BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4298.p         (542 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776816.1| paraquat-inducible B protein [Herbaspirillum...   975   0.0  
ref|YP_004752913.1| paraquat-inducible protein B [Collimonas fun...   719   0.0  
ref|YP_001352744.1| paraquat-inducible protein B [Janthinobacter...   703   0.0  
ref|YP_002944779.1| hypothetical protein Vapar_2893 [Variovorax ...   699   0.0  
ref|YP_004155432.1| mammalian cell entry related domain-containi...   694   0.0  

>ref|YP_003776816.1| paraquat-inducible B protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64908.1| paraquat-inducible B protein [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score =  975 bits (2520), Expect = 0.0,   Method: Composition-based stats.
 Identities = 499/542 (92%), Positives = 526/542 (97%)

Query: 1   MTPPDHSDDKPALLQPRRARQRNWLPSLVWLIPIVAAIVGLTLVAKILVERGPVVTVSFR 60
           MTPPD  +DKPALLQPRR RQRNWLPSLVWLIPI+AA+VGL+LVAKIL++RGP+VTV+FR
Sbjct: 1   MTPPDTPEDKPALLQPRRTRQRNWLPSLVWLIPIIAAVVGLSLVAKILIDRGPLVTVTFR 60

Query: 61  SAEGLEAGKTKVKYKDVEIGQVQSLKLAADRSHVLVGIQLNQDASGFNAEDTRFWVVRPR 120
           SAEGLEAGKT+VKYKDVEIGQVQ+LKLA DRSHVLVGIQLN++A+GF+AEDTR+WVVRPR
Sbjct: 61  SAEGLEAGKTRVKYKDVEIGQVQTLKLAPDRSHVLVGIQLNKEAAGFDAEDTRYWVVRPR 120

Query: 121 IAASGISGLGTLLSGAYIGADAGASEETKKNFVGLEQPPIVTRDASGRQFVLHTDDLGSL 180
           IAASGISGLGTLLSGAYIGAD GASE++KK+FVGLEQPPIVTRDASGRQFVLHT+DLGSL
Sbjct: 121 IAASGISGLGTLLSGAYIGADPGASEQSKKSFVGLEQPPIVTRDASGRQFVLHTNDLGSL 180

Query: 181 DIGSPIFYRRIKVGQVVAYDLDSDGRGVTLRIFVNAPYDKFVTQASRFWHASGFDMELNA 240
           DIGSPIFYRRIKVGQVVAYDLD+DGRGVTLRIFVNAPYDKFVTQ SRFWHASGFDMELNA
Sbjct: 181 DIGSPIFYRRIKVGQVVAYDLDADGRGVTLRIFVNAPYDKFVTQTSRFWHASGFDMELNA 240

Query: 241 SGFKLHTQALSTVVLGGIAFRDRDEERVSPPAKEGSEYPLVEDESTAMKEPDGVPQTALL 300
           SGFKLHTQAL+TVVLGGIAFRDRDE+RVS PAKEG+EY LVEDES AMKEPDGVPQTALL
Sbjct: 241 SGFKLHTQALATVVLGGIAFRDRDEDRVSAPAKEGAEYALVEDESAAMKEPDGVPQTALL 300

Query: 301 YFDQSLRGLQPGATVDFRGVVLGEVKSIGVEYDKTRGEFRMPVLVQIYPDRLGRRFHEET 360
           YFDQSLRGLQPGATVDFRGVVLGEVKSIGVEYDK RGEFRMPV+VQIYP+RLGRRF EET
Sbjct: 301 YFDQSLRGLQPGATVDFRGVVLGEVKSIGVEYDKARGEFRMPVVVQIYPERLGRRFQEET 360

