BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4297.p (210 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776815.1| hypothetical protein Hsero_3427 [Herbaspiril... 280 8e-74 ref|YP_004752914.1| hypothetical protein CFU_2264 [Collimonas fu... 164 8e-39 ref|YP_001352745.1| hypothetical protein mma_1055 [Janthinobacte... 132 5e-29 ref|YP_004155431.1| hypothetical protein Varpa_3133 [Variovorax ... 131 6e-29 ref|YP_002944778.1| hypothetical protein Vapar_2892 [Variovorax ... 127 9e-28 >ref|YP_003776815.1| hypothetical protein Hsero_3427 [Herbaspirillum seropedicae SmR1] gb|ADJ64907.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 212 Score = 280 bits (717), Expect = 8e-74, Method: Composition-based stats. Identities = 183/212 (86%), Positives = 192/212 (90%), Gaps = 2/212 (0%) Query: 1 MMQDKTSFSLKTLAAAALAAALLAACGSSPPTQFYTLALPAD-GAAARTASQGPQTFIEV 59 MMQ S SLKTL AAALAA LL ACGS+PPTQFYTLA P D GA AR+A+QGPQTFIEV Sbjct: 1 MMQAMKSLSLKTLGAAALAAGLLTACGSTPPTQFYTLAAPTDAGATARSAAQGPQTFIEV 60 Query: 60 MPVSVPERLARPQLVVRSDATRVEVLEQDRWSSPFNNELRDALSAGVAARLGAIDVSRGG 119 MPV+VPERLARPQLVVRSDATRV+VLEQ+RWSSPFNNELRDAL+AGVAARLGAIDVSRGG Sbjct: 61 MPVAVPERLARPQLVVRSDATRVDVLEQERWSSPFNNELRDALAAGVAARLGAIDVSRGG 120 Query: 120 RPADQASYRINVELRDFDAARNGQVQASFGWTITRSDDRRGTACRLTVVERVGGGANADV 179 RPADQ SYRINVELRDFDA RNGQVQASFGWTITRSDDRR ACRLTVVERV G ANADV Sbjct: 121 RPADQPSYRINVELRDFDAMRNGQVQASFGWTITRSDDRRSAACRLTVVERVAGSANADV 180 Query: 180 VAATQKAVGQAVQEIAGNVRSLQAGQ-GQCSS 210 VAATQKAVGQAVQ IA NVR+LQAGQ GQCS+ Sbjct: 181 VAATQKAVGQAVQAIADNVRALQAGQGGQCSA 212 >ref|YP_004752914.1| hypothetical protein CFU_2264 [Collimonas fungivorans Ter331] gb|AEK62091.1| hypothetical protein CFU_2264 [Collimonas fungivorans Ter331] Length = 209 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 107/199 (53%), Positives = 134/199 (67%), Gaps = 9/199 (4%) Query: 9 SLKTLAAAALAAALLAACGSSPPTQFYTLALPADGAAARTASQGPQTFIEVMPVSVPERL 68 S + A LLA C S+P T FYTLA P AA A Q + +I+V PVS+PERL Sbjct: 3 STTRICTIAAFTVLLAGCASAP-THFYTLATPT---AAAPAIQNSKLYIDVAPVSLPERL 58 Query: 69 ARPQLVVRS----DATRVEVLEQDRWSSPFNNELRDALSAGVAARLGAIDVSRGGRPADQ 124 ARPQLVVRS +TRV++LEQ+RWSSPFNNELRDAL++G+A RLGAIDVSR GRP DQ Sbjct: 59 ARPQLVVRSAGSASSTRVDILEQERWSSPFNNELRDALASGIANRLGAIDVSRSGRPTDQ 118 Query: 125 ASYRINVELRDFDAARNGQVQASFGWTITRSDDRRGTACRLTVVERVGGGANADVVAATQ 184 YRI VELR+FDA +VQA++GWTI+RSD R +AC+L+V V G + +V Q Sbjct: 119 PVYRIAVELREFDAVPGDKVQATYGWTISRSDSGRSSACQLSVAAAVNPGIDG-LVLGVQ 177 Query: 185 KAVGQAVQEIAGNVRSLQA 203 + V IA N+ + +A Sbjct: 178 RTVADVASGIAANITAFKA 196 >ref|YP_001352745.1| hypothetical protein mma_1055 [Janthinobacterium sp. Marseille] gb|ABR88488.