BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4310.p (222 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776827.1| DedA transmembrane protein [Herbaspirillum s... 361 6e-98 ref|YP_002151518.1| hypothetical protein PMI1788 [Proteus mirabi... 282 3e-74 ref|YP_004846533.1| DedA family protein [Pseudogulbenkiania sp. ... 273 2e-71 ref|ZP_03699620.1| SNARE associated Golgi protein [Lutiella nitr... 272 2e-71 ref|YP_001907110.1| hypothetical protein ETA_11700 [Erwinia tasm... 271 5e-71 >ref|YP_003776827.1| DedA transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64919.1| DedA transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 213 Score = 361 bits (926), Expect = 6e-98, Method: Composition-based stats. Identities = 205/213 (96%), Positives = 211/213 (99%) Query: 10 MDILLFLVDFIVHIDRHLAELAVSYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGA 69 MDILLFLVDFIVHIDRHLAELA SYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGA Sbjct: 1 MDILLFLVDFIVHIDRHLAELAASYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGA 60 Query: 70 LAATGAYDIHLMLLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYLEKTHAFFE 129 LAATGAYDI+LM+LTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYL+KTHAFFE Sbjct: 61 LAATGAYDINLMVLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYLDKTHAFFE 120 Query: 130 KHGGKAIIIARFAPIVRTFAPFVAGVGAMTYSRFFLYNVIGGIAWVASFAYAGYFFGNLP 189 KHGGKAIIIARFAPIVRTFAPFVAGVGAMTY+RFFLYNV+GGIAWVASFAYAGYFFGN+P Sbjct: 121 KHGGKAIIIARFAPIVRTFAPFVAGVGAMTYTRFFLYNVVGGIAWVASFAYAGYFFGNMP 180 Query: 190 IVKKNLSLLIVAIVILSILPGIIEYFRHKRRPG 222 IVKKNLSLLIVAIVILSILPGIIEY RHKRRPG Sbjct: 181 IVKKNLSLLIVAIVILSILPGIIEYIRHKRRPG 213 >ref|YP_002151518.1| hypothetical protein PMI1788 [Proteus mirabilis HI4320] ref|ZP_03840540.1| DedA family protein [Proteus mirabilis ATCC 29906] emb|CAR43719.1| putative membrane protein [Proteus mirabilis HI4320] gb|EEI48531.1| DedA family protein [Proteus mirabilis ATCC 29906] Length = 233 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 147/219 (67%), Positives = 178/219 (81%), Gaps = 2/219 (0%) Query: 3 LSLIFRLMDILLFLVDFIVHIDRHLAELAVSYGPWLFLILFLIIFCETGLVVTPILPGDS 62 + L+ + D++ FL+DFI+HID HLAEL YG W++ ILFLIIFCETGLVVTP LPGDS Sbjct: 1 MELLTQFADLIKFLIDFILHIDVHLAELVAQYGTWVYAILFLIIFCETGLVVTPFLPGDS 60 Query: 63 LLFVTGALAA--TGAYDIHLMLLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEY 120 LLFV GAL+A T ++HLM+L L+ AAILGD+ NY IG++ G K+F PNSRIFK+EY Sbjct: 61 LLFVAGALSALDTNDVNVHLMVLLLLFAAILGDAVNYSIGRIFGEKLFSNPNSRIFKREY 120 Query: 121 LEKTHAFFEKHGGKAIIIARFAPIVRTFAPFVAGVGAMTYSRFFLYNVIGGIAWVASFAY 180 L+KTHAF+EKHGGKAII+ARF PIVRTFAPFVAG+G M+Y F YNV G IAWV F Y Sbjct: 121 LDKTHAFYEKHGGKAIILARFVPIVRTFAPFVAGMGKMSYRHFAFYNVTGAIAWVLLFTY 180 Query: 181 AGYFFGNLPIVKKNLSLLIVAIVILSILPGIIEYFRHKR 219 AGYFFG+L IV+KNL LLIVAI+++SILPG+IE RH+R Sbjct: 181 AGYFFGDLDIVQKNLKLLIVAIIVISILPGVIEVIRHRR 219 >ref|YP_004846533.1| DedA family protein [Pseudogulbenkiania sp. NH8B] dbj|BAK76119.1| DedA family protein [Pseudogulbenkiania sp. NH8B] Length = 218 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 138/210 (65%), Positives = 172/210 (81%), Gaps = 1/210 (0%) Query: 10 MDILLFLVDFIVHIDRHLAELAVSYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGA 69 M+ L FL+DF++HIDRHLA L YGPW++LILFLI+FCETGLVVTP+LPGDSLLFV G Sbjct: 4 MEALQFLLDFVLHIDRHLAVLVAQYGPWIYLILFLIVFCETGLVVTPVLPGDSLLFVAGT 63 Query: 70 LAATGAYDIHLMLLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYLEKTHAFFE 129 LAATG + H +++TLI AA+LGDS NY IG+ LG+ + + R+ K++YL+KTHAF+E Sbjct: 64 LAATGGMNAHALVVTLIAAAVLGDSVNYTIGRRLGLSLMAR-FPRLLKQQYLDKTHAFYE 122 Query: 130 KHGGKAIIIARFAPIVRTFAPFVAGVGAMTYSRFFLYNVIGGIAWVASFAYAGYFFGNLP 189 +HGGK II+ARF PIVRTFAPFVAG GAM+Y RFF YN+IGG+ WVASF YAGY FGNLP Sbjct: 123 RHGGKTIILARFVPIVRTFAPFVAGAGAMSYRRFFAYNIIGGVLWVASFTYAGYLFGNLP 182 Query: 190 IVKKNLSLLIVAIVILSILPGIIEYFRHKR 219 +VK NL LI I+ +S+LPG++E +RHKR Sbjct: 183 VVKSNLEYLIFGIIFVSLLPGLVEIWRHKR 212 >ref|ZP_03699620.1| SNARE associated Golgi protein [Lutiella nitroferrum 2002] gb|EEG07302.1| SNARE associated Golgi protein [Lutiella nitroferrum 2002] Length = 218 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 138/210 (65%), Positives = 171/210 (81%), Gaps = 1/210 (0%) Query: 10 MDILLFLVDFIVHIDRHLAELAVSYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGA 69 M+ L FL+DF++HIDRHLA L YGPW++LILFLI+FCETGLVVTP+LPGDSLLFV G Sbjct: 4 MEALQFLLDFVLHIDRHLAVLVAQYGPWIYLILFLIVFCETGLVVTPVLPGDSLLFVAGT 63 Query: 70 LAATGAYDIHLMLLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYLEKTHAFFE 129 LAATG + H ++ TLI AA+LGDS NY IG+ LG+ + + R+ K++YL+KTHAF+E Sbjct: 64 LAATGGMNAHALVATLIAAAVLGDSVNYTIGRRLGLSLMAR-FPRLLKQQYLDKTHAFYE 122 Query: 130 KHGGKAIIIARFAPIVRTFAPFVAGVGAMTYSRFFLYNVIGGIAWVASFAYAGYFFGNLP 189 +HGGK II+ARF PIVRTFAPFVAG GAM+Y RFF YN+IGG+ WVASF YAGY FGNLP Sbjct: 123 RHGGKTIILARFVPIVRTFAPFVAGAGAMSYRRFFAYNIIGGVLWVASFTYAGYLFGNLP 182 Query: 190 IVKKNLSLLIVAIVILSILPGIIEYFRHKR 219 +VK NL LI I+ +S+LPG++E +RHKR Sbjct: 183 VVKSNLEYLIFGIIFVSLLPGLVEIWRHKR 212 >ref|YP_001907110.1| hypothetical protein ETA_11700 [Erwinia tasmaniensis Et1/99] emb|CAO96216.1| DedA protein (Dsg-1 protein) [Erwinia tasmaniensis Et1/99] Length = 220 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 139/212 (65%), Positives = 172/212 (81%), Gaps = 2/212 (0%) Query: 10 MDILLFLVDFIVHIDRHLAELAVSYGPWLFLILFLIIFCETGLVVTPILPGDSLLFVTGA 69 MD++ F+VDFI+HID HLAEL YG W++ ILFLI+FCETGLVVTP LPGDSLLFV GA Sbjct: 1 MDLVRFVVDFILHIDVHLAELVSQYGIWIYAILFLILFCETGLVVTPFLPGDSLLFVAGA 60 Query: 70 LAATGAYD--IHLMLLTLIVAAILGDSTNYQIGKMLGIKVFDKPNSRIFKKEYLEKTHAF 127 LAA D +H M+ ++VAAILGD+ NY IGK G ++F PNS+IF++ YL+KTHAF Sbjct: 61 LAALPGNDLNVHTMVALMVVAAILGDAVNYMIGKQFGARLFSNPNSKIFRRSYLDKTHAF 120 Query: 128 FEKHGGKAIIIARFAPIVRTFAPFVAGVGAMTYSRFFLYNVIGGIAWVASFAYAGYFFGN 187 ++KHGGK II+ARF PIVRTFAPFVAG+G M+Y F +YNV GG+ WV F YAGYFFGN Sbjct: 121 YDKHGGKTIILARFVPIVRTFAPFVAGMGKMSYRHFSMYNVSGGLLWVLLFTYAGYFFGN 180 Query: 188 LPIVKKNLSLLIVAIVILSILPGIIEYFRHKR 219 +P V++NL LLIVAI++LSILPG+IE +RH+R Sbjct: 181 IPAVQENLKLLIVAIILLSILPGVIEVWRHRR 212