BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4291.p (360 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776810.1| ABC transporter permease [Herbaspirillum ser... 615 e-174 emb|CAL62456.2| ABC transporter, permease component, putative ni... 545 e-153 ref|YP_001352895.1| ABC-type uncharacterized transport system, p... 541 e-152 ref|YP_001100578.1| oligopeptide ABC transporter membrane protei... 522 e-146 ref|YP_296336.1| binding-protein dependent transport system inne... 464 e-128 >ref|YP_003776810.1| ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64902.1| ABC-type uncharacterized transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 356 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 347/356 (97%), Positives = 351/356 (98%) Query: 5 MNIWSYILKRVLLMIPTLFGVVAITFAVIQFVPGGPVEQAMLEMKGRGGGGEASGGGAAS 64 MNIWSYI+KRVLLMIPTLFGVVAITFAVIQFVPGGPVEQAMLEMKGRGGGGEASGGGAAS Sbjct: 1 MNIWSYIVKRVLLMIPTLFGVVAITFAVIQFVPGGPVEQAMLEMKGRGGGGEASGGGAAS 60 Query: 65 GASAYRGRQGIDEQRIAEIKQLYGFDKPPVERFWTMLKGFLTFDLGKSFYHHGDVWTLVK 124 GASAYRGRQGIDEQRIAEIKQLYGFDKPPVERFWTMLKGFLTFDLGKSFYHHGDVWTLVK Sbjct: 61 GASAYRGRQGIDEQRIAEIKQLYGFDKPPVERFWTMLKGFLTFDLGKSFYHHGDVWTLVK 120 Query: 125 SKFPVSISIGLWTFLLSYLISVPLGIAKAVREGSRFDTATTGLVLVGYSIPGFVLGVFLL 184 SK PVSISIGLWTFLLSYLISVPLGIAKAVREG+RFDTATTGLVLVGYSIPGFVLGVFLL Sbjct: 121 SKLPVSISIGLWTFLLSYLISVPLGIAKAVREGTRFDTATTGLVLVGYSIPGFVLGVFLL 180 Query: 185 VLFAGGSFVQWFPLRGLTSDNWASLSFTGKITDYLWHITLPVFASVIGAFAVITMLTRNT 244 VLFAGGSFVQWFPLRGLTSDNW SLS GKITDYLWHITLPV ASVIG+FAVITMLTRNT Sbjct: 181 VLFAGGSFVQWFPLRGLTSDNWESLSLMGKITDYLWHITLPVTASVIGSFAVITMLTRNT 240 Query: 245 FLEEIRKQYVLTARAKGLSERKVLYKHVFRNALIPLVTGFPSAFIASFFAGSLLIETLFS 304 FLEEIRKQYVLTARAKGLSER+VLYKHVFRNALIPLVTGFPSAFIASFFAGSLLIETLFS Sbjct: 241 FLEEIRKQYVLTARAKGLSERRVLYKHVFRNALIPLVTGFPSAFIASFFAGSLLIETLFS 300 Query: 305 LDGMGLLAYESAIRRDYPVVMGTLYLFTLIGLVVKLVGDLCYVWADPRVQFESLAK 360 LDGMGLLAYESAIRRDYPVVMGTLYLFTLIGLVVKLVGDLCYVWADPRVQFESLAK Sbjct: 301 LDGMGLLAYESAIRRDYPVVMGTLYLFTLIGLVVKLVGDLCYVWADPRVQFESLAK 356 >emb|CAL62456.2| ABC transporter, permease component, putative nickel-transporting ATPase [Herminiimonas arsenicoxydans] Length = 352 Score = 545 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 285/356 (80%), Positives = 314/356 (88%), Gaps = 4/356 (1%) Query: 5 MNIWSYILKRVLLMIPTLFGVVAITFAVIQFVPGGPVEQAMLEMKGRGGGGEASGGGAAS 64 MNIWSYI+KR LLM+PTL GVVAITFAVIQFVPGGPVEQA++E+KG+ +G Sbjct: 1 MNIWSYIIKRALLMLPTLLGVVAITFAVIQFVPGGPVEQALMELKGQ----VGAGEATGG 56 Query: 65 GASAYRGRQGIDEQRIAEIKQLYGFDKPPVERFWTMLKGFLTFDLGKSFYHHGDVWTLVK 124 GAS YRGRQGID +R+AEIK LYGFDKP ERFW MLKGF TFDLGKSFYHH DVW LV Sbjct: 57 GASQYRGRQGIDAERVAEIKALYGFDKPASERFWQMLKGFATFDLGKSFYHHKDVWDLVV 