BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4313.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776830.1| short chain dehydrogenase [Herbaspirillum se... 466 e-129 ref|YP_999417.1| short-chain dehydrogenase/reductase SDR [Vermin... 366 2e-99 ref|YP_003976325.1| short chain dehydrogenase family protein 2 [... 290 3e-76 gb|EGP47067.1| short chain dehydrogenase family protein 2 [Achro... 282 4e-74 gb|EFV85910.1| short-chain dehydrogenase/reductase SDR [Achromob... 276 3e-72 >ref|YP_003776830.1| short chain dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ64922.1| short chain dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 261 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 238/261 (91%), Positives = 254/261 (97%) Query: 31 MELNLQDQKVIVTAGAQGIGLAITAAFVEAGAHVHICDVSEDFLASARARFGHAPVSYSR 90 M+LNL+DQKVIVTAGAQGIGLAITAAFVEAGAHVHICDVSEDFLASARARFGHAPVSYSR Sbjct: 1 MDLNLKDQKVIVTAGAQGIGLAITAAFVEAGAHVHICDVSEDFLASARARFGHAPVSYSR 60 Query: 91 TDVSSEREVDAMFADLASRWDGRLDVLVNNAGIAGPTLPVEDIAPADWDQTIAINLTGPF 150 TDVSSEREVDAMFADLA RW GRLDVL+NNAGIAGPT PVE++A +DWDQT+A+NLTGPF Sbjct: 61 TDVSSEREVDAMFADLAQRWSGRLDVLINNAGIAGPTSPVEEVALSDWDQTLAVNLTGPF 120 Query: 151 LCTRRAVPMLKQNGGGAIINISSVAGRLGFALRTPYSASKYGVIGMTETWAIELGPSNIR 210 LCTRRAVP+LK+NGGGAI+NISSVAGRLGFALRTPYSASKYGVIG+TETWAIELGPS+IR Sbjct: 121 LCTRRAVPLLKKNGGGAIVNISSVAGRLGFALRTPYSASKYGVIGLTETWAIELGPSHIR 180 Query: 211 VNAVLPGIVEGPRQERIVAAKAAAYGIEHEEMRARLLSKVSLRKMVTAEDVANQVIFICS 270 VNAVLPGIVEG RQERIVAAKAAAYGI HEEMR RLLS+VSLRKMVTAED+ANQVIF+CS Sbjct: 181 VNAVLPGIVEGARQERIVAAKAAAYGIGHEEMRQRLLSRVSLRKMVTAEDIANQVIFLCS 240 Query: 271 PAGASISGQSLSVCGNVEVLG 291 PAGASISGQSLSVCGNVEVLG Sbjct: 241 PAGASISGQSLSVCGNVEVLG 261 >ref|YP_999417.1| short-chain dehydrogenase/reductase SDR [Verminephrobacter eiseniae EF01-2] gb|ABM60399.1| short-chain dehydrogenase/reductase SDR [Verminephrobacter eiseniae EF01-2] Length = 258 Score = 366 bits (939), Expect = 2e-99, Method: Composition-based stats. Identities = 192/261 (73%), Positives = 223/261 (85%), Gaps = 3/261 (1%) Query: 31 MELNLQDQKVIVTAGAQGIGLAITAAFVEAGAHVHICDVSEDFLASARARFGHAPVSYSR 90 M++ L ++V+VTAGAQGIGLAIT AFV AGA VHICDV E FLA