BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4288.p (510 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776807.1| lytic murein transglycosylase [Herbaspirillu... 932 0.0 ref|YP_004752119.1| membrane-bound lytic murein transglycosylase... 684 0.0 ref|YP_001352898.1| membrane-bound lytic murein transglycosylase... 606 e-171 ref|ZP_08272593.1| Membrane-bound lytic murein transglycosylase ... 604 e-170 ref|YP_001100575.1| lytic murein transglycosylase C, membrane-bo... 582 e-164 >ref|YP_003776807.1| lytic murein transglycosylase [Herbaspirillum seropedicae SmR1] gb|ADJ64899.1| lytic murein transglycosylase protein [Herbaspirillum seropedicae SmR1] Length = 509 Score = 932 bits (2408), Expect = 0.0, Method: Composition-based stats. Identities = 495/510 (97%), Positives = 501/510 (98%), Gaps = 1/510 (0%) Query: 1 MQRTLKQLAIAALFCAGTPLLSHANDISIYPAPFNAINPELAGNALPGMNDIDIWTRIRK 60 MQRTLKQLAIAALFCAG PLLS+ANDISIYPAPFNAINPELAGNALPGMNDIDIWTRIRK Sbjct: 1 MQRTLKQLAIAALFCAGAPLLSYANDISIYPAPFNAINPELAGNALPGMNDIDIWTRIRK 60 Query: 61 GFGIPDLDNSLVESQTQWYSSRPDYIQRTTVRASRYLFHVVQELEKRGMPTELALLPFIE 120 GFGIPDLDNSLVESQTQWYSSRPDYIQRTTVRASRYLFHVVQELEKRGMPTELALLPFIE Sbjct: 61 GFGIPDLDNSLVESQTQWYSSRPDYIQRTTVRASRYLFHVVQELEKRGMPTELALLPFIE 120 Query: 121 SAFNPEALSTAKAAGMWQFIPSTGRDYNLKQNMFTDERRDVLASTDAALTYLQKLYGMFG 180 SAFNPEALSTAKAAGMWQFIPSTGRDYNLKQNMFTDERRDVLASTDAALTYLQKLYGMFG Sbjct: 121 SAFNPEALSTAKAAGMWQFIPSTGRDYNLKQNMFTDERRDVLASTDAALTYLQKLYGMFG 180 Query: 181 DWQLALAAYNWGEGSVQRAVNRNLAAGLPIDFNTLSAQMPNETRNYVPKLQAVKNIIANP 240 DWQLALAAYNWGEGSVQRAVNRNLAAG+PIDFNTLSAQMPNETRNYVPKLQAVKNIIANP Sbjct: 181 DWQLALAAYNWGEGSVQRAVNRNLAAGMPIDFNTLSAQMPNETRNYVPKLQAVKNIIANP 240 Query: 241 AAFDIALPKVDNQPYFVTIGKTRNIDVKVAAQLAELSLDEFKALNPQFNRPVIIGGEDTK 300 AAFDIALPKVDNQPYFVTIGKTRNIDVKVAAQLAELSLDEFKALNPQFNRPVIIGGEDTK Sbjct: 241 AAFDIALPKVDNQPYFVTIGKTRNIDVKVAAQLAELSLDEFKALNPQFNRPVIIGGEDTK 300 Query: 301 ILLPESNAEKFKSNMSKWTQAFSTWTAHTVSSARERIETIASKFGTTPEVIRSVNQIPPR 360 ILLPESNAEKFK+NMSKWTQAFSTWTAHTVSSARERIETIASKFGTTPEVIRSVNQIPPR Sbjct: 301 ILLPESNAEKFKANMSKWTQAFSTWTAHTVSSARERIETIASKFGTTPEVIRSVNQIPPR 360 Query: 361 MVLKAGSTILVPKNEETAALDTDLTPEIADNARLAIAPDVPETRRIHVKAGKRDTLAGIA 420 