116 Query: 125 SKFPVSISIGLWTFLLSYLISVPLGIAKAVREGSRFDTATTGLVLVGYSIPGFVLGVFLL 184 SK PVSI++GLWTF L+Y ISVPLGIAKAVREGSRFD T+ +VLVGYSIPGF+LGVFLL Sbjct: 117 SKLPVSITLGLWTFFLTYFISVPLGIAKAVREGSRFDAITSMMVLVGYSIPGFILGVFLL 176 Query: 185 VLFAGGSFVQWFPLRGLTSDNWASLSFTGKITDYLWHITLPVFASVIGAFAVITMLTRNT 244 V+F GGSFVQWFPLRGLTSD+W LS GK+ DYLWHITLPV ASV G+FAV+TMLT+NT Sbjct: 177 VMFGGGSFVQWFPLRGLTSDDWEQLSLLGKVLDYLWHITLPVTASVAGSFAVMTMLTKNT 236 Query: 245 FLEEIRKQYVLTARAKGLSERKVLYKHVFRNALIPLVTGFPSAFIASFFAGSLLIETLFS 304 FL+EIRKQYVLTARAKGLSE VLYKHVFRNALIPLVTGFP+AFI +FFAGSLLIETLFS Sbjct: 237 FLDEIRKQYVLTARAKGLSENAVLYKHVFRNALIPLVTGFPAAFIGAFFAGSLLIETLFS 296 Query: 305 LDGMGLLAYESAIRRDYPVVMGTLYLFTLIGLVVKLVGDLCYVWADPRVQFESLAK 360 LDG+GLL+YES IRRDYPVVMGTLYLFTLIGLVVKL+GDLCYVWADPR+QFESL + Sbjct: 297 LDGLGLLSYESVIRRDYPVVMGTLYLFTLIGLVVKLLGDLCYVWADPRLQFESLNR 352 >ref|YP_001352895.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] gb|ABR89712.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 354 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 282/354 (79%), Positives = 318/354 (89%), Gaps = 2/354 (0%) Query: 5 MNIWSYILKRVLLMIPTLFGVVAITFAVIQFVPGGPVEQAMLEMKGRGGGGEASGGGAAS 64 MN+WSYI+KRVLLM+PTL GV+AITFAVIQFVPGGPVEQA++E+KG+ G G +GGG S Sbjct: 1 MNLWSYIIKRVLLMLPTLLGVIAITFAVIQFVPGGPVEQALVELKGQFGAGGEAGGGGGS 60 Query: 65 GASAYRGRQGIDEQRIAEIKQLYGFDKPPVERFWTMLKGFLTFDLGKSFYHHGDVWTLVK 124 S YRGRQGID +R+AEIK LYGFDKPPVERFW MLKGF TFDLG+SFYHH DVW LV Sbjct: 61 --SQYRGRQGIDAERVAEIKALYGFDKPPVERFWQMLKGFATFDLGQSFYHHKDVWDLVV 118 Query: 125 SKFPVSISIGLWTFLLSYLISVPLGIAKAVREGSRFDTATTGLVLVGYSIPGFVLGVFLL 184 SK PVSI++G+WTF L+Y IS+PLGIAKAVREGSRFD+ +T +VL+GYSIPGF+LGVFLL Sbjct: 119 SKLPVSITLGMWTFFLTYFISLPLGIAKAVREGSRFDSLSTIVVLIGYSIPGFILGVFLL 178 Query: 185 VLFAGGSFVQWFPLRGLTSDNWASLSFTGKITDYLWHITLPVFASVIGAFAVITMLTRNT 244 V+F GGSFVQWF LRGLTSDNW LS GK+ DYLWHI LPV ASV G+FA++TMLT+NT Sbjct: 179 VMFGGGSFVQWFSLRGLTSDNWEQLSLLGKVLDYLWHIALPVTASVAGSFAMMTMLTKNT 238 Query: 245 FLEEIRKQYVLTARAKGLSERKVLYKHVFRNALIPLVTGFPSAFIASFFAGSLLIETLFS 304 FLEEIRKQYVLTARAKGLSE +VLYKHVFRNALIPLVTGFP+AFI +FF GSLLIETLFS Sbjct: 239 FLEEIRKQYVLTARAKGLSENRVLYKHVFRNALIPLVTGFPAAFIGAFFTGSLLIETLFS 298 Query: 305 LDGMGLLAYESAIRRDYPVVMGTLYLFTLIGLVVKLVGDLCYVWADPRVQFESL 358 LDG+GLL+YES IRRDYPVVMGTLYLFTL+GLVVKL+GDLCYVWADPR+QFESL Sbjct: 299 LDGLGLLSYESVIRRDYPVVMGTLYLFTLVGLVVKLLGDLCYVWADPRLQFESL 352 >ref|YP_001100578.1| oligopeptide ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 339 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 274/343 (79%), Positives = 302/343 (88%), Gaps = 4/343 (1%) Query: 18 MIPTLFGVVAITFAVIQFVPGGPVEQAMLEMKGRGGGGEASGGGAASGASAYRGRQGIDE 77 M+PTL GVVAITFAVIQFVPGGPVEQA++E+KG+ +G