Query: 361 GEQRRSNAQLLRMLVKRGMRAQLRNGNLLTGQLYVAIDFFPKAKPVQIDPDKVPLELPTI 420
           GEQRRSNA LLR LVKRG+RAQLRNGNLLTGQLYVAIDFFPKAKP QIDPDK PLELPTI
Sbjct: 361 GEQRRSNAHLLRTLVKRGLRAQLRNGNLLTGQLYVAIDFFPKAKPAQIDPDKTPLELPTI 420

Query: 421 PGSLDELQQQLSDIAGKLSKVPFDEIGRDLQTTLKTLNKTLTTAEQTAARINNDIAPEMQ 480
           PGSLDELQQQLSDIAGKLSKVPFDEIGRDLQTTLKTLNKTL+TAEQTAARINNDIAPEMQ
Sbjct: 421 PGSLDELQQQLSDIAGKLSKVPFDEIGRDLQTTLKTLNKTLSTAEQTAARINNDIAPEMQ 480

Query: 481 AAMKDARKTLNAAERTLSDDAPLQSDIRQTMQELSKAAASIRILTDYLQQHPESLIRGKQ 540
           AAMKDARKTLNAAERTLSDDAPLQ DIRQTMQELSKAAASIRILTDYLQQHPESLIRGKQ
Sbjct: 481 AAMKDARKTLNAAERTLSDDAPLQQDIRQTMQELSKAAASIRILTDYLQQHPESLIRGKQ 540

Query: 541 EP 542
           EP
Sbjct: 541 EP 542


>ref|YP_004752913.1| paraquat-inducible protein B [Collimonas fungivorans Ter331]
 gb|AEK62090.1| Paraquat-inducible protein B [Collimonas fungivorans Ter331]
          Length = 544

 Score =  719 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/534 (66%), Positives = 438/534 (82%), Gaps = 1/534 (0%)

Query: 8   DDKPALLQPRRARQRNWLPSLVWLIPIVAAIVGLTLVAKILVERGPVVTVSFRSAEGLEA 67
           D  P L +P+ +R+R+WLPSL+WLIPIVAA+VGLTLV KILVERGP +T++FR+AEGLEA
Sbjct: 9   DALPPLPEPKLSRKRDWLPSLIWLIPIVAAVVGLTLVVKILVERGPSITITFRTAEGLEA 68

Query: 68  GKTKVKYKDVEIGQVQSLKLAADRSHVLVGIQLNQDASGFNAEDTRFWVVRPRIAASGIS 127
           GKTKVKYKDV+IG VQ++ L+ DRSHVL  +QL+++A  F A DTRFWVVRPR+AASG+S
Sbjct: 69  GKTKVKYKDVDIGLVQTITLSKDRSHVLANVQLSKEAESFTAADTRFWVVRPRVAASGVS 128

Query: 128 GLGTLLSGAYIGADAGASEETKKNFVGLEQPPIVTRDASGRQFVLHTDDLGSLDIGSPIF 187
           GLGTLLSGAYIGADAG S+E K  F GLE  PIV  DASG+Q++LH  D+GSLDIGSP++
Sbjct: 129 GLGTLLSGAYIGADAGTSKEKKDEFTGLEVQPIVRLDASGKQYMLHAADIGSLDIGSPVY 188

Query: 188 YRRIKVGQVVAYDLDSDGRGVTLRIFVNAPYDKFVTQASRFWHASGFDMELNASGFKLHT 247
           +RRIKVGQ+ A+DLD+DG+GVTLRIF++APYDKF+   +RFWHASGFDM++NASGFKL T
Sbjct: 189 FRRIKVGQLAAFDLDADGKGVTLRIFIDAPYDKFIGINTRFWHASGFDMQINASGFKLRT 248

Query: 248 QALSTVVLGGIAFRDRDEERVSPPAKEGSEYPLVEDESTAMKEPDGVPQTALLYFDQSLR 307
           Q+L+TVVLGGIAF+  D + +   AKE + + L  DE  A+KEPDG  +T ++YF+QSLR
Sbjct: 249 QSLATVVLGGIAFQAPD-DLLGATAKENTTFNLAADEEAALKEPDGPSETVVMYFNQSLR 307