MVLKAGSTILVPK EETAALDTDLTPEIADNARLAIAPDVPETRRI+VKAGKRDTLAGIA Sbjct: 361 MVLKAGSTILVPKTEETAALDTDLTPEIADNARLAIAPDVPETRRIYVKAGKRDTLAGIA 420 Query: 421 SRYRVSVAQIKEWNGLKRDTLAAGQSLQLQVPNAAAHAAPTRVAATHHAAPARRQVASAK 480 SRYRV+VAQIKEWNGLKRDTLAAGQSLQLQVPN A HA TRVA+ H AAPARRQVASAK Sbjct: 421 SRYRVTVAQIKEWNGLKRDTLAAGQSLQLQVPNVAGHAT-TRVASHHRAAPARRQVASAK 479 Query: 481 APVRKAAPAPARKVAGKPLTLASGNGARKQ 510 APVRKAAPAPARKVAGKPLTLASGN ARKQ Sbjct: 480 APVRKAAPAPARKVAGKPLTLASGNDARKQ 509 >ref|YP_004752119.1| membrane-bound lytic murein transglycosylase D [Collimonas fungivorans Ter331] gb|AEK61296.1| Membrane-bound lytic murein transglycosylase D precursor [Collimonas fungivorans Ter331] Length = 502 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 366/507 (72%), Positives = 413/507 (81%), Gaps = 8/507 (1%) Query: 2 QRTLKQLAIAALFCAGTPLLSHANDISIYPAPFNAINPELAGNALPGMNDIDIWTRIRKG 61 Q LK A AAL GTPLL+ ANDISIY F+ I+P + GM +DIW RIRKG Sbjct: 3 QLKLKTFAFAALAFFGTPLLAQANDISIYTPTFSLIDPNDPSAGMLGMEQVDIWARIRKG 62 Query: 62 FGIPDLDNSLVESQTQWYSSRPDYIQRTTVRASRYLFHVVQELEKRGMPTELALLPFIES 121 FGIPDLDN V SQT +YS+RP+Y +RTTVRASRYLFHVVQELEKRGMPTELALLPFIES Sbjct: 63 FGIPDLDNQQVVSQTDFYSARPEYFERTTVRASRYLFHVVQELEKRGMPTELALLPFIES 122 Query: 122 AFNPEALSTAKAAGMWQFIPSTGRDYNLKQNMFTDERRDVLASTDAALTYLQKLYGMFGD 181 AFNP+A S+AKAAGMWQF+P+TGRDYNLKQNMF D+RRDVLASTDAALTYLQKLYGMFGD Sbjct: 123 AFNPQAYSSAKAAGMWQFVPATGRDYNLKQNMFKDDRRDVLASTDAALTYLQKLYGMFGD 182 Query: 182 WQLALAAYNWGEGSVQRAVNRNLAAGLPIDFNTLSAQMPNETRNYVPKLQAVKNIIANPA 241 WQLALAAYNWGEGSVQRA+N+N AAGLPIDFN+L+ MP ETRNYVPKLQAVKNIIA P Sbjct: 183 WQLALAAYNWGEGSVQRAINKNQAAGLPIDFNSLAPLMPAETRNYVPKLQAVKNIIAAPE 242 Query: 242 AFDIALPKVDNQPYFVTIGKTRNIDVKVAAQLAELSLDEFKALNPQFNRPVIIGGEDTKI 301 ++IALPKVDNQPYFVTIGKTR+IDVKVAAQLAELSLDEFKALNPQFNRPVIIG DTKI Sbjct: 243 MYNIALPKVDNQPYFVTIGKTRDIDVKVAAQLAELSLDEFKALNPQFNRPVIIGSSDTKI 302 Query: 302 LLPESNAEKFKSNMSKWTQAFSTWTAHTVSSARERIETIASKFGTTPEVIRSVNQIPPRM 361 LLPESNAEKFK+N++KWTQ S+WT+HTVSSARERIETIA++F TTP +IR VN IPPRM Sbjct: 303 LLPESNAEKFKNNLTKWTQTLSSWTSHTVSSARERIETIAARFDTTPAIIREVNHIPPRM 362 Query: 362 VLKAGSTILVPKNEETAALDTDLTPEIADNARLAIAPDVPETRRIHVKAGKRDTLAGIAS 421 +LKAGSTILVPK E ++ +D+T E+ADNA +A+ PD PETRRI+VK