A + + +SR Sbjct: 1 MDIGLNGKRVLVTAGAQGIGLAITEAFVAAGAQVHICDVDEGFLAQATRQLPQ--LCHSR 58 Query: 91 TDVSSEREVDAMFADLASRWDGRLDVLVNNAGIAGPTLPVEDIAPADWDQTIAINLTGPF 150 TDVS +VDAMFA +A RW GRLDVLVNNAGIAGPT VED A ADW+QTIA+NLTGPF Sbjct: 59 TDVSDAAQVDAMFAGIAERW-GRLDVLVNNAGIAGPTSAVEDTALADWEQTIAVNLTGPF 117 Query: 151 LCTRRAVPMLKQNGGGAIINISSVAGRLGFALRTPYSASKYGVIGMTETWAIELGPSNIR 210 LCTRRAVP+LK GGG+I+N+SS AGRLGF LRTPYSASK+GVIG+TE+WA+ELGPS IR Sbjct: 118 LCTRRAVPLLKAAGGGSIVNLSSAAGRLGFPLRTPYSASKFGVIGLTESWAMELGPSRIR 177 Query: 211 VNAVLPGIVEGPRQERIVAAKAAAYGIEHEEMRARLLSKVSLRKMVTAEDVANQVIFICS 270 VNA+LPGIV G RQER++AA+AA+YGI+HE MR RLLSKVSLR MVTA+D+ANQ++FICS Sbjct: 178 VNAILPGIVAGARQERVIAARAASYGIDHEAMRERLLSKVSLRSMVTAQDIANQIVFICS 237 Query: 271 PAGASISGQSLSVCGNVEVLG 291 PAGA+ISGQSLSVCGNVE LG Sbjct: 238 PAGATISGQSLSVCGNVEHLG 258 >ref|YP_003976325.1| short chain dehydrogenase family protein 2 [Achromobacter xylosoxidans A8] gb|ADP13610.1| short chain dehydrogenase family protein 2 [Achromobacter xylosoxidans A8] Length = 258 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 158/261 (60%), Positives = 203/261 (77%), Gaps = 3/261 (1%) Query: 31 MELNLQDQKVIVTAGAQGIGLAITAAFVEAGAHVHICDVSEDFLASARARFGHAPVSYSR 90 M +LQ ++V++TAGAQGIGLAI F+EAGA VH+CDV E +A A H + S Sbjct: 1 MSNSLQGKRVLITAGAQGIGLAIARRFLEAGAEVHVCDVDEAACKAAAAE--HPRLGVSV 58 Query: 91 TDVSSEREVDAMFADLASRWDGRLDVLVNNAGIAGPTLPVEDIAPADWDQTIAINLTGPF 150 TDVSSE +V AMF +L +W G+LD LVNNAG++GPT +E+ W +T+ +NLTG F Sbjct: 59 TDVSSEAQVQAMFGELTEKW-GKLDALVNNAGVSGPTNRLEETTLDAWQRTLDVNLTGTF 117 Query: 151 LCTRRAVPMLKQNGGGAIINISSVAGRLGFALRTPYSASKYGVIGMTETWAIELGPSNIR 210 LC R AVP+L+ GGGAI+NISSVAGRLGF+LRTPYSASK+G+ G+T+TWA+ELGPSNIR Sbjct: 118 LCARSAVPLLRAAGGGAIVNISSVAGRLGFSLRTPYSASKFGLAGLTQTWAMELGPSNIR 177 Query: 211 VNAVLPGIVEGPRQERIVAAKAAAYGIEHEEMRARLLSKVSLRKMVTAEDVANQVIFICS 270 VN+VLPG+V G R ERI+AA+AAA G+ ++ MR +L+ KVSLR+M + +D+ANQV ++CS Sbjct: 178 VNSVLPGVVSGDRVERIIAARAAASGVSNDAMREQLVDKVSLRRMTSPQDIANQVAYLCS 237 Query: 271 PAGASISGQSLSVCGNVEVLG 291 GA ISGQS+SVCGNVE LG Sbjct: 238 DEGAIISGQSISVCGNVEYLG 258 >gb|EGP47067.1| short chain dehydrogenase family protein 2 [Achromobacter xylosoxidans AXX-A] Length = 258 