BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4304.p (589 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbasp... 689 0.0 ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthin... 416 e-114 ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthin... 409 e-112 ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbasp... 399 e-109 ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herba... 390 e-106 >ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ64914.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 460/548 (83%), Positives = 491/548 (89%), Gaps = 2/548 (0%) Query: 1 MRFNNLNISTRLAIGFSALIVVIAAIVTLSLARLGDINESLELVVNDRYKKINIVNAISG 60 MRFNNL+I+TRLAI FS LI+VIA IV L LARL DIN++L+LVVNDRYKKI I+N ISG Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 61 KVDDVAISLRNQLFMTDPAQIENERKNIETLSAENTKLYDELGRLITNPEARAKFDKVTE 120 KVDDVAISLRNQL MTDPAQI E+K IE+LSAENTKLYDEL RL+ NPEA+AK DKVTE Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTE 120 Query: 121 TRKSYAALRKEIDRLATTGEKDTAIKLMLEKMVPLQKQYFGQLDDLSDMQQKLMDKSVAD 180 TRKSYAALRK+ID+L ++G+KD AIKLML +MVPLQK YF QLD+LSD QQKLMD+SV Sbjct: 121 TRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQ 180 Query: 181 AEVTYTITRNIMLVSGVLAALFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIDAH 240 AE Y TR IM+++GVLAA FAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVI AH Sbjct: 181 AEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAAH 240 Query: 241 STDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEE 300 S DETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEE Sbjct: 241 SNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEE 300 Query: 301 TASSLEQLTSSVKQNADHTRKSSELAGNATQVANQGGQAVKQVVQTMGAINDSSRKIVDI 360 TASSLE+LTSSVKQNADHTRKSSELA NA+QVANQGG AVKQVVQTMGAINDSS KIVDI Sbjct: 301 TASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSHKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDS Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDS 420 Query: 421 VNQVSSGTELVAQAGNTMDEVVQSIEQVSHIVGEISAASHEQSDGIEQVNQAIMQMDNTT 480 VNQV+SGTELVAQAG+TMD VV SIEQVSHIVGEISAA+ EQSDGIEQVNQAIMQMDNTT Sbjct: 421 VNQVTSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIEQVNQAIMQMDNTT 480 Query: 481 QQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDDAGGP-ELRTMQAPQAAAL-KSSAVT 538 QQNAALVEEAAAAAQALQDQAQRLL+LV VFRLD+ GG + AP A L K SA Sbjct: 481 QQNAALVEEAAAAAQALQDQAQRLLDLVGVFRLDEVGGSGPAPSAVAPVAPVLRKVSAAA 540 Query: 539 SKALPSKP 546 +A S P Sbjct: 541 PRATKSLP 548 >ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89882.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 279/544 (51%), Positives = 376/544 (69%), Gaps = 2/544 (0%) Query: 5 NLNISTRLAIGFSALIVVIAAIVTLSLARLGDINESLELVVNDRYKKINIVNAISGKVDD 64 NL I RL++ F ++++++ + TL+ R+G +N+++ V DRY K + N + ++ Sbjct: 3 NLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDLNQ 62 Query: 65 VAISLRNQLFMTDPAQIENERKNIETLSAENTKLYDELGRLITNPEARAKFDKVTETRKS 124 +A ++RN L MT+ A I+ E I + EL + + + R + R Sbjct: 63 IARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADRSK 122 Query: 125 YAALRKEIDRLATTGEKDTAIKLMLEKMVPLQKQYFGQLDDLSDMQQKLMDKSVADAEVT 184 + L+ + +LA+ G KD A+ L+ ++ P Q Y +D L D Q +LM KS A+A Sbjct: 123 FLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEANAK 182 Query: 185 YTITRNIMLVSGVLAALFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIDAHSTDE 244 + T+ ++ + ++A L AA A +RSITRPLS+AV +A VA GDLT I S DE Sbjct: 183 ASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESKDE 242 Query: 245 TGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEETASS 304 TG+LLQAL MN+ L IV +VR