BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4294.p (500 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum s... 828 0.0 ref|YP_004752117.1| ATP-dependent RNA helicase [Collimonas fungi... 699 0.0 ref|ZP_08272595.1| ATP-dependent RNA helicase [Oxalobacteraceae ... 684 0.0 ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacteriu... 676 0.0 ref|YP_001100581.1| ATP-dependent RNA helicase [Herminiimonas ar... 672 0.0 >ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] gb|ADJ64905.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 510 Score = 828 bits (2139), Expect = 0.0, Method: Composition-based stats. Identities = 487/511 (95%), Positives = 490/511 (95%), Gaps = 12/511 (2%) Query: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL Sbjct: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 Query: 61 HQLADLPQAPQAARTPNQERQATRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 HQLADLP APQAARTPNQERQA+RARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG Sbjct: 61 HQLADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 Query: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA Sbjct: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 Query: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPATIQIASSSTRHE 240 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNP TIQIASSSTRHE Sbjct: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240 Query: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG Sbjct: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300 Query: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG Sbjct: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360 Query: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKSAAPRSPRKPGGWRPGD 420 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKSAAPRSPRKPGGWRPGD Sbjct: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKSAAPRSPRKPGGWRPGD 420 Query: 421 GRSNSGPRFGAGNREGGGHREGGFGGNREGGFGG-----------NREGRSFGGAKPGNG 469 GRSN+GPR+GAGNREGGGHREGGFGGNREGG NREGRSFGGAKPGNG Sbjct: 421 GRSNNGPRYGAGNREGGGHREGGFGGNREGGHREGGFGGNREGGYNREGRSFGGAKPGNG 480 Query: 470 PRREGGAGGGYKGNNGGGFRADGPRRSYGDR 500 PRREGG GGG NGGGFRADGPRRSYGDR Sbjct: 481 PRREGGGGGG-YKGNGGGFRADGPRRSYGDR 510 >ref|YP_004752117.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331] gb|AEK61294.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331] Length = 468 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 390/503 (77%), Positives = 428/503 (85%), Gaps = 38/503 (7%) Query: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 MTFE+LGL+ S+IKALTEAGYT PT VQE+AIPAAI G+DLLVSSQTGSGKTAAFMLP+L Sbjct: 1 MTFESLGLHTSVIKALTEAGYTKPTGVQEQAIPAAIEGRDLLVSSQTGSGKTAAFMLPAL 60 Query: 61 HQLADLPQ-APQAA-RTPNQERQATRARGERPRYQPAQPKMLVLTPTRELALQVTTATDK 118 H+ A Q AP AA +TPNQE QA+R+RGERPR++PAQPKMLVLTPTRELALQVTTATDK Sbjct: 61 HKFASEQQVAPAAAGKTPNQEMQASRSRGERPRFKPAQPKMLVLTPTRELALQVTTATDK 120 Query: 119 YGAYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLD 178 YG++M+RV+ +SILGGMPYPKQMQLL++NPEILVATPGRLIDHMESGKIDFSQLQILVLD Sbjct: 121 YGSHMKRVKAISILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLD 180 Query: 179 EADRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPATIQIASSSTR 238 EADRMLDMGFIDDIEKIV ATP +RQTMLFSATLDGVVGNMAKRIT NP IQIA S+T+ Sbjct: 181 EADRMLDMGFIDDIEKIVDATPESRQTMLFSATLDGVVGNMAKRITKNPMIIQIAGSATK 