Query: 308 GLQPGATVDFRGVVLGEVKSIGVEYDKTRGEFRMPVLVQIYPDRLGRRFHEETGEQRRSN 367
           GL PG TVDFRGVVLGEVKSIG+EYD  R EF MPV+VQ+YP+RLGRR+ E+      + 
Sbjct: 308 GLTPGTTVDFRGVVLGEVKSIGIEYDAKRREFNMPVVVQVYPERLGRRYAEDEKHSSYTA 367

Query: 368 AQLLRMLVKRGMRAQLRNGNLLTGQLYVAIDFFPKAKPVQIDPDKVPLELPTIPGSLDEL 427
            Q L+ +V RG+RAQLR GNLLTGQLY+A+DFFPKA P  +D     +ELPTIP SLDE+
Sbjct: 368 KQRLQYMVSRGLRAQLRTGNLLTGQLYIALDFFPKAAPATVDTSTTIIELPTIPNSLDEI 427

Query: 428 QQQLSDIAGKLSKVPFDEIGRDLQTTLKTLNKTLTTAEQTAARINNDIAPEMQAAMKDAR 487
           Q Q+++IA KLSKVPFD+I  DLQ TL TLN+TL  AEQ    +NND+APE+ AAMKD R
Sbjct: 428 QSQIAEIAKKLSKVPFDQIAADLQKTLGTLNRTLLNAEQLTKSLNNDVAPEITAAMKDVR 487

Query: 488 KTLNAAERTLSDDAPLQSDIRQTMQELSKAAASIRILTDYLQQHPESLIRGKQE 541
            TL+ A RTLSD+APLQ DIR T+QEL+++AAS+RILTDYL++HPE+LIRGKQE
Sbjct: 488 VTLDNANRTLSDNAPLQQDIRATLQELTRSAASVRILTDYLERHPEALIRGKQE 541


>ref|YP_001352744.1| paraquat-inducible protein B [Janthinobacterium sp. Marseille]
 gb|ABR88965.1| paraquat-inducible protein B [Janthinobacterium sp. Marseille]
          Length = 543

 Score =  703 bits (1814), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/538 (64%), Positives = 442/538 (82%), Gaps = 2/538 (0%)

Query: 6   HSDDKPALLQPRRARQRNWLPSLVWLIPIVAAIVGLTLVAKILVERGPVVTVSFRSAEGL 65
           +++++  L  PR AR+R+W+PSLVW IPI+AA+VG+TLVA IL++RGP + ++F++AEGL
Sbjct: 3   NTEERTPLPSPRVARRRDWMPSLVWFIPIIAALVGITLVAHILMQRGPEIVLTFKTAEGL 62

Query: 66  EAGKTKVKYKDVEIGQVQSLKLAADRSHVLVGIQLNQDASGFNAEDTRFWVVRPRIAASG 125
           EAGKT VKYKDV+IG V+ L+L+ DRSHV V +QLN+DA  F A+DTR+WVVRPR+  SG
Sbjct: 63  EAGKTAVKYKDVQIGIVEGLRLSRDRSHVRVSVQLNKDAEAFTAKDTRYWVVRPRLDTSG 122

Query: 126 ISGLGTLLSGAYIGADAGASEETKKNFVGLEQPPIVTRDASGRQFVLHTDDLGSLDIGSP 185
           ISGLGTLLSGAYIG DAG SEET + F GLE PPIVTRDASGRQF+L  +D+GSLD+GSP
Sbjct: 123 ISGLGTLLSGAYIGVDAGTSEETVEEFAGLEVPPIVTRDASGRQFLLRANDIGSLDVGSP 182

