BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4285.p         (155 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776804.1| ribonuclease HI protein [Herbaspirillum sero...   263   6e-69
ref|YP_001100572.1| ribonuclease H [Herminiimonas arsenicoxydans...   235   1e-60
ref|YP_001352901.1| ribonuclease H [Janthinobacterium sp. Marsei...   235   2e-60
ref|YP_004752122.1| ribonuclease HI [Collimonas fungivorans Ter3...   234   2e-60
gb|AAZ39212.1| RNase H [Janthinobacterium lividum] >gi|118161397...   230   6e-59

>ref|YP_003776804.1| ribonuclease HI protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64896.1| ribonuclease HI protein [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score =  263 bits (672), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 140/143 (97%), Positives = 143/143 (100%)

Query: 12  MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 71
           MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR
Sbjct: 1   MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 60

Query: 72  PCEVVVHTDSQYVQKGISEWIHGWKARGWKTSSKEPVKNADLWQALDAAQQQHQVEWRWV 131
           PCEVVVHTDSQYVQKGISEWIHGWKARGWKT+SKEPVKNADLWQALDAAQQQHQVEWRWV
Sbjct: 61  PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 120

Query: 132 RGHNGHSGNERADQLANRGVDSI 154
           RGHNGH+GNERADQLANRGV+SI
Sbjct: 121 RGHNGHAGNERADQLANRGVESI 143


>ref|YP_001100572.1| ribonuclease H [Herminiimonas arsenicoxydans]
 sp|A4G7G3|RNH_HERAR RecName: Full=Ribonuclease H; Short=RNase H
 emb|CAL62450.1| Ribonuclease HI (RNase HI) [Herminiimonas arsenicoxydans]
          Length = 146

 Score =  235 bits (600), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 116/143 (81%), Positives = 133/143 (93%)

Query: 12  MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 71
           M+K++I++DGACKGNPGRGGWGALLV G +EKE+FGGEP TTNNRMEL AVI+ALNAL R
Sbjct: 1   MEKIDIFTDGACKGNPGRGGWGALLVMGEREKELFGGEPGTTNNRMELKAVIEALNALTR 60

Query: 72  PCEVVVHTDSQYVQKGISEWIHGWKARGWKTSSKEPVKNADLWQALDAAQQQHQVEWRWV 131
           PCEV+VHTDSQYVQKGISEWIHGWKARGWKT+++ PVKN DLWQALDAAQ +HQ+EWRWV
Sbjct: 61  PCEVIVHTDSQYVQKGISEWIHGWKARGWKTAARAPVKNVDLWQALDAAQARHQIEWRWV 120

Query: 132 RGHNGHSGNERADQLANRGVDSI 154
           RGHNGH GNERAD LANRGV+++
Sbjct: 121 RGHNGHVGNERADALANRGVETV 143


>ref|YP_001352901.1| ribonuclease H [Janthinobacterium sp. Marseille]
 sp|A6SXA4|RNH_JANMA RecName: Full=Ribonuclease H; Short=RNase H
 gb|ABR89141.1| ribonuclease HI [Janthinobacterium sp. Marseille]
          Length = 144

 Score =  235 bits (600), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 119/141 (84%), Positives = 131/141 (92%)

Query: 12  MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 71
           MDK++IYSDGACKGNPGRGGWGALLV G +EKEIFGGE +TTNNRMEL AVI+ALN L R
Sbjct: 1   MDKIDIYSDGACKGNPGRGGWGALLVMGEREKEIFGGELDTTNNRMELKAVIEALNLLTR 60

Query: 72  PCEVVVHTDSQYVQKGISEWIHGWKARGWKTSSKEPVKNADLWQALDAAQQQHQVEWRWV 131
           PCEVVVHTDSQYVQKGISEWIHGWKARGWKT++K PVKN DLWQALDAAQ +H++EWRWV
Sbjct: 61  PCEVVVHTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNVDLWQALDAAQARHKIEWRWV 120

Query: 132 RGHNGHSGNERADQLANRGVD 152
           RGHNGH+GNERAD LANRGV+
Sbjct: 121 RGHNGHAGNERADALANRGVE 141


>ref|YP_004752122.1| ribonuclease HI [Collimonas fungivorans Ter331]
 gb|AEK61299.1| Ribonuclease HI [Collimonas fungivorans Ter331]
          Length = 144

 Score =  234 bits (598), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 119/143 (83%), Positives = 131/143 (91%)

Query: 12  MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 71
           MDKVEIY+DGACKGNPG GGWGALLVA GKEKE+FGGE NTTNNRMEL AVI+AL AL R
Sbjct: 1   MDKVEIYADGACKGNPGTGGWGALLVADGKEKELFGGERNTTNNRMELKAVIEALTALTR 60

Query: 72  PCEVVVHTDSQYVQKGISEWIHGWKARGWKTSSKEPVKNADLWQALDAAQQQHQVEWRWV 131
           PCEV V+TDSQYVQKGISEWIHGWKARGWKT+++EPVKN DLWQALDAAQ QH++EW+WV
Sbjct: 61  PCEVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWKWV 120

Query: 132 RGHNGHSGNERADQLANRGVDSI 154
           RGH GH GNERADQLANRGV ++
Sbjct: 121 RGHAGHVGNERADQLANRGVTTV 143


>gb|AAZ39212.1| RNase H [Janthinobacterium lividum]
 gb|ABK64079.1| putative ribonuclease H [Janthinobacterium lividum]
          Length = 145

 Score =  230 bits (586), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 116/143 (81%), Positives = 130/143 (90%)

Query: 12  MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 71
           MDKVEIY+DGACKGNPG GGWGAL+VA G +KEI+GGE NTTNNRMEL AVI+AL ALKR
Sbjct: 1   MDKVEIYADGACKGNPGTGGWGALMVADGAKKEIYGGELNTTNNRMELKAVIEALTALKR 60

Query: 72  PCEVVVHTDSQYVQKGISEWIHGWKARGWKTSSKEPVKNADLWQALDAAQQQHQVEWRWV 131
           PC+VV++TDSQYVQKGISEWIHGWKARGWKT++K PVKN DLWQALD AQ  H+VEWRWV
Sbjct: 61  PCQVVLYTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNVDLWQALDTAQAVHEVEWRWV 120

Query: 132 RGHNGHSGNERADQLANRGVDSI 154
           RGHNGH GNERADQLAN GV+++
Sbjct: 121 RGHNGHPGNERADQLANLGVETV 143