BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4312.p (234 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776829.1| transcription regulator protein [Herbaspiril... 410 e-113 ref|YP_999413.1| GntR family transcriptional regulator [Verminep... 217 1e-54 ref|YP_004487964.1| GntR family transcriptional regulator [Delft... 193 1e-47 ref|YP_001565270.1| GntR family transcriptional regulator [Delft... 192 3e-47 ref|YP_001415346.1| GntR family transcriptional regulator [Xanth... 187 1e-45 >ref|YP_003776829.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64921.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 233/234 (99%), Positives = 233/234 (99%) Query: 1 MDPTLIADLSTMRKIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGTSPMPVR 60 MDPTLIADLSTMRKIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGTSPMPVR Sbjct: 1 MDPTLIADLSTMRKIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGTSPMPVR 60 Query: 61 EAVRQLAAEGALEILPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAVGLEQV 120 EAVRQLAAEGALEILPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAVGLEQV Sbjct: 61 EAVRQLAAEGALEILPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAVGLEQV 120 Query: 121 ARLHDTLSVEMKRKRPNVDLVIRLNKQLHFAAYQGSGTPTLVDLIAGLWLQVGPVINLDL 180 ARLHDTLSVEMKRKRPNVDLVIRLNKQLHFAAYQGSG PTLVDLIAGLWLQVGPVINLDL Sbjct: 121 ARLHDTLSVEMKRKRPNVDLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDL 180 Query: 181 RAGSRRLAEAPALVHHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAGDGLPD 234 RAGSRRLAEAPALVHHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAGDGLPD Sbjct: 181 RAGSRRLAEAPALVHHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAGDGLPD 234 >ref|YP_999413.1| GntR family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gb|ABM60395.1| transcriptional regulator, GntR family [Verminephrobacter eiseniae EF01-2] Length = 224 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 118/221 (53%), Positives = 164/221 (74%) Query: 12 MRKIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGTSPMPVREAVRQLAAEGA 71 M+ + H TLS RVY+DL E I +GQV+PG++LTL G+A ALGTS MP+REAV++LAAEGA Sbjct: 1 MQPLVHLTLSARVYEDLRERIISGQVQPGERLTLAGMASALGTSAMPIREAVQKLAAEGA 60 Query: 72 LEILPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAVGLEQVARLHDTLSVEM 131 LEILPN+++ VP+MT+ +F+EL+ IR+A+EGLA++ AA I L ++A L E Sbjct: 61 LEILPNKSVGVPVMTRTRFQELVTIRIAVEGLAVQTAASLITDAQLARLAELEKAFRTER 120 Query: 132 KRKRPNVDLVIRLNKQLHFAAYQGSGTPTLVDLIAGLWLQVGPVINLDLRAGSRRLAEAP 191 + P+V+ +I++NKQ HF AY+ +G PTL+ LI GLWL++GPV+NLD+R GS RLA P Sbjct: 121 RLATPDVNRIIQINKQFHFGAYEAAGMPTLLTLIEGLWLRIGPVLNLDIRNGSSRLANPP 180 Query: 192 ALVHHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAGDGL 232 ++ H +L+GLRA AR GL D+ AA++IL+GDGL Sbjct: 181 SVRAHRAMLDGLRAHDGLAARNGLAMDIQCAADVILSGDGL 221 >ref|YP_004487964.1| GntR family transcriptional regulator [Delftia sp. Cs1-4] gb|AEF89609.1| transcriptional regulator, GntR family [Delftia sp. Cs1-4] Length = 251 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 106/215 (49%), Positives = 146/215 (67%) Query: 15 IQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGTSPMPVREAVRQLAAEGALEI 74 ++ TLS VY L EL+ GQ+ PG++++L+ A ALG S MPVREAV +L AE ALE+ Sbjct: 10 LKRQTLSSDVYAQLRELLITGQMIPGEQISLRTTASALGVSVMPVREAVHRLVAEQALEL 69 Query: 75 LPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAVGLEQVARLHDTLSVEMKRK 134 PNRA+RVPLMT+ FRE+ +IR+ LEGLA E AAR + A LE++A L D + EM Sbjct: 70 TPNRALRVPLMTESAFREITRIRVNLEGLATEQAARQLPAAELERIAALQDRFAAEMASA 129 Query: 135 RPNVDLVIRLNKQLHFAAYQGSGTPTLVDLIAGLWLQVGPVINLDLRAGSRRLAEAPALV 194 P+ +I NK HFA Y +G P L+ +I LWL++GP++N D+R+GSRR++E A+ Sbjct: 130 SPDGARLIAFNKDFHFAVYSAAGMPMLLQMIEALWLRIGPILNHDMRSGSRRVSEQVAVG 189 Query: 195 HHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAG 229 HHARL+E LR G A+ L GD+ SAA+ I++ Sbjct: 190 HHARLVEALRRGDAPAAKEALRGDIESAADYIVSA 224 >ref|YP_001565270.1| GntR family transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX36885.1| transcriptional regulator, GntR family [Delftia acidovorans SPH-1] Length = 251 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 106/215 (49%), Positives = 146/215 (67%) Query: 15 IQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGTSPMPVREAVRQLAAEGALEI 74 ++ TLS VY L EL+ GQ+ PG++++L+ A ALG S MPVREAV +L AE ALE+ Sbjct: 10 LKRQTLSSDVYAQLRELLITGQMIPGEQISLRTTASALGVSVMPVREAVHRLVAEQALEL 69 Query: 75 LPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAVGLEQVARLHDTLSVEMKRK 134 PNRA+RVPLMT+ FRE+ +IR+ LEGLA E AAR + A LE++A L D + EM Sbjct: 70 TPNRALRVPLMTESAFREITRIRVNLEGLATEQAARQLPAAELERIAALQDRFAAEMASA 129 Query: 135 RPNVDLVIRLNKQLHFAAYQGSGTPTLVDLIAGLWLQVGPVINLDLRAGSRRLAEAPALV 194 P+ +I NK HFA Y +G P L+ +I LWL++GP++N D+R+GSRR++E A+ Sbjct: 130 VPDGARLIAFNKDFHFAVYSAAGMPMLLQMIEALWLRIGPILNHDMRSGSRRVSEQVAVG 189 Query: 195 HHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAG 229 HHARL+E LR G A+ L GD+ SAA+ I++ Sbjct: 190 HHARLVEALRRGDAPAAKEALRGDIESAADYIVSA 224 >ref|YP_001415346.1| GntR family transcriptional regulator [Xanthobacter autotrophicus Py2] gb|ABS65689.1| transcriptional regulator, GntR family [Xanthobacter autotrophicus Py2] Length = 249 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 104/221 (47%), Positives = 144/221 (65%) Query: 14 KIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGTSPMPVREAVRQLAAEGALE 73 +I TL+++VY DL E++ +G+ PG++ TL+GLA A+GTS MPVREAV +L AE ALE Sbjct: 29 RIVRQTLADQVYGDLKEILLSGRAAPGERFTLRGLAGAIGTSAMPVREAVSRLVAENALE 88 Query: 74 ILPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAVGLEQVARLHDTLSVEMKR 133 +LPNRA+RVPLM + +F+EL IR +LEGLA E A R + +V R + E + Sbjct: 89 VLPNRAVRVPLMPRARFQELRLIRCSLEGLATEIAVREASDAEIAEVERFERLFAAERDK 148 Query: 134 KRPNVDLVIRLNKQLHFAAYQGSGTPTLVDLIAGLWLQVGPVINLDLRAGSRRLAEAPAL 193 +P+ +R NK LHFA Y+ + P L +I GLWLQ+GPV+NLD RAG R+ + A Sbjct: 149 PQPDGAEAMRHNKDLHFALYRAAHLPALFQMIEGLWLQIGPVLNLDFRAGPERVRQGEAH 208 Query: 194 VHHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAGDGLPD 234 + HA ++ L+A P AR L D+ SA + IL+ D LPD Sbjct: 209 IRHAAMVAALKARDPAAARTALVADIWSAGDFILSRDVLPD 249