GTD++ +AS QIATGNLDLSSRTE+QAS+LEETASS Sbjct: 243 TGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETASS 302 Query: 305 LEQLTSSVKQNADHTRKSSELAGNATQVANQGGQAVKQVVQTMGAINDSSRKIVDIISVI 364 +E+LTS+VKQNA++ R+S++LA +A++VA +GG V +VV TMG INDS++KIVDII VI Sbjct: 303 MEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIGVI 362 Query: 365 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDSVNQV 424 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIKELI DSV++V Sbjct: 363 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVDKV 422 Query: 425 SSGTELVAQAGNTMDEVVQSIEQVSHIVGEISAASHEQSDGIEQVNQAIMQMDNTTQQNA 484 S G+ LV AG TM EVV+S+++V+ I+ EI+AAS EQ+DGIEQ+NQA+MQMD TQQNA Sbjct: 423 SIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQNA 482 Query: 485 ALVEEAAAAAQALQDQAQRLLELVSVFRLDDAGGPELRTMQAPQAAALKSSAVTSKALPS 544 ALVEEAAAAA++LQ QA L ++V VF+LD G + + P A + V KA Sbjct: 483 ALVEEAAAAAESLQGQASHLSQVVGVFKLDGHGTTVVNAV--PTYTAPEQPKVAGKAALH 540 Query: 545 KPQT 548 K +T Sbjct: 541 KVKT 544 >ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89943.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 286/553 (51%), Positives = 383/553 (69%), Gaps = 13/553 (2%) Query: 5 NLNISTRLAIGFSALIVVIAAIVTLSLARLGDINESLELVVNDRYKKINIVNAISGKVDD 64 NL I RLA+ F +++ V+ + ++ RL ++ ++ +V NDRY K + I +++ Sbjct: 3 NLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTLNE 62 Query: 65 VAISLRNQLFMTDPAQIENERKNIETLSAENTKLYDELGRLITNPEARAKFDKVTETRKS 124 A ++RN L MTD AQI+ E IE S + D+L R I + + R +T+ R Sbjct: 63 TARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDARGR 122 Query: 125 YAALRKEIDRLATTGEKDTAIKLMLEKMVPLQKQYFGQLDDLSDMQQKLMDKSVADAEVT 184 + ++ + L G + A L+ ++ P Q +Y LD L + Q LM K+ DA Sbjct: 123 FTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAHEV 182 Query: 185 YTITRNIMLVSGVLAALFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIDAHSTDE 244 + ++ + V+A + +AF+ + +RSITRPLS+AV +A VA GDLT I S DE Sbjct: 183 SANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSKDE 242 Query: 245 TGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEETASS 304 TG+LLQAL MN L IV +VR GTD++ TAS+QIATGNLDLSSRTEEQAS+LEETASS Sbjct: 243 TGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETASS 302 Query: 305 LEQLTSSVKQNADHTRKSSELAGNATQVANQGGQAVKQVVQTMGAINDSSRKIVDIISVI 364 +E+LTS+VKQNAD+ R+S++LA A++VA +GG V QVV+TMG+INDS+ KIVDII VI Sbjct: 303 MEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIGVI 362 Query: 365 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDSVNQV 424 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK LI+DSV +V Sbjct: 363 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVEKV 422 Query: 425 SSGTELVAQAGNTMDEVVQSIEQVSHIVGEISAASHEQSDGIEQVNQAIMQMDNTTQQNA 484 ++G+ LV AG TM EVV+S+ +V+ I+GEI+AAS EQ+DGIEQ+NQA+MQMD TQQNA Sbjct: 423 NNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQNA 482 Query: 485 ALVEEAAAAAQALQDQAQRLLELVSVFRLDDAGGPELRTMQAPQAAALKSSAVTSKALPS 544 ALVEEAAAAA++LQDQA L ++VSVF+LD A AL++++ + A S Sbjct: 483 ALVEEAAAAAESLQDQANNLSQVVSVFKLD------------ANAVALQATSRVA-APAS 529 Query: 545 KPQTQPHPQAQSA 557 +P ++P Q +SA Sbjct: 530 RPVSKPAQQIRSA 542 >ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ62877.