240 Query: 239 HENIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAAL 298 HENI Q+VHFVDDLSHKNRLLDHLLRD ++DQAV+FTATKRDADTIADRLNIAGFAAAAL Sbjct: 241 HENIQQKVHFVDDLSHKNRLLDHLLRDVTMDQAVVFTATKRDADTIADRLNIAGFAAAAL 300 Query: 299 HGDMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGR 358 HGDMHQGARNRTL+SLRRGQVR+LVATDVAARGIDVP ITHVFNYDLPKF EDYVHRIGR Sbjct: 301 HGDMHQGARNRTLDSLRRGQVRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 360 Query: 359 TGRAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKSA-APRSPRKPGGWR 417 TGRAGRNGVA+SLVNHAEG+ VKRIERFTKQ IPVDVVEGFEPK+SA APRS KPGGW+ Sbjct: 361 TGRAGRNGVAVSLVNHAEGVNVKRIERFTKQLIPVDVVEGFEPKRSASAPRSNHKPGGWK 420 Query: 418 PGDGRSNSGPRFGAGNREGGGHREGGFGGNREGGFGGNREGRSFGGAKPGNGPRREGGAG 477 PGD R GG + G GR+F +KPG PR++ G G Sbjct: 421 PGDNR-------------GGPAKPG---------------GRTF--SKPG-APRKD-GGG 448 Query: 478 GGYKGNNGGGFRADGPRRSYGDR 500 GGYKGN G RRS+GDR Sbjct: 449 GGYKGNRSND---SGARRSFGDR 468 >ref|ZP_08272595.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33948.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] Length = 468 Score = 684 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 362/459 (78%), Positives = 404/459 (88%), Gaps = 5/459 (1%) Query: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 MTFEALGL+ S+IKALTE+GY PT VQE+AIPAAI G+DLLVSSQTGSGKTAAFMLP+L Sbjct: 1 MTFEALGLHTSVIKALTESGYIKPTSVQEQAIPAAIEGRDLLVSSQTGSGKTAAFMLPAL 60 Query: 61 HQLADLP--QAPQAARTPNQERQATRARGERPRYQPAQPKMLVLTPTRELALQVTTATDK 118 H+ A Q +++TPNQE+Q+ ARGERPR++ AQPKMLVLTPTRELALQVTTATDK Sbjct: 61 HKFATAAELQLADSSKTPNQEKQSALARGERPRFKAAQPKMLVLTPTRELALQVTTATDK 120 Query: 119 YGAYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLD 178 YG+ MRR++ VSILGGMPYPKQMQLL++NPEILVATPGRLIDHMESGKIDFSQL+ILVLD Sbjct: 121 YGSQMRRIKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLEILVLD 180 Query: 179 EADRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPATIQIASSSTR 238 EADRMLDMGFIDDIEKIVAATP +RQTMLFSATLDGVVGNMAKRIT NP IQIA S+T+ Sbjct: 181 EADRMLDMGFIDDIEKIVAATPESRQTMLFSATLDGVVGNMAKRITKNPMIIQIAGSATK 240 Query: 239 HENIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAAL 298 HENI QRVHFVDDLSHKNRLLDHLLRD ++DQAV+FTATKRDADTIADRLNIAGFAAAAL Sbjct: 241 HENISQRVHFVDDLSHKNRLLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAAL 300 Query: 299 HGDMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGR 358 HGDMHQGARNRTL+ +RRGQVR+LVATDVAARGIDVP ITHVFNYDLPKF EDYVHRIGR Sbjct: 301 HGDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 360 Query: 359 TGRAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKSA-APRSPRKPGGWR 417 TGRAGRNG+A+SLVNHAEG+ VKRIERFTKQ IPV+V+EGFEPKK+A APRS +KPGGW+ Sbjct: 361 TGRAGRNGIAVSLVNHAEGINVKRIERFTKQLIPVEVIEGFEPKKTASAPRSGQKPGGWK 420 Query: 418 PGDGRSNSGPRFGAGNREGGGHREGG--FGGNREGGFGG 454 PGD RS + P ++ ++G G R G GG Sbjct: 421 PGDNRSAAKPGQRTFSKPSAPRKDGSSFSKGPRTGDAGG 459 >ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] gb|ABR89515.