BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4284.p (244 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776803.1| DNA polymerase III subunit epsilon [Herbaspi... 467 e-130 ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminii... 326 2e-87 ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobact... 325 3e-87 ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthino... 317 7e-85 ref|YP_004752123.1| DNA polymerase III subunit epsilon [Collimon... 313 1e-83 >ref|YP_003776803.1| DNA polymerase III subunit epsilon [Herbaspirillum seropedicae SmR1] gb|ADJ64895.1| DNA polymerase III, epsilon subunit, protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 467 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 240/244 (98%), Positives = 242/244 (99%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT Sbjct: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKEHVSDVVDS 120 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFK+HV DVVDS Sbjct: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG Sbjct: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 Query: 181 AEEEVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPPPEAA 240 AEE+VSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPPPEA Sbjct: 181 AEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPPPEAT 240 Query: 241 AEAA 244 AEAA Sbjct: 241 AEAA 244 >ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans] emb|CAL62449.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans] Length = 234 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 156/231 (67%), Positives = 196/231 (84%), Gaps = 1/231 (0%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQI+LDTETTGL+PR+G+RI+EIGCVE+++R+L+G N H YINPERDSEEGALAVHGLT Sbjct: 1 MRQIVLDTETTGLNPRSGDRIIEIGCVELIDRRLTGNNFHHYINPERDSEEGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKEHVSDVVDS 120 TEFL+DKP F +I EF DY+ GA+++IHNAPFDVGFLDAEL + +P FK+HV ++D+ Sbjct: 61 TEFLSDKPKFAEIVDEFRDYISGAEVVIHNAPFDVGFLDAELKRVEMPLFKDHVGGILDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 LQ AKELHPG+RNSLDALCDRYG+SNAHR LHGALLDAELLAEVYL+MTRGQNSL+MDLG Sbjct: 121 LQQAKELHPGKRNSLDALCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSMDLG 180 Query: 181 AEEEVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231 ++ S+G LE+ +A++++ A+ EEL HE ++ LDKE +G C+WR Sbjct: 181 GQDADSDGIA-LEVVAIADILLQPATAEELAEHELLMQSLDKEVKGQCLWR 230 >ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium IMCC9480] Length = 235 Score = 325 bits (834), Expect = 3e-87, Method: Composition-based stats. Identities = 158/231 (68%), Positives = 191/231 (82%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQI+LDTETTGL+PR+G+R++EIGCVE++NR+L+GKN H Y+NPERDSEEGALAVHGLT Sbjct: 1 MRQIVLDTETTGLNPRSGDRVIEIGCVEMINRRLTGKNFHCYLNPERDSEEGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKEHVSDVVDS 120 TEFL DKP F +AAE DY+ GA++IIHNAPFDVGFLDAE L +P F VS V+D+ Sbjct: 61 TEFLRDKPKFAAVAAELRDYISGAEVIIHNAPFDVGFLDAEFKRLDIPLFNTQVSGVIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 L AKE+HPG+RNSLD+LCDRYG+SNAHR LHGALLDAELLAEVYL+MTRGQNSL+M+L Sbjct: 121 LVQAKEMHPGKRNSLDSLCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSMELD 180 Query: 181 AEEEVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231 ++ E LEL PLA+++V+ AS EELG HE L LDKE RG+ +WR Sbjct: 181 DGDQAGESGAHLELVPLADILVLPASAEELGEHELALTALDKEMRGTSLWR 231 >ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthinobacterium sp. Marseille] gb|ABR88538.1| DNA polymerase III epsilon subunit [Janthinobacterium sp. Marseille] Length = 235 Score = 317 bits (813), Expect = 7e-85, Method: Composition-based stats. Identities = 161/231 (69%), Positives = 195/231 (84%), Gaps = 1/231 (0%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQI+LDTETTGL+PR+G+RI+EIGCVE++NR+L+G N H YINPERDSEEGALAVHGLT Sbjct: 1 MRQIVLDTETTGLNPRSGDRIIEIGCVELVNRRLTGNNFHHYINPERDSEEGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKEHVSDVVDS 120 TEFL+DKP F +IAAEF DY+ GA +IIHNAPFD+GFLDAEL + P FKEHV +V+D+ Sbjct: 61 TEFLSDKPKFAEIAAEFRDYISGADVIIHNAPFDIGFLDAELKRVNTPSFKEHVGEVIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 L AKE+HPG+RNSLDALCDRYGISNAHR LHGALLDAELLAEVYL+MTRGQNSL+MDLG Sbjct: 121 LVQAKEMHPGKRNSLDALCDRYGISNAHRALHGALLDAELLAEVYLAMTRGQNSLSMDLG 180 Query: 181 AEEEVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231 A + S+G+ LE+ +A V ++AA+ EEL H ++ LDK+ +G VWR Sbjct: 181 ASDVGSDGQ-VLEVVAIAPVQLLAATAEELAAHAAMVESLDKQVKGQSVWR 230 >ref|YP_004752123.1| DNA polymerase III subunit epsilon [Collimonas fungivorans Ter331] gb|AEK61300.1| DNA polymerase III epsilon subunit [Collimonas fungivorans Ter331] Length = 247 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 160/243 (65%), Positives = 191/243 (78%), Gaps = 4/243 (1%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQI+LDTETTGL+PR G+R++EIGCVE+LNR+L+G N H YINPERDSEEGALAVHGLT Sbjct: 3 MRQIVLDTETTGLNPRTGDRVIEIGCVELLNRRLTGNNFHRYINPERDSEEGALAVHGLT 62 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKEHVSDVVDS 120 T FL+DKP F +I E +Y RGAQ+IIHNAPFD+GFLDAE LLG F V+ V+D+ Sbjct: 63 TAFLSDKPKFAEIFDELREYTRGAQVIIHNAPFDLGFLDAEYKLLGKGTFSGDVAGVIDT 122 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDL- 179 L AKE++PG+RNSLDALCDRYGISNAHR LHGALLD+ELLAEVYL+MTRGQNS ++DL Sbjct: 123 LVQAKEMYPGKRNSLDALCDRYGISNAHRTLHGALLDSELLAEVYLAMTRGQNSFSIDLG 182 Query: 180 GAEEEVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPPPEA 239 + G LEL PLA ++V A+ EEL HE VLN LDK+A+G+C+WR P Sbjct: 183 AGHGDADGGGAALELLPLAGIVVRTANAEELAEHELVLNGLDKDAKGACIWR---QPAVD 239 Query: 240 AAE 242 AAE Sbjct: 240 AAE 242