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 162/258 (62%), Positives = 202/258 (78%), Gaps = 3/258 (1%) Query: 34 NLQDQKVIVTAGAQGIGLAITAAFVEAGAHVHICDVSEDFLASARARFGHAPVSYSRTDV 93 +L+ ++V++TAGA GIGLAI F+ +GA VHICDV+ A A H +S S TDV Sbjct: 4 SLKGKRVLITAGAGGIGLAIARKFLASGAQVHICDVAA--EAVQAAVQAHPGLSGSVTDV 61 Query: 94 SSEREVDAMFADLASRWDGRLDVLVNNAGIAGPTLPVEDIAPADWDQTIAINLTGPFLCT 153 S E +V AMFADLA+RW GRLD LVNNAG++GPT +ED A W T+ +NLTG FLC Sbjct: 62 SDEAQVLAMFADLATRW-GRLDALVNNAGVSGPTSRLEDTDLAAWRATLDVNLTGTFLCA 120 Query: 154 RRAVPMLKQNGGGAIINISSVAGRLGFALRTPYSASKYGVIGMTETWAIELGPSNIRVNA 213 R AVP+L++ GGGAIINISSVAGRLGF+LR+PYSASK+G+ G+T+TWA+ELGPS IRVN+ Sbjct: 121 RSAVPLLREAGGGAIINISSVAGRLGFSLRSPYSASKFGLAGLTQTWAMELGPSGIRVNS 180 Query: 214 VLPGIVEGPRQERIVAAKAAAYGIEHEEMRARLLSKVSLRKMVTAEDVANQVIFICSPAG 273 VLPG+V G R ERI+AA+AAA G+ ++ MRA+L+ KVSLRKM ED+ANQV F+CS G Sbjct: 181 VLPGVVAGDRVERIIAARAAAGGVSNDAMRAQLVEKVSLRKMTQPEDIANQVAFLCSDEG 240 Query: 274 ASISGQSLSVCGNVEVLG 291 A +SGQS+SVCGNVE LG Sbjct: 241 AMVSGQSISVCGNVEYLG 258 >gb|EFV85910.1| short-chain dehydrogenase/reductase SDR [Achromobacter xylosoxidans C54] Length = 258 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 162/258 (62%), Positives = 202/258 (78%), Gaps = 3/258 (1%) Query: 34 NLQDQKVIVTAGAQGIGLAITAAFVEAGAHVHICDVSEDFLASARARFGHAPVSYSRTDV 93 +L+ ++V++TAGA GIGLAI F+ AGA VHICDV+ A A HA +S S TDV Sbjct: 4 SLKGKRVLITAGAGGIGLAIARKFLAAGARVHICDVAA--EAVQAAVQAHAGLSGSVTDV 61 Query: 94 SSEREVDAMFADLASRWDGRLDVLVNNAGIAGPTLPVEDIAPADWDQTIAINLTGPFLCT 153 + E +V AMFA+LA RW G+LD LVNNAG++GPT +ED A W T+ +NLTG FLC Sbjct: 62 ADEAQVLAMFAELAERW-GKLDALVNNAGVSGPTSRLEDTDLAAWQATLDVNLTGTFLCA 120 Query: 154 RRAVPMLKQNGGGAIINISSVAGRLGFALRTPYSASKYGVIGMTETWAIELGPSNIRVNA 213 R AVP+L++ GGGAIINISSVAGRLGF+LR+PYSASK+G+ G+T+TWA+ELGPS IRVN+ Sbjct: 121 RSAVPLLREAGGGAIINISSVAGRLGFSLRSPYSASKFGLAGLTQTWAMELGPSGIRVNS 180 Query: 214 VLPGIVEGPRQERIVAAKAAAYGIEHEEMRARLLSKVSLRKMVTAEDVANQVIFICSPAG 273 VLPG+V G R ERI+AA+AAA G+ ++ MRA+L+ KVSLRKM ED+ANQV F+CS G Sbjct: 181 VLPGVVAGDRVERIIAARAAAGGVSNDAMRAQLVEKVSLRKMTQPEDIANQVAFLCSDEG 240 Query: 274 ASISGQSLSVCGNVEVLG 291 A ISGQS+SVCGNVE LG Sbjct: 241 AMISGQSISVCGNVEYLG 258