGFLLNRIQGAVLNEALNLYENGYASAEDIDKVFKHGLGLRWSFMGPFETIDLNAP 297 KEITGFLLNRIQGAVLNEALNLY GYAS +D+DKV K GLGLRWSFMGPFETIDLNAP Sbjct: 181 RKEITGFLLNRIQGAVLNEALNLYAGGYASVQDLDKVLKDGLGLRWSFMGPFETIDLNAP 240 Query: 298 AGVLDYARRYGHTYGEVARSQLPNAWQAATLDQLAQERRAVLPVEQLAERARWRDNRLMG 357 AG+LDYARRYG TY +VAR Q PN W A + ++ ERR LP +LA RARWRDNRLM Sbjct: 241 AGLLDYARRYGPTYRDVARGQQPNDWDDALVARIDAERREALPATELAARARWRDNRLMA 300 Query: 358 LITHQRQQPK 367 L+ HQR Q + Sbjct: 301 LVAHQRTQAR 310 >ref|ZP_02886075.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Burkholderia graminis C4D1M] gb|EDT08463.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Burkholderia graminis C4D1M] Length = 313 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 182/307 (59%), Positives = 230/307 (74%) Query: 57 VMSEKIAVIGAGLIGRAWAIVFARAGFEVALWDAVPPALQGCQQLLRENLADLAAHGLIA 116 + ++ AVIG+G IGRAWAIVFAR+GF+V L DA L+ +RE++ DLA+ LI Sbjct: 1 MQTKTTAVIGSGRIGRAWAIVFARSGFDVKLHDASQDMLRDAVPAIRESVQDLASFDLID 60 Query: 117 EPPQALLDRIHRAASLEQALQDAILAQENVKETVEVKREIFAEMDRLAAPDTILTSSTSW 176 EP AL+ RI +L +A+ +A L QEN+ E V+VKR +FA++DRL PD +L SSTS Sbjct: 61 EPVDALVARITTCETLAEAVAEADLVQENIAEIVDVKRTLFAQLDRLTKPDALLASSTSG 120 Query: 177 IPTSAFSEHLPGRARILVAHPVNPPYLVPLVELAPAPWTAPDTVTRAKQIYARAGQSPVV 236 +P S F+E L GRAR LVAHPVNPP LVPLVEL APWT+ DT+ RA+ Y +AGQ PV Sbjct: 121 LPASTFTEALEGRARCLVAHPVNPPSLVPLVELCGAPWTSQDTLERARVFYEQAGQKPVT 180 Query: 237 LNKEITGFLLNRIQGAVLNEALNLYENGYASAEDIDKVFKHGLGLRWSFMGPFETIDLNA 296 +N+EI+GFLLNR+QGAVL+EAL+LYE GYASA D+D V + GL +RWSFMGPFETIDLNA Sbjct: 181 VNREISGFLLNRLQGAVLDEALSLYEQGYASAADLDTVMRDGLAMRWSFMGPFETIDLNA 240 Query: 297 PAGVLDYARRYGHTYGEVARSQLPNAWQAATLDQLAQERRAVLPVEQLAERARWRDNRLM 356 P GV DYA+RYG TY +A +++P W AATLD+L ERRA LP ++ ER+RWRD RLM Sbjct: 241 PGGVADYAQRYGGTYRSIAETRVPFDWAAATLDRLDAERRAALPRGRIEERSRWRDRRLM 300 Query: 357 GLITHQR 363 L+ H+R Sbjct: 301 ALLAHRR 307 >ref|YP_001748573.1| 3-hydroxyacyl-CoA dehydrogenase [Pseudomonas putida W619] gb|ACA72204.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Pseudomonas putida W619] Length = 320 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 173/305 (56%), Positives = 210/305 (68%) Query: 62 IAVIGAGLIGRAWAIVFARAGFEVALWDAVPPALQGCQQLLRENLADLAAHGLIAEPPQA 121 IA++GAGLIGRAWAIVFARAG V L D +Q + L +LA L+ + P Sbjct: 14 IAIVGAGLIGRAWAIVFARAGHPVRLHDMDLQTMQNSHAYIEARLNELAEFDLLNDAPLT 73 Query: 122 LLDRIHRAASLEQALQDAILAQENVKETVEVKREIFAEMDRLAAPDTILTSSTSWIPTSA 181 +L RI L AL+D +L QENV+ETVE K +IF+ MD LA D IL SSTSW+P S Sbjct: 74 VLARITCVPDLADALRDVVLVQENVRETVEAKIDIFSRMDALAPKDAILASSTSWLPASE 133 Query: 182 FSEHLPGRARILVAHPVNPPYLVPLVELAPAPWTAPDTVTRAKQIYARAGQSPVVLNKEI 241 F++ LPGR R +VAHP NPPYLVPLVEL PAPWT + + RA +IY AGQSPVVL++EI Sbjct: 134 FTKDLPGRGRCVVAHPTNPPYLVPLVELCPAPWTESEVMVRAHEIYTAAGQSPVVLSREI 193 Query: 242 TGFLLNRIQGAVLNEALNLYENGYASAEDIDKVFKHGLGLRWSFMGPFETIDLNAPAGVL 301 GFLLNR+Q AVLNE L+E G+AS+EDID+V K GL LRWSFMGPFETIDLNAPAGV Sbjct: 194 HGFLLNRVQAAVLNECFKLHEEGFASSEDIDRVLKDGLALRWSFMGPFETIDLNAPAGVS 253 Query: 302 DYARRYGHTYGEVARSQLPNAWQAATLDQLAQERRAVLPVEQLAERARWRDNRLMGLITH 