Query: 186 IFYRRIKVGQVVAYDLDSDGRGVTLRIFVNAPYDKFVTQASRFWHASGFDMELNASGFKL 245
           +++RR+KVGQV AY+LD DG+GVTLR+FVNAPY+KFV   +RFWHASG DM++NASG  L
Sbjct: 183 VYFRRVKVGQVAAYELDGDGKGVTLRVFVNAPYEKFVEANTRFWHASGLDMQVNASGLTL 242

Query: 246 HTQALSTVVLGGIAFRDRD--EERVSPPAKEGSEYPLVEDESTAMKEPDGVPQTALLYFD 303
            TQ+L+T++LGGIAF   D      SP A E + + L EDE+ AMK+ DG  +T LL+F+
Sbjct: 243 RTQSLATILLGGIAFGTPDLGTPSASPAALENTAFALAEDEAAAMKQKDGSSETILLFFN 302

Query: 304 QSLRGLQPGATVDFRGVVLGEVKSIGVEYDKTRGEFRMPVLVQIYPDRLGRRFHEETGEQ 363
           QSLRGL PGA VDFRGVV+GEVKSIGVE+D+   EFRMPVLVQIYPDRL R+  +E+ E 
Sbjct: 303 QSLRGLSPGAPVDFRGVVIGEVKSIGVEFDRDEREFRMPVLVQIYPDRLRRQSTDESKES 362

Query: 364 RRSNAQLLRMLVKRGMRAQLRNGNLLTGQLYVAIDFFPKAKPVQIDPDKVPLELPTIPGS 423
           R +  Q L+ L+ +G+RAQLR GNLLTGQ+YVA+DFFPK  P+++D +K P ELPT+P S
Sbjct: 363 RYTQKQRLQFLINKGLRAQLRPGNLLTGQVYVALDFFPKLPPLKVDLNKQPFELPTVPNS 422

Query: 424 LDELQQQLSDIAGKLSKVPFDEIGRDLQTTLKTLNKTLTTAEQTAARINNDIAPEMQAAM 483
           LDELQ Q+ DIA KL+KVPFDEIG+DL+T L TLNKTL +AE+    +NND++PE+ AAM
Sbjct: 423 LDELQAQIKDIATKLNKVPFDEIGKDLRTALATLNKTLISAEELTRTLNNDVSPEITAAM 482

Query: 484 KDARKTLNAAERTLSDDAPLQSDIRQTMQELSKAAASIRILTDYLQQHPESLIRGKQE 541
           KDARKT+N+AE+TLS D+PLQ D+R+ M+E+++AA S+R+LTDYL++HPESL+RGK E
Sbjct: 483 KDARKTINSAEQTLSQDSPLQQDMREAMREITRAAGSVRVLTDYLERHPESLLRGKPE 540


>ref|YP_002944779.1| hypothetical protein Vapar_2893 [Variovorax paradoxus S110]
 gb|ACS19513.1| Mammalian cell entry related domain protein [Variovorax paradoxus
           S110]
          Length = 548

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/539 (65%), Positives = 436/539 (80%), Gaps = 1/539 (0%)

Query: 3   PPDHSDDKPALLQPRRARQRNWLPSLVWLIPIVAAIVGLTLVAKILVERGPVVTVSFRSA 62
           PP+     P L  PR  R+R WLPSL+WLIPIVAA+VG+ LV +IL++RGP + ++F +A
Sbjct: 8   PPNDPSAPPGLPAPRVVRRREWLPSLIWLIPIVAALVGVMLVVRILMQRGPEIVLTFNTA 67

Query: 63  EGLEAGKTKVKYKDVEIGQVQSLKLAADRSHVLVGIQLNQDASGFNAEDTRFWVVRPRIA 122
           EGLEA KT VKYKDV+IG VQSLKLA DRSHV V +QL+++A  F AED+RFWVVRPR+ 
Sbjct: 68  EGLEANKTAVKYKDVQIGTVQSLKLARDRSHVRVTVQLSKEAESFTAEDSRFWVVRPRLD 127