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 285/556 (51%), Positives = 381/556 (68%), Gaps = 1/556 (0%) Query: 1 MRFNNLNISTRLAIGFSALIVVIAAIVTLSLARLGDINESLELVVNDRYKKINIVNAISG 60 M+ +++ IS RL F+ALIVV+ I + + L ++++ + +VNDRY K+ + I+ Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 KVDDVAISLRNQLFMTDPAQIENERKNIETLSAENTKLYDELGRLITNPEARAKFDKVTE 120 KV+ A SLRN + +P + + ++T +++ ++ E+ + P + + Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 TRKSYAALRKEIDRLATTGEKDTAIKLMLEKMVPLQKQYFGQLDDLSDMQQKLMDKSVAD 180 R Y+ R ++ L ++D A + +K +P+Q +YF + ++ Q LMDKS Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 AEVTYTITRNIMLVSGVLAALFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIDAH 240 A + NIMLV +A L +A A I+RSITRPL+ AV+VA VAAGDLT I+A Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 STDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEE 300 S DETG LL AL +MN L IV EVR GTD++ TAS +IATGNLDLSSRTE+QA ALEE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEE 301 Query: 301 TASSLEQLTSSVKQNADHTRKSSELAGNATQVANQGGQAVKQVVQTMGAINDSSRKIVDI 360 TAS++E+LTS+V+QNAD+ R+++ LA A+QVA QGG V +VVQTMG IND+SRKIVDI Sbjct: 302 TASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDI 361 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK LI+ S Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDAS 421 Query: 421 VNQVSSGTELVAQAGNTMDEVVQSIEQVSHIVGEISAASHEQSDGIEQVNQAIMQMDNTT 480 V +V SG+ LV QAG TM+EVV S+++V+ +V EI+AAS EQSDGIEQ+NQAI+QMD T Sbjct: 422 VERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 481 Query: 481 QQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDDAGGPELRTMQAPQAAALKSSAVTSK 540 QQNAALVE+AAAAAQ+LQ+Q+ RL + V +FRL + + + AP +++ A Sbjct: 482 QQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQPSPLSAPVQRSVQ-VAPARP 540 Query: 541 ALPSKPQTQPHPQAQS 556 L KP T+ A+S Sbjct: 541 VLARKPVTRTSAPAKS 556 >ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ61560.1| methyl-accepting chemotaxis protein I protein [Herbaspirillum seropedicae SmR1] Length = 534 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 277/532 (52%), Positives = 373/532 (70%), Gaps = 1/532 (0%) Query: 1 MRFNNLNISTRLAIGFSALIVVIAAIVTLSLARLGDINESLELVVNDRYKKINIVNAISG 60 M+ +N+ I RL +GF L+V++ A+ +ARLG +N ++ V++D+Y K + I Sbjct: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNAQMKDVIHDKYPKTVVAGDIVD 60 Query: 61 KVDDVAISLRNQLFMTDPAQIENERKNIETLSAENTKLYDELGRLITNPEARAKFDKVTE 120 +++ +A S+RN L + QI++E + I + +L +L+T+ ++RA + Sbjct: 61 QLNLIARSVRNILLLKREPQIKSEYERISGADRAIREDLAQLDKLLTDGDSRAALTTLVT 120 Query: 121 TRKSYAALRKEIDRLATTGEKDTAIKLMLEKMVPLQKQYFGQLDDLSDMQQKLMDKSVAD 180 + +Y R ++ + G K+ AI ++++++ P+Q D L Q ++M + + Sbjct: 121 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMNAADALIRQQHEMMKTAGDE 180 Query: 181 AEVTYTITRNIMLVSGVLAALFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIDAH 240 E Y R ++L+ AA IAW I+RSIT PL RAV VAETVAAGDLT+ IDAH Sbjct: 181 VESNYAQARTLLLLLAAAGLAAAAVIAWMITRSITAPLDRAVRVAETVAAGDLTSAIDAH 240 Query: 241 STDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEE 300 DET LL+AL MN +L IV +VR TD++ TAS++IA GNLDLSSRTEEQA++LEE Sbjct: 241 GRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEE 300 Query: 301 TASSLEQLTSSVKQNADHTRKSSELAGNATQVANQGGQAVKQVVQTMGAINDSSRKIVDI 360 TASS+EQLT++VKQNA H ++S+LAG+A+ +A QGG+ V VV+TMGAI+ SS+KIVDI Sbjct: 301 TASSMEQLTATVKQNASHAGQASQLAGSASDIARQGGEVVGHVVETMGAIDASSKKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDS 420 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRSATAA EIK LI DS Sbjct: 361 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAHEIKALIADS 420 Query: 421 VNQVSSGTELVAQAGNTMDEVVQSIEQVSHIVGEISAASHEQSDGIEQVNQAIMQMDNTT 480 V +V +G++LV QAG TM EVVQS+++V +V EIS+A EQS GIEQVN AI+QMD T Sbjct: 421 VARVGNGSKLVEQAGRTMHEVVQSVQRVGEVVNEISSAGQEQSAGIEQVNLAIVQMDQVT 480 Query: 481 QQNAALVEEAAAAAQALQDQAQRLLELVSVFRLDDAGGPELRTMQAPQAAAL 532 QQNAALVE+AAAAAQALQDQA +L +VS+F+L+DA E R + AP + L Sbjct: 481 QQNAALVEQAAAAAQALQDQAAQLARMVSIFKLEDAAS-EPRRVAAPASPRL 531