BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4290.p (351 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776809.1| ABC transporter permease [Herbaspirillum ser... 563 e-158 ref|YP_001352896.1| ABC-type uncharacterized transport system, p... 514 e-143 ref|YP_001100577.1| oligopeptide ABC transporter membrane protei... 513 e-143 ref|YP_004127297.1| binding-protein-dependent transport systems ... 467 e-129 ref|YP_004388897.1| ABC transporter integral membrane subunit [A... 467 e-129 >ref|YP_003776809.1| ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64901.1| ABC-type uncharacterized transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 348 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 314/349 (89%), Positives = 335/349 (95%), Gaps = 1/349 (0%) Query: 3 MTTPATPSTPSISPSRRIWLRFRADRTGYWSLVIFSILFIVSLGAELVSNDKPLVASYQG 62 M+T +P+ PSISP RRIWLRF ADR GYWSL +FS+LF++SLGAEL+SND+PL+A YQG Sbjct: 1 MSTTTSPA-PSISPGRRIWLRFCADRAGYWSLWLFSLLFVLSLGAELISNDRPLMARYQG 59 Query: 63 KLMFPMLKDYSDKHFGGDFDSPADYLDPFIEQQFRKDGNWVIYPLNRYGYNTLNYFAKEP 122 KL+FP+++DYSDK FGGDFDSPADYLDPFI+ Q RKDGNWV+YP NRYGYNTLNYFAK+P Sbjct: 60 KLIFPIVQDYSDKSFGGDFDSPADYLDPFIQAQLRKDGNWVLYPPNRYGYNTLNYFAKQP 119 Query: 123 NPAAPSSENWLGTDDRGRDVFARLLYGFRVSVLFGMALTFIGVILGVAAGAVQGYFAGRT 182 NPAAPSSENWLGTDDRGRDVFARLLYGFRVSVLFGMALTFIGV+LGVAAGAVQGYFAGRT Sbjct: 120 NPAAPSSENWLGTDDRGRDVFARLLYGFRVSVLFGMALTFIGVVLGVAAGAVQGYFAGRT 179 Query: 183 DLITQRLLEIWGSMPELYLLIIFSSIFQPSLGLLLVLLSLFGWMSLSDYVRADFLRNRNL 242 DL TQRLLEIWGSMPELYLLIIFSSIFQPSLGLLLVLLSLFGWMSLSDYVRADFLRNRNL Sbjct: 180 DLFTQRLLEIWGSMPELYLLIIFSSIFQPSLGLLLVLLSLFGWMSLSDYVRADFLRNRNL 239 Query: 243 EYVQAARAMGLPDRLIIWRHVLPNSMTTVVTFLPFRMSAAILALTSLDFLGLGVPPSTPS 302 EY+QAARAMGLPDRLIIWRHVLPNSMTTVVTFLPFRMSAAILALTSLDFLGLGVPPSTPS Sbjct: 240 EYIQAARAMGLPDRLIIWRHVLPNSMTTVVTFLPFRMSAAILALTSLDFLGLGVPPSTPS 299 Query: 303 LGELLAQGKNNLDAWWIAVATFVVLTVTLLLLTNIGNGLRNALDVRRKA 351 LGELLAQGKNNLDAWWIA++TFVVLTVTLLLLTNIGN LRNALDVRRKA Sbjct: 300 LGELLAQGKNNLDAWWIALSTFVVLTVTLLLLTNIGNALRNALDVRRKA 348 >ref|YP_001352896.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] gb|ABR89768.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 347 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 273/345 (79%), Positives = 307/345 (88%) Query: 7 ATPSTPSISPSRRIWLRFRADRTGYWSLVIFSILFIVSLGAELVSNDKPLVASYQGKLMF 66 A + +SP RR+WLRF+ R GYWSL+IFSIL ++SL AEL+SNDKPLVA Y G+L+F Sbjct: 3 AIATAAPVSPGRRVWLRFKKSRRGYWSLIIFSILVVISLLAELLSNDKPLVARYNGELVF 62 Query: 67 PMLKDYSDKHFGGDFDSPADYLDPFIEQQFRKDGNWVIYPLNRYGYNTLNYFAKEPNPAA 126 P++K YS+K FGGDF+SPADYLDPFI QF+KDGNW IYPLN Y Y+TLNYFA PNPA Sbjct: 63 PIVKTYSEKKFGGDFESPADYLDPFIRDQFKKDGNWAIYPLNHYHYDTLNYFATSPNPAP 122 Query: 127 