Query: 123 ASGISGLGTLLSGAYIGADAGASEETKKNFVGLEQPPIVTRDASGRQFVLHTDDLGSLDI 182
            SGISGLGTLLSGAYIGADAG S ET   F GLE PPIVTRDASG+QF+L   D+GSLD+
Sbjct: 128 TSGISGLGTLLSGAYIGADAGVSNETASEFKGLEVPPIVTRDASGQQFLLRATDVGSLDV 187

Query: 183 GSPIFYRRIKVGQVVAYDLDSDGRGVTLRIFVNAPYDKFVTQASRFWHASGFDMELNASG 242
           GSP+++RRIKVGQV AY+LD DGRGVTLRIFVNAPYDKFV   +RFW ASG D +L+ASG
Sbjct: 188 GSPVYFRRIKVGQVAAYELDGDGRGVTLRIFVNAPYDKFVGVNTRFWQASGIDAQLSASG 247

Query: 243 FKLHTQALSTVVLGGIAFRDRDEERVSPPAKEGSEYPLVEDESTAMKEPDGVPQTALLYF 302
           F L TQ+L+T++LGGIAF+  D+  + P AKE + + L +DE+ AMKEPDG PQT L+YF
Sbjct: 248 FTLRTQSLATILLGGIAFQAPDDA-MGPLAKENTAFTLAQDETAAMKEPDGPPQTLLMYF 306

Query: 303 DQSLRGLQPGATVDFRGVVLGEVKSIGVEYDKTRGEFRMPVLVQIYPDRLGRRFHEETGE 362
           +QSLRGL PGA VDFRGVV+GEVKSIGVE+D+   EFRMPVLVQ+YPDRL RR  E   E
Sbjct: 307 NQSLRGLTPGAPVDFRGVVIGEVKSIGVEFDRAEREFRMPVLVQVYPDRLRRRAGESGVE 366

Query: 363 QRRSNAQLLRMLVKRGMRAQLRNGNLLTGQLYVAIDFFPKAKPVQIDPDKVPLELPTIPG 422
            R +  + LR L ++G+RAQLRNGNLLTGQ+YVA+DFFPKA P +ID  K P+ELPTI  
Sbjct: 367 SRATQQERLRFLAEKGLRAQLRNGNLLTGQVYVALDFFPKAPPARIDVTKNPIELPTIAN 426

Query: 423 SLDELQQQLSDIAGKLSKVPFDEIGRDLQTTLKTLNKTLTTAEQTAARINNDIAPEMQAA 482
           SLDE+Q Q+ +IA KL+KVP+++I  DL+TTL +LNKTL + EQ   RIN D+ PE+ AA
Sbjct: 427 SLDEIQSQVQEIASKLNKVPYEQIAADLRTTLASLNKTLASTEQAVNRINTDLTPELAAA 486

Query: 483 MKDARKTLNAAERTLSDDAPLQSDIRQTMQELSKAAASIRILTDYLQQHPESLIRGKQE 541
           MKD RKT+N+AERTL+DD+PLQ D+RQT++EL++AA S+R+LTDYL++HPESL+RGK +
Sbjct: 487 MKDVRKTVNSAERTLADDSPLQQDMRQTLRELTRAAGSVRVLTDYLERHPESLLRGKPD 545


>ref|YP_004155432.1| mammalian cell entry related domain-containing protein [Variovorax
           paradoxus EPS]
 gb|ADU37321.1| Mammalian cell entry related domain protein [Variovorax paradoxus
           EPS]
          Length = 556

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/527 (67%), Positives = 437/527 (82%), Gaps = 9/527 (1%)

Query: 20  RQRNWLPSLVWLIPIVAAIVGLTLVAKILVERGPVVTVSFRSAEGLEAGKTKVKYKDVEI 79
           R+R+WLPSL+WLIPIVAA+VG+TLVA+IL+ERGP + ++F++AEGLEAGKT VKYKDV+I
Sbjct: 31  RRRDWLPSLIWLIPIVAALVGVTLVARILLERGPEIVLTFKTAEGLEAGKTAVKYKDVQI 90