GKRDTLA IAS Sbjct: 363 LLKAGSTILVPKTEASS---SDITAEVADNATMAVTPDAPETRRIYVKVGKRDTLASIAS 419 Query: 422 RYRVSVAQIKEWNGLKRDTLAAGQSLQLQVPNAAAHAAPTRVAATHHAAPARRQVASAKA 481 RYRVSVAQ+K WNGL RD ++ GQSLQLQVPN + + + A R A+A Sbjct: 420 RYRVSVAQVKAWNGLHRDGVSRGQSLQLQVPNRMVASN----SGSKKAGNVRYHKATAST 475 Query: 482 PVRKAAPAPARKVAGKPLTLASGNGAR 508 R + A K KP+ LAS GAR Sbjct: 476 S-RSSKNKVAAKKNTKPVVLASSRGAR 501 >ref|YP_001352898.1| membrane-bound lytic murein transglycosylase D precursor [Janthinobacterium sp. Marseille] gb|ABR88365.1| membrane-bound lytic murein transglycosylase D precursor [Janthinobacterium sp. Marseille] Length = 531 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 328/496 (66%), Positives = 389/496 (78%), Gaps = 26/496 (5%) Query: 21 LSHANDISIYPAPFNAI-------NPELAGNALPGM---NDIDIWTRIRKGFGIPDL-DN 69 LSHA+D+S+ P+N + NP LA + L +D+D+W RIRKGF IPDL DN Sbjct: 33 LSHASDLSL--PPYNWVQDAALQDNPSLANDPLSEFVVASDVDVWARIRKGFAIPDLTDN 90 Query: 70 SLVESQTQWYSSRPDYIQRTTVRASRYLFHVVQELEKRGMPTELALLPFIESAFNPEALS 129 LV +QT WYSSRPDYI RTT RAS YL+HVV+ELEKRGMPTELALLPFIESAFNP+A S Sbjct: 91 QLVINQTIWYSSRPDYIGRTTKRASLYLYHVVEELEKRGMPTELALLPFIESAFNPQAYS 150 Query: 130 TAKAAGMWQFIPSTGRDYNLKQNMFTDERRDVLASTDAALTYLQKLYGMFGDWQLALAAY 189 TAKAAGMWQFIPSTGRD+NLKQNMF DERR VLASTDAALTYLQKLYGMFGDWQLALAAY Sbjct: 151 TAKAAGMWQFIPSTGRDFNLKQNMFKDERRSVLASTDAALTYLQKLYGMFGDWQLALAAY 210 Query: 190 NWGEGSVQRAVNRNLAAGLPIDFNTLSAQMPNETRNYVPKLQAVKNIIANPAAFDIALPK 249 NWGEGSVQRA+ + AAG+ DFN+LSA MP ETRNYVPKLQAVKNIIA+P A+ I L K Sbjct: 211 NWGEGSVQRAIRKAEAAGVGTDFNSLSAYMPAETRNYVPKLQAVKNIIASPDAYGITLLK 270 Query: 250 VDNQPYFVTIGKTRNIDVKVAAQLAELSLDEFKALNPQFNRPVIIGGEDTKILLPESNAE 309 VDNQPYFV+I KTR+IDVK+AAQLAEL +DEFKALNPQFNRPVI G +T+ILLP+SNAE Sbjct: 271 VDNQPYFVSIAKTRDIDVKLAAQLAELPMDEFKALNPQFNRPVITGSSNTQILLPQSNAE 330 Query: 310 KFKSNMSKWTQAFSTWTAHTVSSARERIETIASKFGTTPEVIRSVNQIPPRMVLKAGSTI 369 KFK+N++KW+ A S+WTAH V++ARERIETIA+KF TTP+VIR VN IPP+M+LKAGST+ Sbjct: 331 KFKANLAKWSHALSSWTAHKVTNARERIETIAAKFHTTPQVIREVNNIPPKMLLKAGSTV 390 Query: 370 LVPKNEETAALDTDLTPEIADNARLAIAPDVPETRRIHVKAGKRDTLAGIASRYRVSVAQ 429 LVP+ +ETA D+T E+ADNA LA+ PDVP+T+RI+V K+DT+ +ASRY+VS+AQ Sbjct: 391 LVPRTDETA--QKDITQEVADNATLAMTPDVPDTKRINVVVKKKDTINTLASRYKVSIAQ 