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 466 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 349/427 (81%), Positives = 389/427 (91%), Gaps = 1/427 (0%) Query: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 MTFE+LGL+ SIIKALTE+GYT+PT VQ +AIPAAI G+D++VSSQTGSGKTAAFMLP+L Sbjct: 1 MTFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPAL 60 Query: 61 HQLADLPQAPQAARTPNQERQATRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 H+ A PQ +TPNQE Q+ R+RG+RPR++PAQPKMLVLTPTRELALQVTT+TDKYG Sbjct: 61 HKFASEGDQPQTGKTPNQEAQSARSRGDRPRFKPAQPKMLVLTPTRELALQVTTSTDKYG 120 Query: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 A+M+RV+ VSILGGMPYPKQMQLL++NPEILVATPGRLIDHMESGKIDFSQLQILVLDEA Sbjct: 121 AFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 Query: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPATIQIASSSTRHE 240 DRMLDMGFIDDIEKIVAATP RQTMLFSATLDG+VGNMAKRIT + IQIA S+T+HE Sbjct: 181 DRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGMVGNMAKRITKDALIIQIAGSATKHE 240 Query: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300 NI Q VHFVDDLSHKNR+LDHLLRD ++DQAV+FTATKRDADTIADRLNIAGFAAAALHG Sbjct: 241 NIKQCVHFVDDLSHKNRMLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHG 300 Query: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360 DMHQGARNRTL+ LRRGQ+R+LVATDVAARGIDVPGITHV NYDLPKF EDYVHRIGRTG Sbjct: 301 DMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPGITHVVNYDLPKFPEDYVHRIGRTG 360 Query: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKSA-APRSPRKPGGWRPG 419 RAGRNG+A+SLVNHAE M VKRIERF KQ IPV+V+EGFEPK+SA APRS KPGGW+PG Sbjct: 361 RAGRNGIAVSLVNHAESMNVKRIERFIKQLIPVEVIEGFEPKRSASAPRSNHKPGGWKPG 420 Query: 420 DGRSNSG 426 D R N+ Sbjct: 421 DNRGNTA 427 >ref|YP_001100581.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] emb|CAL62459.1| Putative ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 468 Score = 672 bits (1735), Expect = 0.0, Method: Composition-based stats. Identities = 357/466 (76%), Positives = 399/466 (85%), Gaps = 4/466 (0%) Query: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 MTFE+LGL+ SIIKALTE+GYT+PT VQ +AIPAAI G+D++VSSQTGSGKTAAFMLP+L Sbjct: 1 MTFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPAL 60 Query: 61 HQLA--DLPQAPQAARTPNQERQATRARGERPRYQPAQPKMLVLTPTRELALQVTTATDK 118 H+ A Q P+ RTPNQE Q+ R+RG+RPR++ AQPKMLVLTPTRELALQVTT+TDK Sbjct: 61 HKFAVQSEQQQPEGGRTPNQEAQSARSRGDRPRFKAAQPKMLVLTPTRELALQVTTSTDK 120 Query: 119 YGAYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLD 178 YGA+M+RV+ VSILGGMPYPKQMQLL++NPEILVATPGRLIDHMESGKIDFS+LQILVLD Sbjct: 121 YGAFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSELQILVLD 180 Query: 179 EADRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPATIQIASSSTR 238 EADRMLDMGFIDDIEKIVAATP RQTMLFSATLDG VG MAKRIT +P IQIA S+T+ Sbjct: 181 EADRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGTVGTMAKRITKDPLVIQIAGSATK 240 Query: 239 HENIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAAL 298 HENI Q VHFVDDLSHKNRLLDHLLRD ++DQAV+FTATKRDADTIADRLNIAGFAAAAL Sbjct: 241 HENIKQGVHFVDDLSHKNRLLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAAL 300 Query: 299 HGDMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGR 358 HGDMHQGARNRTL+ LRRGQ+R+LVATDVAARGIDVP ITHVFNYDLPKF EDYVHRIGR Sbjct: 301 HGDMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 360 Query: 359 TGRAGRNGVAISLVNHAEGMQVKRIERFTKQTIPVDVVEGFEPKKSA-APRSPRKPGGWR 417 TGRAGRNG+A+SLVNHAEGM VKRIERF KQ IPV V+EGFEPK++A APRS KPGGW+ Sbjct: 361 TGRAGRNGIAVSLVNHAEGMNVKRIERFIKQLIPVSVIEGFEPKRTASAPRSNHKPGGWK 420 Query: 418 PGDGRSNSG-PRFGAGNREGGGHREGGFGGNREGGFGGNREGRSFG 462 PGD R N+ P ++ EGG+ G R FG Sbjct: 421 PGDNRGNAAKPGQRTFSKPNATRNEGGYNKGPRTSDAGGATRRPFG 466