Query: 80  GQVQSLKLAADRSHVLVGIQLNQDASGFNAEDTRFWVVRPRIAASGISGLGTLLSGAYIG 139
           G VQSL+LA DRSHV V +QLN+DA  F ++D+RFWVVRPR+  SGISGLGTLLSGAYIG
Sbjct: 91  GLVQSLRLARDRSHVRVLVQLNKDAESFTSDDSRFWVVRPRLDTSGISGLGTLLSGAYIG 150

Query: 140 ADAGASEETKKNFVGLEQPPIVTRDASGRQFVLHTDDLGSLDIGSPIFYRRIKVGQVVAY 199
           ADAG S+ET   F GLE PPIVTRD SG+QF+L   D+GSLD+GSP+++RRIKVGQV AY
Sbjct: 151 ADAGVSKETAGEFKGLEAPPIVTRDDSGQQFLLRATDIGSLDVGSPVYFRRIKVGQVAAY 210

Query: 200 DLDSDGRGVTLRIFVNAPYDKFVTQASRFWHASGFDMELNASGFKLHTQALSTVVLGGIA 259
           +LD DGRGVTLR+FVNAPYDKFV   +RFW ASG D +L+ASGF L TQ+L+T++LGGIA
Sbjct: 211 ELDGDGRGVTLRVFVNAPYDKFVGVNTRFWQASGIDAQLSASGFTLRTQSLATILLGGIA 270

Query: 260 FRDRDEERVSPPAKEGSEYPLVEDESTAMKEPDGVPQTALLYFDQSLRGLQPGATVDFRG 319
           F+  D+  + P AKE + + L +DE  AMKEPDG  QT L+YF+QSLRGL PGA VDFRG
Sbjct: 271 FQAPDDA-MGPLAKENTAFMLAQDEVAAMKEPDGPSQTLLMYFNQSLRGLVPGAPVDFRG 329

Query: 320 VVLGEVKSIGVEYDKTRGEFRMPVLVQIYPDRLGRRFHEETG-----EQRRSNAQLLRML 374
           VV+GEVKSIGVE+D+   EFRMPVLVQIYPDRL RR   ETG     E R +  + LR L
Sbjct: 330 VVIGEVKSIGVEFDRAEREFRMPVLVQIYPDRLRRR---ETGQPQGTESRATQQERLRFL 386

Query: 375 VKRGMRAQLRNGNLLTGQLYVAIDFFPKAKPVQIDPDKVPLELPTIPGSLDELQQQLSDI 434
            ++G+RAQLRNGNLLTG +YVA+DFFPKA PVQID  K P+ELPT+  SLDE+Q Q+ +I
Sbjct: 387 AEKGLRAQLRNGNLLTGSVYVALDFFPKAPPVQIDLAKNPIELPTVANSLDEIQSQVQEI 446

Query: 435 AGKLSKVPFDEIGRDLQTTLKTLNKTLTTAEQTAARINNDIAPEMQAAMKDARKTLNAAE 494
           A KL+KVP+++I  DL+TTL TLNKTLT+AEQT  RINND+ PE+ AAMKD RKT+N AE
Sbjct: 447 ASKLNKVPYEQIAADLRTTLATLNKTLTSAEQTVTRINNDVTPELAAAMKDVRKTVNTAE 506

Query: 495 RTLSDDAPLQSDIRQTMQELSKAAASIRILTDYLQQHPESLIRGKQE 541
           RTL+DD+PLQ D+RQT++EL++AA S+R+LTDYL++HPESL+RGK +
Sbjct: 507 RTLADDSPLQQDMRQTLRELTRAAGSVRVLTDYLERHPESLLRGKPD 553