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 220 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 86/183 (46%), Positives = 113/183 (61%), Gaps = 5/183 (2%) Query: 22 LLAACGSSPPTQFYTLALPADGAAARTASQGPQTFIEVMPVSVPERLARPQLVVRSDA-- 79 LLAAC ++ ++YTL P A AS P FIE+ PV+VPERLARPQ+V+ A Sbjct: 30 LLAACANTSNARYYTLTGPTASALTPPASATP-LFIELAPVAVPERLARPQMVLSKPAGQ 88 Query: 80 -TRVEVLEQDRWSSPFNNELRDALSAGVAARLGAIDVSRGGRPADQASYRINVELRDFDA 138 +E+LEQ RW+S F NE+RDALSAG+ RLGA+DVS+ GR QA +RI V+LR FDA Sbjct: 89 SAELELLEQYRWTSSFENEMRDALSAGITNRLGAVDVSKSGRSQGQAVWRIAVQLRQFDA 148 Query: 139 ARNGQVQASFGWTITRSDDRRGTACRLTVVERVGGGANADVVAATQKAVGQAVQEIAGNV 198 N +V A+F WT RSD C+ E VG G +A + Q+ +A Q IA ++ Sbjct: 149 IENTRVDAAFSWTARRSDTGSNAVCQWAGSEAVGSGMDA-LAQGAQRITDRAAQMIAQHL 207 Query: 199 RSL 201 +L Sbjct: 208 ATL 210 >ref|YP_004155431.1| hypothetical protein Varpa_3133 [Variovorax paradoxus EPS] gb|ADU37320.1| protein of unknown function DUF330 [Variovorax paradoxus EPS] Length = 213 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 79/153 (51%), Positives = 104/153 (67%), Gaps = 4/153 (2%) Query: 29 SPPTQFYTLALPADGAAARTASQGPQT--FIEVMPVSVPERLARPQLVVRS--DATRVEV 84 S P ++YTLA P A A ++ G +IE+ PVSVPER ARPQ+VVR + +VEV Sbjct: 27 SKPDKYYTLASPVAAADAAPSTLGSPAPLYIELAPVSVPERFARPQMVVRQPGGSVQVEV 86 Query: 85 LEQDRWSSPFNNELRDALSAGVAARLGAIDVSRGGRPADQASYRINVELRDFDAARNGQV 144 LEQ RW+S F NELRDALS ++ARLGA+DV++GGR Q +R+ V+L+ F+A G+V Sbjct: 87 LEQHRWASSFENELRDALSGNISARLGALDVTKGGRQTSQPVWRVAVQLQQFNAVDGGRV 146 Query: 145 QASFGWTITRSDDRRGTACRLTVVERVGGGANA 177 ASF WT+ RSD+ R C+L V E V GG +A Sbjct: 147 DASFSWTLRRSDEARTVVCQLNVGEAVAGGMDA 179 >ref|YP_002944778.1| hypothetical protein Vapar_2892 [Variovorax paradoxus S110] gb|ACS19512.1| protein of unknown function DUF330 [Variovorax paradoxus S110] Length = 210 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 80/160 (50%), Positives = 108/160 (67%), Gaps = 5/160 (3%) Query: 22 LLAACGSSPPTQFYTLALPADGAAARTASQGPQT--FIEVMPVSVPERLARPQLVV--RS 77 +LA C +S P +YTLA A A ++ G +IE+ PV+VPERLARPQ+VV Sbjct: 18 VLAGC-ASKPDNYYTLASAVPAAEAAPSTLGTAAPLYIELAPVAVPERLARPQMVVGRPG 76 Query: 78 DATRVEVLEQDRWSSPFNNELRDALSAGVAARLGAIDVSRGGRPADQASYRINVELRDFD 137 + +V+VLEQ RW + F NEL+DAL++G+AARLGA+DVS+GGRP+ Q +RI V++R FD Sbjct: 77 GSVQVDVLEQHRWVASFENELQDALASGIAARLGALDVSKGGRPSAQPVWRIAVQVRRFD 136 Query: 138 AARNGQVQASFGWTITRSDDRRGTACRLTVVERVGGGANA 177 A G+V A F WT+ RSD+ R C+L E V GG +A Sbjct: 137 AVDGGRVDAGFNWTLRRSDEPRTVVCQLDAGEAVAGGIDA 176