GAS YRGRQGID Sbjct: 1 MLPTLLGVVAITFAVIQFVPGGPVEQALMELKGQ----VGAGEATGGGASQYRGRQGIDA 56 Query: 78 QRIAEIKQLYGFDKPPVERFWTMLKGFLTFDLGKSFYHHGDVWTLVKSKFPVSISIGLWT 137 +R+AEIK LYGFDKP ERFW MLKGF TFDLGKSFYHH DVW LV SK PVSI++GLWT Sbjct: 57 ERVAEIKALYGFDKPASERFWQMLKGFATFDLGKSFYHHKDVWDLVVSKLPVSITLGLWT 116 Query: 138 FLLSYLISVPLGIAKAVREGSRFDTATTGLVLVGYSIPGFVLGVFLLVLFAGGSFVQWFP 197 F L+Y ISVPLGIAKAVREGSRFD T+ +VLVGYSIPGF+LGVFLLV+F GGSFVQWFP Sbjct: 117 FFLTYFISVPLGIAKAVREGSRFDAITSMMVLVGYSIPGFILGVFLLVMFGGGSFVQWFP 176 Query: 198 LRGLTSDNWASLSFTGKITDYLWHITLPVFASVIGAFAVITMLTRNTFLEEIRKQYVLTA 257 LRGLTSD+W LS GK+ DYLWHITLPV ASV G+FAV+TMLT+NTFL+EIRKQYVLTA Sbjct: 177 LRGLTSDDWEQLSLLGKVLDYLWHITLPVTASVAGSFAVMTMLTKNTFLDEIRKQYVLTA 236 Query: 258 RAKGLSERKVLYKHVFRNALIPLVTGFPSAFIASFFAGSLLIETLFSLDGMGLLAYESAI 317 RAKGLSE VLYKHVFRNALIPLVTGFP+AFI +FFAGSLLIETLFSLDG+GLL+YES I Sbjct: 237 RAKGLSENAVLYKHVFRNALIPLVTGFPAAFIGAFFAGSLLIETLFSLDGLGLLSYESVI 296 Query: 318 RRDYPVVMGTLYLFTLIGLVVKLVGDLCYVWADPRVQFESLAK 360 RRDYPVVMGTLYLFTLIGLVVKL+GDLCYVWADPR+QFESL + Sbjct: 297 RRDYPVVMGTLYLFTLIGLVVKLLGDLCYVWADPRLQFESLNR 339 >ref|YP_296336.1| binding-protein dependent transport system inner membrane protein [Ralstonia eutropha JMP134] gb|AAZ61492.1| Binding-protein-dependent transport systems inner membrane component [Ralstonia eutropha JMP134] Length = 350 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 248/352 (70%), Positives = 299/352 (84%), Gaps = 4/352 (1%) Query: 9 SYILKRVLLMIPTLFGVVAITFAVIQFVPGGPVEQAMLEMKGRGGGGEASGGGAASGASA 68 +Y+ KR+LLMIPTL GV+ +TF VIQFVPGGPVEQ MLE+KGR G A+ G + Sbjct: 3 AYLFKRILLMIPTLIGVITLTFVVIQFVPGGPVEQMMLELKGR----GGGSGEASGGGAE 58 Query: 69 YRGRQGIDEQRIAEIKQLYGFDKPPVERFWTMLKGFLTFDLGKSFYHHGDVWTLVKSKFP 128 YRGR+G+D ++I EI+ LYGFDKPP+ER++ MLK F FDLG+S++ H VW LVKSK P Sbjct: 59 YRGRRGVDPEKIKEIQALYGFDKPPLERYFLMLKRFARFDLGQSYFQHRSVWELVKSKLP 118 Query: 129 VSISIGLWTFLLSYLISVPLGIAKAVREGSRFDTATTGLVLVGYSIPGFVLGVFLLVLFA 188 VS+S+GLWTF L+YLISVPLGI+KA+R GSRFD T+ +VLVGY+IPGFVLGV LLVLF Sbjct: 119 VSVSLGLWTFFLTYLISVPLGISKAIRAGSRFDVVTSMIVLVGYAIPGFVLGVLLLVLFG 178 Query: 189 GGSFVQWFPLRGLTSDNWASLSFTGKITDYLWHITLPVFASVIGAFAVITMLTRNTFLEE 248 GG+FVQWFPLRGLTSDNW LS GK+ DYLWH+ LP+ ASV+G+FAV+TMLT+N FL+E Sbjct: 179 GGTFVQWFPLRGLTSDNWDQLSLMGKVMDYLWHLVLPITASVVGSFAVVTMLTKNAFLDE 238 Query: 249 IRKQYVLTARAKGLSERKVLYKHVFRNALIPLVTGFPSAFIASFFAGSLLIETLFSLDGM 308 IR+QYVLTARAKGLSER+VL+KHVFRNALIPLVTGFP+AFI +FF GSLLIETLFSLDG+ Sbjct: 239 IRRQYVLTARAKGLSERRVLWKHVFRNALIPLVTGFPAAFIGAFFTGSLLIETLFSLDGL 298 Query: 309 GLLAYESAIRRDYPVVMGTLYLFTLIGLVVKLVGDLCYVWADPRVQFESLAK 360 GLL+YE+ +RRDYPVV+GTLYLFTLIGLV +L+ D+CYV DPR+ FE+L K Sbjct: 299 GLLSYEAVLRRDYPVVLGTLYLFTLIGLVTRLISDVCYVLVDPRIHFEALHK 350