361 DYA+RYG E S+ W + + ++ ERR L +E +A R+ WRD RLM L H Sbjct: 254 DYAKRYGQQNRETINSENAFDWSESAVARVHDERRQKLELEGIALRSAWRDRRLMALAAH 313 Query: 362 QRQQP 366 +RQ P Sbjct: 314 KRQAP 318 >ref|YP_004415547.1| 3-hydroxybutyryl-CoA dehydrogenase [Pusillimonas sp. T7-7] gb|AEC18923.1| 3-hydroxybutyryl-CoA dehydrogenase [Pusillimonas sp. T7-7] Length = 309 Score = 315 bits (808), Expect = 5e-84, Method: Composition-based stats. Identities = 162/305 (53%), Positives = 210/305 (68%), Gaps = 2/305 (0%) Query: 61 KIAVIGAGLIGRAWAIVFARAGFEVALWDAVPPALQGCQQLLRENLADLAAHGLIAEPPQ 120 K+AVIGAGLIG+AWAIVFAR G +V LWD AL +L+ + + +L L+++ Sbjct: 2 KVAVIGAGLIGQAWAIVFARGGCQVRLWDGDSAALTRAFKLVEQQIKELENKQLLSDA-A 60 Query: 121 ALLDRIHRAASLEQALQDAILAQENVKETVEVKREIFAEMDRLAAPDTILTSSTSWIPTS 180 ++ RIH A+SLE+AL A QEN+ E ++VK++IF MDRL+ PDT L SSTS IP S Sbjct: 61 GVIARIHTASSLEEALDGAGYVQENLPERLDVKQDIFGAMDRLSPPDTPLASSTSSIPAS 120 Query: 181 AFSEHLPGRARILVAHPVNPPYLVPLVELAPAPWTAPDTVTRAKQIYARAGQSPVVLNKE 240 AF+E+L GR R LV+HPVNPPYL+P+VEL APWT T+ R + + + GQ PV L+KE Sbjct: 121 AFTENLSGRHRCLVSHPVNPPYLIPVVELCGAPWTDAATLERTRDLMKKVGQKPVTLHKE 180 Query: 241 ITGFLLNRIQGAVLNEALNLYENGYASAEDIDKVFKHGLGLRWSFMGPFETIDLNAPAGV 300 + GF+LNR+QGA+L EA L E+G SAED+D K GLGLRWSFMGPFETIDLNAP GV Sbjct: 181 LEGFVLNRLQGALLREAFRLVESGCVSAEDLDITVKDGLGLRWSFMGPFETIDLNAPDGV 240 Query: 301 LDYARRYGHTYGEVARSQLPNA-WQAATLDQLAQERRAVLPVEQLAERARWRDNRLMGLI 359 DY +RYG Y +A+ Q W + + Q+RR +LP +L R WRD RLM L+ Sbjct: 241 QDYCKRYGDMYESIAKEQTGTGPWSPELVANIDQQRRELLPSSELLNRRIWRDERLMALL 300 Query: 360 THQRQ 364 H++Q Sbjct: 301 LHKKQ 305 >ref|YP_003980885.1| 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain-containing protein 4 [Achromobacter xylosoxidans A8] gb|ADP18170.1| 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain protein 4 [Achromobacter xylosoxidans A8] Length = 318 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 162/302 (53%), Positives = 206/302 (68%), Gaps = 2/302 (0%) Query: 63 AVIGAGLIGRAWAIVFARAGFEVALWDAVPPALQGCQQLLRENLADLAAHGLIAEPPQAL 122 A++G GLIG+ WAIVFAR G+EV L+D L + L+ + L +L GL+ + +A+ Sbjct: 11 AIVGTGLIGQGWAIVFARMGWEVRLYDVNAAMLAEARGLILQQLRELETQGLLKDA-EAI 69 Query: 123 LDRIHRAASLEQALQDAILAQENVKETVEVKREIFAEMDRLAAPDTILTSSTSWIPTSAF 182 R+H A SL AL+ A QEN E VE+KR +F ++D A PD I+ SSTS IP S F Sbjct: 70 GGRVHVANSLADALKGARYIQENSPENVEIKRALFTQLDAAAEPDAIIGSSTSSIPASEF 129 Query: 183 SEHLPGRARILVAHPVNPPYLVPLVELAPAPWTAPDTVTRAKQIYARAGQSPVVLNKEIT 242 + HLPGR R LVAHPVNPPYL+P+VEL PAPWT+P+ V A+ I GQ PV++ +EI Sbjct: 130 TGHLPGRHRCLVAHPVNPPYLIPVVELCPAPWTSPEAVAAARAIMTGIGQKPVLVRREIE 189 Query: 243 GFLLNRIQGAVLNEALNLYENGYASAEDIDKVFKHGLGLRWSFMGPFETIDLNAPAGVLD 302 GF+LNR+QGA+L+EA L G ASAEDID K GLGLRWSFMGPFETIDLNAP G+ D Sbjct: 190 GFILNRLQGALLHEAFRLASAGIASAEDIDTTVKDGLGLRWSFMGPFETIDLNAPGGIAD 249 Query: 303 YARRYGHTYGEVARSQ-LPNAWQAATLDQLAQERRAVLPVEQLAERARWRDNRLMGLITH 361 Y RYG Y + +Q P AW A +D L+ ERR +LP E LA+R WRD +LM L+ H Sbjct: 250 YCARYGGLYQSIGGTQGEPVAWDGALVDALSDERRGLLPREDLAKRRFWRDEKLMRLMRH 309 Query: 362 QR 363 ++ Sbjct: 310 KQ 311