BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4295.p         (84 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776814.1| hypothetical protein Hsero_3426 [Herbaspiril...   141   3e-32
ref|YP_004845935.1| hypothetical protein NH8B_0689 [Pseudogulben...   110   1e-22
ref|YP_001220356.1| hypothetical protein Acry_3622 [Acidiphilium...    78   6e-13
ref|YP_003527252.1| hypothetical protein Nhal_1741 [Nitrosococcu...    77   1e-12
ref|YP_002219133.1| hypothetical protein Lferr_0674 [Acidithioba...    74   9e-12

>ref|YP_003776814.1| hypothetical protein Hsero_3426 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64906.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 84

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/84 (82%), Positives = 77/84 (91%)

Query: 1  MEWDVVEVKLSGDYALQVRFRDGVEGPVRFLPSFFRGVFAPLRDQRQFSRVRLVDGVVTW 60
          M+WDVVEVKL G+YALQVRFRDGVEG V FLPSFFRGVFA L+DQ QF++VRL++GVVTW
Sbjct: 1  MQWDVVEVKLCGEYALQVRFRDGVEGRVSFLPSFFRGVFASLKDQAQFNQVRLIEGVVTW 60

Query: 61 PGELDLAPDAMHDAIKRDGQWLLA 84
          PGELDLAPDAMHD IKR+G WLLA
Sbjct: 61 PGELDLAPDAMHDEIKRNGHWLLA 84


>ref|YP_004845935.1| hypothetical protein NH8B_0689 [Pseudogulbenkiania sp. NH8B]
 dbj|BAK75521.1| protein of unknown function [Pseudogulbenkiania sp. NH8B]
          Length = 95

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/73 (67%), Positives = 59/73 (80%)

Query: 1  MEWDVVEVKLSGDYALQVRFRDGVEGPVRFLPSFFRGVFAPLRDQRQFSRVRLVDGVVTW 60
          M WDV EV ++ ++ L VRF+DGVEG V+FLP+FFRGVF+ L D   F +V +VDGVVTW
Sbjct: 1  MGWDVTEVSVTNEFTLLVRFKDGVEGAVKFLPTFFRGVFSHLHDPALFQQVSVVDGVVTW 60

Query: 61 PGELDLAPDAMHD 73
          PGELDLAPDAMHD
Sbjct: 61 PGELDLAPDAMHD 73


>ref|YP_001220356.1| hypothetical protein Acry_3622 [Acidiphilium cryptum JF-5]
 gb|ABQ29214.1| hypothetical protein Acry_3622 [Acidiphilium cryptum JF-5]
          Length = 84

 Score = 77.8 bits (190), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 3/74 (4%)

Query: 14 YALQVRFRDGVEGPV---RFLPSFFRGVFAPLRDQRQFSRVRLVDGVVTWPGELDLAPDA 70
          Y L VRF DG  G V     + +   GVFA LRD  +F+RV ++ GVVTWPGE+DLAPDA
Sbjct: 10 YRLAVRFHDGTAGTVDMAAMITAPTAGVFARLRDPAEFARVHVLYGVVTWPGEIDLAPDA 69

Query: 71 MHDAIKRDGQWLLA 84
          MHDA+   G+W+LA
Sbjct: 70 MHDALAATGEWVLA 83


>ref|YP_003527252.1| hypothetical protein Nhal_1741 [Nitrosococcus halophilus Nc4]
 gb|ADE14865.1| conserved hypothetical protein [Nitrosococcus halophilus Nc4]
          Length = 104

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 55/84 (65%), Gaps = 3/84 (3%)

Query: 3   WDVVEVKLSGDYALQVRFRDGVEGPVRFLPSFFR---GVFAPLRDQRQFSRVRLVDGVVT 59
           W V++V     Y L+VRF DG EG V       R   GVF  LRD+  F++V +  G VT
Sbjct: 21  WRVIQVTPLSGYCLRVRFVDGTEGEVDMTGLVNRVQAGVFEKLRDRALFAQVTVSLGAVT 80

Query: 60  WPGELDLAPDAMHDAIKRDGQWLL 83
           WPG++DLAPDAM+D I+++G+W+L
Sbjct: 81  WPGDIDLAPDAMYDEIRKNGKWVL 104


>ref|YP_002219133.1| hypothetical protein Lferr_0674 [Acidithiobacillus ferrooxidans
          ATCC 53993]
 gb|ACH82926.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans
          ATCC 53993]
          Length = 95

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/85 (50%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 3  WDVVEVKLSGDYALQVRFRDGVEGPV---RFLPSFFRGVFAPLRDQRQFSRVRLVDGVVT 59
          W V  V+    Y L VRF DG EG V     + S   GVF  L +   FS V L  GVVT
Sbjct: 10 WRVTSVRALDGYRLHVRFVDGTEGEVWMDALIHSPGAGVFGCLSESTVFSAVGLEHGVVT 69

Query: 60 WPGELDLAPDAMHDAIKRDGQWLLA 84
          WP E+DLAPDAM+DAIK  G+W+L+
Sbjct: 70 WPEEIDLAPDAMYDAIKAHGKWVLS 94