448 Query: 430 IKEWNGLKRDTLAAGQSLQLQVPNAAAHAAPTRVAATHHAAPARRQVASAKAPVRKAAPA 489 IK WN L D LA+GQ L++ VP A V A AAP + + P ++A+ Sbjct: 449 IKSWNNLSHDKLASGQKLEIHVPYKA-------VVAKSKAAPGK----TVAKPTKQASRT 497 Query: 490 PARKVAGKPLTLASGN 505 PA+ K L S N Sbjct: 498 PAKTTKAKTLVAKSNN 513 >ref|ZP_08272593.1| Membrane-bound lytic murein transglycosylase D precursor [Oxalobacteraceae bacterium IMCC9480] gb|EGF33946.1| Membrane-bound lytic murein transglycosylase D precursor [Oxalobacteraceae bacterium IMCC9480] Length = 491 Score = 604 bits (1557), Expect = e-170, Method: Composition-based stats. Identities = 316/480 (65%), Positives = 372/480 (77%), Gaps = 4/480 (0%) Query: 2 QRTLKQLAIAALFCAGTPLLSHANDISIYPAPFN-AINPELAGNALPGMNDIDIWTRIRK 60 Q+ L+ L A P S AND+SI P+ + +P + + ++D+W RIR Sbjct: 3 QKLLRTLTFTAFLLLAAPHASQANDLSISPSITDYTYDPSDPVTQVLAIEELDVWGRIRN 62 Query: 61 GFGIPDLDNSLVESQTQWYSSRPDYIQRTTVRASRYLFHVVQELEKRGMPTELALLPFIE 120 GFGIPDLDN LV SQT WYS+RP+YIQRTT+RASRYLFHV+QELEKR MPTELALLPFIE Sbjct: 63 GFGIPDLDNPLVLSQTNWYSARPEYIQRTTLRASRYLFHVLQELEKRDMPTELALLPFIE 122 Query: 121 SAFNPEALSTAKAAGMWQFIPSTGRDYNLKQNMFTDERRDVLASTDAALTYLQKLYGMFG 180 SAFNPEA S+AKA+GMWQFIPSTG D+NLKQNMF DERRDVLASTDAALTYLQKL+GMFG Sbjct: 123 SAFNPEAYSSAKASGMWQFIPSTGLDFNLKQNMFKDERRDVLASTDAALTYLQKLHGMFG 182 Query: 181 DWQLALAAYNWGEGSVQRAVNRNLAAGLPIDFNTLSAQMPNETRNYVPKLQAVKNIIANP 240 DWQLALAAYNWGEGSVQRA+ +N A GL DFN+LSA MP ETRNYVPKLQAVKNIIA P Sbjct: 183 DWQLALAAYNWGEGSVQRAIKKNQANGLATDFNSLSALMPAETRNYVPKLQAVKNIIATP 242 Query: 241 AAFDIALPKVDNQPYFVTIGKTRNIDVKVAAQLAELSLDEFKALNPQFNRPVIIGGEDTK 300 AF I LPK DNQPYFVTIG+TR+ID+KVAAQLAE++LDEFK+LNPQFNRPVI G TK Sbjct: 243 EAFGITLPKADNQPYFVTIGRTRDIDLKVAAQLAEITLDEFKSLNPQFNRPVITGSASTK 302 Query: 301 ILLPESNAEKFKSNMSKWTQAFSTWTAHTVSSARERIETIASKFGTTPEVIRSVNQIPPR 360 ILLP+ NAE+FK N+++W + S+W AHTV+ RERIE IA+ F T P+V+R VN IPP Sbjct: 303 ILLPQQNAERFKINLAQWNRPLSSWMAHTVTK-RERIEAIATLFNTEPQVLRDVNHIPPN 361 Query: 361 MVLKAGSTILVPKNEETAALDTDLTPEIADNARLAIAPDVPETRRIHVKAGKRDTLAGIA 420 M LKAGSTILVPK + A +TD+T E+ADNA +++ PDVP+ RRI V+ GKRD LA IA Sbjct: 362 MRLKAGSTILVPKTAKAA--ETDITAEVADNAVISMEPDVPDFRRIAVRVGKRDNLASIA 419 Query: 421 