BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4296.p         (73 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003527251.1| hypothetical protein Nhal_1740 [Nitrosococcu...    92   2e-17
ref|ZP_08772636.1| hypothetical protein ThimaDRAFT_4375 [Thiocap...    88   6e-16
ref|YP_001232911.1| hypothetical protein Gura_4195 [Geobacter ur...    87   8e-16
ref|YP_002952810.1| hypothetical protein DMR_14330 [Desulfovibri...    87   9e-16
ref|ZP_08484021.1| hypothetical protein MetalDRAFT_0746 [Methylo...    84   5e-15

>ref|YP_003527251.1| hypothetical protein Nhal_1740 [Nitrosococcus halophilus Nc4]
 gb|ADE14864.1| conserved hypothetical protein [Nitrosococcus halophilus Nc4]
          Length = 73

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 56/73 (76%)

Query: 1  MFYRDHAPPHFHVRYAEYKAVIDVRKLVLLEGQLPRRALQLVLDWTELHQAELLEDWTLC 60
          MF+ DHAPPHFH  Y EY+A+ID+R L ++ G LPRRAL LVL+W  LH+ EL+E+W LC
Sbjct: 1  MFWADHAPPHFHALYGEYEALIDIRTLAVMRGTLPRRALALVLEWASLHREELMENWKLC 60

Query: 61 QDMQAPKPIAPLE 73
          + +Q PK I PL+
Sbjct: 61 ESLQQPKKIDPLD 73


>ref|ZP_08772636.1| hypothetical protein ThimaDRAFT_4375 [Thiocapsa marina 5811]
 gb|EGV16281.1| hypothetical protein ThimaDRAFT_4375 [Thiocapsa marina 5811]
          Length = 86

 Score = 87.8 bits (216), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/73 (57%), Positives = 57/73 (78%)

Query: 1  MFYRDHAPPHFHVRYAEYKAVIDVRKLVLLEGQLPRRALQLVLDWTELHQAELLEDWTLC 60
          MF+R+HAPPHFH  YAE++A+ID+R L ++ G+LP+RAL L ++W   H+ EL+EDW LC
Sbjct: 14 MFWREHAPPHFHALYAEHEALIDIRTLEVIGGRLPKRALALTIEWAVEHREELMEDWKLC 73

Query: 61 QDMQAPKPIAPLE 73
          Q  Q P+ IAPLE
Sbjct: 74 QLKQLPRRIAPLE 86


>ref|YP_001232911.1| hypothetical protein Gura_4195 [Geobacter uraniireducens Rf4]
 gb|ABQ28338.1| hypothetical protein Gura_4195 [Geobacter uraniireducens Rf4]
          Length = 86

 Score = 87.0 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 53/72 (73%)

Query: 1  MFYRDHAPPHFHVRYAEYKAVIDVRKLVLLEGQLPRRALQLVLDWTELHQAELLEDWTLC 60
          M +R+HAPPHFH  Y EY+ +ID+R L +  G +P+RAL LVL+W + H+AEL+EDW LC
Sbjct: 14 MHWREHAPPHFHALYGEYEILIDIRTLEIFSGNIPKRALVLVLEWAQEHRAELMEDWQLC 73

Query: 61 QDMQAPKPIAPL 72
          +  Q PK I PL
Sbjct: 74 EQNQTPKKIQPL 85


>ref|YP_002952810.1| hypothetical protein DMR_14330 [Desulfovibrio magneticus RS-1]
 dbj|BAH74924.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 86

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 53/73 (72%)

Query: 1  MFYRDHAPPHFHVRYAEYKAVIDVRKLVLLEGQLPRRALQLVLDWTELHQAELLEDWTLC 60
          M++R+H  PHFH +Y E+ A  D+  L +L G+LP RA  +VL+W   H+AEL+E+W LC
Sbjct: 14 MYWREHGRPHFHAKYGEHGATFDIETLAILTGELPGRARLMVLEWAFEHRAELMENWRLC 73

Query: 61 QDMQAPKPIAPLE 73
          Q+  +PKPIAPLE
Sbjct: 74 QEWASPKPIAPLE 86


>ref|ZP_08484021.1| hypothetical protein MetalDRAFT_0746 [Methylomicrobium album BG8]
 gb|EGL05191.1| hypothetical protein MetalDRAFT_0746 [Methylomicrobium album BG8]
          Length = 86

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/73 (50%), Positives = 51/73 (69%)

Query: 1  MFYRDHAPPHFHVRYAEYKAVIDVRKLVLLEGQLPRRALQLVLDWTELHQAELLEDWTLC 60
          MF+ DHAPPHFH  Y EY+ ++ +  + +++G  P+R   +VL+WT LHQ ELL DW LC
Sbjct: 14 MFFDDHAPPHFHAEYGEYELIVAISPIKIIKGDAPKRVRSMVLEWTALHQEELLLDWELC 73

Query: 61 QDMQAPKPIAPLE 73
          ++MQ P  I PLE
Sbjct: 74 KNMQPPVAIEPLE 86