PSSENWLGTDDRGRDVFARLLYGFRVSVLFGMALTFIGVILGVAAGAVQGYFAGRTDLIT 186 PS+ENWLGTDDRGRDV ARLLYGFRVSVLFG+ALTF GV+LG+ GA+QGYFAG+TDL Sbjct: 123 PSAENWLGTDDRGRDVVARLLYGFRVSVLFGLALTFTGVLLGLITGAIQGYFAGKTDLFF 182 Query: 187 QRLLEIWGSMPELYLLIIFSSIFQPSLGLLLVLLSLFGWMSLSDYVRADFLRNRNLEYVQ 246 QR +EIWG+MPELYLLIIF+SIFQPS+GLLL+LLSLFGWMSLSDYVRADFLRNRNLEYVQ Sbjct: 183 QRFMEIWGAMPELYLLIIFASIFQPSIGLLLILLSLFGWMSLSDYVRADFLRNRNLEYVQ 242 Query: 247 AARAMGLPDRLIIWRHVLPNSMTTVVTFLPFRMSAAILALTSLDFLGLGVPPSTPSLGEL 306 AARA+GL + IIWRHVLPNS+T VVTFLPFRMS AILALTSLDFLGLGVPPST SLGEL Sbjct: 243 AARALGLSNGQIIWRHVLPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPPSTASLGEL 302 Query: 307 LAQGKNNLDAWWIAVATFVVLTVTLLLLTNIGNGLRNALDVRRKA 351 LAQGKNNLDAWWIA++TFVVLTV LLLLTNIG+ LRN+LDVRRKA Sbjct: 303 LAQGKNNLDAWWIALSTFVVLTVMLLLLTNIGDALRNSLDVRRKA 347 >ref|YP_001100577.1| oligopeptide ABC transporter membrane protein [Herminiimonas arsenicoxydans] emb|CAL62455.1| ABC transporter, permease component [Herminiimonas arsenicoxydans] Length = 354 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 273/348 (78%), Positives = 307/348 (88%) Query: 4 TTPATPSTPSISPSRRIWLRFRADRTGYWSLVIFSILFIVSLGAELVSNDKPLVASYQGK 63 +T A P S+SP RR+WLRF+ +R GYWSL+IFSIL +SL AELVSNDKPLVA Y G+ Sbjct: 7 STAAVPGAKSVSPGRRVWLRFKKNRRGYWSLIIFSILVAISLLAELVSNDKPLVARYNGE 66 Query: 64 LMFPMLKDYSDKHFGGDFDSPADYLDPFIEQQFRKDGNWVIYPLNRYGYNTLNYFAKEPN 123 +FP+ YS+K FGGDF+S ADYLDPFI++QFRKDGNW IYPLNRY ++TLNYFA PN Sbjct: 67 WVFPVFTTYSEKKFGGDFESQADYLDPFIQEQFRKDGNWAIYPLNRYHFDTLNYFATSPN 126 Query: 124 PAAPSSENWLGTDDRGRDVFARLLYGFRVSVLFGMALTFIGVILGVAAGAVQGYFAGRTD 183 PA PS+ENWLGTDDRGRDV ARLLYGFRVSVLFG+ALTF GV+LG+ GA+QGYFAG+TD Sbjct: 127 PAPPSAENWLGTDDRGRDVVARLLYGFRVSVLFGLALTFTGVLLGLLTGAIQGYFAGKTD 186 Query: 184 LITQRLLEIWGSMPELYLLIIFSSIFQPSLGLLLVLLSLFGWMSLSDYVRADFLRNRNLE 243 L QR +EIWGSMPELYLLIIF+SIFQPS+GLLL+LLSLFGWM LSDYVRADFLRNRNLE Sbjct: 187 LFFQRFMEIWGSMPELYLLIIFASIFQPSIGLLLILLSLFGWMGLSDYVRADFLRNRNLE 246 Query: 244 YVQAARAMGLPDRLIIWRHVLPNSMTTVVTFLPFRMSAAILALTSLDFLGLGVPPSTPSL 303 YVQAARA+GL + IIWRH+LPNS+T VVTFLPFRMS AILALTSLDFLGLGVP ST SL Sbjct: 247 YVQAARALGLSNAQIIWRHILPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPASTASL 306 Query: 304 GELLAQGKNNLDAWWIAVATFVVLTVTLLLLTNIGNGLRNALDVRRKA 351 GELLAQGKNNLDAWWIA++TFVVLTV LLLLTNIG+ LRN+LDVRRKA Sbjct: 307 GELLAQGKNNLDAWWIALSTFVVLTVMLLLLTNIGDALRNSLDVRRKA 354 >ref|YP_004127297.1| binding-protein-dependent transport systems inner membrane component [Alicycliphilus denitrificans BC] gb|ADV00410.1| binding-protein-dependent transport systems inner membrane component [Alicycliphilus denitrificans BC] Length = 346 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 241/334 (72%), Positives = 284/334 (85%) Query: 16 PSRRIWLRFRADRTGYWSLVIFSILFIVSLGAELVSNDKPLVASYQGKLMFPMLKDYSDK 75 P+RR WLRF+ +R G+WSLV+F L +VSLGAELVSND+PL+ Y+G+ FPMLKDY + Sbjct: 12 PARRAWLRFKRNRLGFWSLVVFCTLVVVSLGAELVSNDRPLIVRYEGQTYFPMLKDYPET 71 Query: 76 HFGGDFDSPADYLDPFIEQQFRKDGNWVIYPLNRYGYNTLNYFAKEPNPAAPSSENWLGT 135 FGGDF +P DYLDPF+ Q+ + GNW +Y LN YG TLNYFAKEPNP+ PS ENWLGT Sbjct: 72 TFGGDFQTPTDYLDPFVRQRLSEGGNWALYTLNPYGPQTLNYFAKEPNPSGPSRENWLGT 131 Query: 136 DDRGRDVFARLLYGFRVSVLFGMALTFIGVILGVAAGAVQGYFAGRTDLITQRLLEIWGS 195 DDRGRD+ A+L+YGFRVSVLFG+ALT +GV+LGVAAGAVQG+F G+TDL QR +EIWGS Sbjct: 132 DDRGRDLLAQLIYGFRVSVLFGIALTVVGVLLGVAAGAVQGFFGGKTDLAFQRFIEIWGS 191 Query: 196 MPELYLLIIFSSIFQPSLGLLLVLLSLFGWMSLSDYVRADFLRNRNLEYVQAARAMGLPD 255 MPELYLLIIFS++F PS+ LLLVLLSLFGWM LSDYVRA+FLRNR L+YV+AARA+G+ Sbjct: 192 MPELYLLIIFSAVFAPSIALLLVLLSLFGWMGLSDYVRAEFLRNRQLDYVKAARALGVKS 251 Query: 256 RLIIWRHVLPNSMTTVVTFLPFRMSAAILALTSLDFLGLGVPPSTPSLGELLAQGKNNLD 315 IIWRH+LPNSMT VVTFLPFRM AAILALTSLDFLGLGVPP TPSLGELL+QGKNN+D Sbjct: 252 GQIIWRHILPNSMTPVVTFLPFRMGAAILALTSLDFLGLGVPPGTPSLGELLSQGKNNID 311 Query: 316 AWWIAVATFVVLTVTLLLLTNIGNGLRNALDVRR 349 AWWI++ TF VL TLLLLT +G+ LR+ALD R+ Sbjct: 312 AWWISIFTFAVLVSTLLLLTFMGDALRDALDPRK 345 >ref|YP_004388897.1| ABC transporter integral membrane subunit [Alicycliphilus denitrificans K601] gb|AEB85381.1| ABC-type transporter, integral membrane subunit [Alicycliphilus denitrificans K601] Length = 346 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 240/334 (71%), Positives = 284/334 (85%) Query: 16 PSRRIWLRFRADRTGYWSLVIFSILFIVSLGAELVSNDKPLVASYQGKLMFPMLKDYSDK 75 P+RR WLRF+ +R G+WSLV+F L ++SLGAELVSND+PL+ Y+G+ FPMLKDY + Sbjct: 12 PARRAWLRFKRNRLGFWSLVVFCTLVVISLGAELVSNDRPLIVRYEGQTYFPMLKDYPET 71 Query: 76 HFGGDFDSPADYLDPFIEQQFRKDGNWVIYPLNRYGYNTLNYFAKEPNPAAPSSENWLGT 135 FGGDF +P DYLDPF+ Q+ + GNW +Y LN YG TLNYFAKEPNP+ PS ENWLGT Sbjct: 72 TFGGDFQTPTDYLDPFVRQRLSEGGNWALYTLNPYGPQTLNYFAKEPNPSGPSRENWLGT 131 Query: 136 DDRGRDVFARLLYGFRVSVLFGMALTFIGVILGVAAGAVQGYFAGRTDLITQRLLEIWGS 195 DDRGRD+ A+L+YGFRVSVLFG+ALT +GV+LGVAAGAVQG+F G+TDL QR +EIWGS Sbjct: 132 DDRGRDLLAQLIYGFRVSVLFGIALTVVGVLLGVAAGAVQGFFGGKTDLAFQRFIEIWGS 191 Query: 196 MPELYLLIIFSSIFQPSLGLLLVLLSLFGWMSLSDYVRADFLRNRNLEYVQAARAMGLPD 255 MPELYLLIIFS++F PS+ LLLVLLSLFGWM LSDYVRA+FLRNR L+YV+AARA+G+ Sbjct: 192 MPELYLLIIFSAVFAPSIALLLVLLSLFGWMGLSDYVRAEFLRNRQLDYVKAARALGVKS 251 Query: 256 RLIIWRHVLPNSMTTVVTFLPFRMSAAILALTSLDFLGLGVPPSTPSLGELLAQGKNNLD 315 IIWRH+LPNSMT VVTFLPFRM AAILALTSLDFLGLGVPP TPSLGELL+QGKNN+D Sbjct: 252 GQIIWRHILPNSMTPVVTFLPFRMGAAILALTSLDFLGLGVPPGTPSLGELLSQGKNNID 311 Query: 316 AWWIAVATFVVLTVTLLLLTNIGNGLRNALDVRR 349 AWWI++ TF VL TLLLLT +G+ LR+ALD R+ Sbjct: 312 AWWISIFTFAVLVSTLLLLTFMGDALRDALDPRK 345