SRYRVSVAQIKEWNGLKRDTLAAGQSLQLQVPNAAAHAAPTRVAATHHAAPARRQVASAK 480 RY V+VAQ+K WN L+RDTL +GQ+LQ+QVP A+ R P R+ S K Sbjct: 420 QRYNVTVAQVKNWNDLQRDTLRSGQTLQVQVPYRASAKTGQRTVRVAANRPHRKDAGSDK 479 >ref|YP_001100575.1| lytic murein transglycosylase C, membrane-bound [Herminiimonas arsenicoxydans] emb|CAL62453.1| Putative lytic transglycosylase [Herminiimonas arsenicoxydans] Length = 514 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 307/486 (63%), Positives = 376/486 (77%), Gaps = 15/486 (3%) Query: 7 QLAIAALFCAGTPLLSHANDISIYPAPFNAI--------NPELAGNALPGM---NDIDIW 55 +L A++F G +SHA P +++ NP LA + L +D+D+W Sbjct: 11 KLVAASIFLLGISSISHAASDLSLPYSYSSWAQDAALQDNPNLANDPLSEFVVASDVDVW 70 Query: 56 TRIRKGFGIPDL-DNSLVESQTQWYSSRPDYIQRTTVRASRYLFHVVQELEKRGMPTELA 114 RIRKGF IPDL DN LV +QT WYSSRP+YI RTT RAS YL+HVV+ELEKRGMPTELA Sbjct: 71 ARIRKGFAIPDLVDNQLVINQTVWYSSRPEYIGRTTKRASLYLYHVVEELEKRGMPTELA 130 Query: 115 LLPFIESAFNPEALSTAKAAGMWQFIPSTGRDYNLKQNMFTDERRDVLASTDAALTYLQK 174 LLPFIESAFNP+A STAKAAGMWQFIPSTG D+NLKQNMF DERR VLASTDAALTYLQ+ Sbjct: 131 LLPFIESAFNPQAYSTAKAAGMWQFIPSTGLDFNLKQNMFKDERRSVLASTDAALTYLQR 190 Query: 175 LYGMFGDWQLALAAYNWGEGSVQRAVNRNLAAGLPIDFNTLSAQMPNETRNYVPKLQAVK 234 LYGMFGDWQLALAAYNWGEGSVQRA+ + AAG+ DFN+LSA MP ET+NYVPKLQAVK Sbjct: 191 LYGMFGDWQLALAAYNWGEGSVQRAIKKAEAAGVGTDFNSLSAYMPAETKNYVPKLQAVK 250 Query: 235 NIIANPAAFDIALPKVDNQPYFVTIGKTRNIDVKVAAQLAELSLDEFKALNPQFNRPVII 294 NIIA P A+ I+L KVDNQPYFV++ KTR+IDVK+AAQLAEL ++EFKALNPQFNRPVI Sbjct: 251 NIIATPDAYGISLLKVDNQPYFVSVAKTRDIDVKLAAQLAELPMEEFKALNPQFNRPVIT 310 Query: 295 GGEDTKILLPESNAEKFKSNMSKWTQAFSTWTAHTVSSARERIETIASKFGTTPEVIRSV 354 G +T+ILLP+ NAEKFK N++KW+ A S+WTAH +++ARERIET+A++F TTP+VIR V Sbjct: 311 GSSNTQILLPQGNAEKFKINLAKWSHALSSWTAHKITNARERIETVAARFHTTPQVIREV 370 Query: 355 NQIPPRMVLKAGSTILVPKNEETAALDTDLTPEIADNARLAIAPDVPETRRIHVKAGKRD 414 N IPP+MVLKAGSTILVP+ E A D+T E+ADNARLA+APD P+++RI+V K+D Sbjct: 371 NNIPPKMVLKAGSTILVPRMEGMA--QKDITQEVADNARLAMAPDAPDSKRINVTVKKQD 428 Query: 415 TLAGIASRYRVSVAQIKEWNGLKRDTLAAGQSLQLQVP-NAAAHAAPTRVAATHHAAPAR 473 + IA+RY+V++AQIK WN L+ D LA GQ L+L +P A+ A P + ++ Sbjct: 429 SFTSIANRYKVTIAQIKNWNNLRGDKLAHGQKLELHIPFRIASKAKPAESGRKQTSNSSK 488 Query: 474 RQVASA 479 + +A Sbjct: 489 SKTVAA 494