BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4280.p         (56 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776800.1| hypothetical protein Hsero_3411 [Herbaspiril...    89   2e-16
ref|ZP_02885201.1| PaaR repeat-containing protein [Burkholderia ...    68   5e-10
ref|YP_001118288.1| PAAR repeat-containing protein [Burkholderia...    61   5e-08
ref|YP_004362153.1| PAAR repeat-containing protein [Burkholderia...    58   6e-07

>ref|YP_003776800.1| hypothetical protein Hsero_3411 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64892.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 87

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/56 (91%), Positives = 52/56 (92%)

Query: 1  MGKGVALEGDMTQCPQCKGQFAIQPNGGGSTRKHHGKQVAYHGDTTACGASLIASL 56
          MGKGVALEGDMT CP+CKGQFAIQP GG STRKHHGKQVAYHGDTT CGASLIASL
Sbjct: 32 MGKGVALEGDMTTCPKCKGQFAIQPGGGNSTRKHHGKQVAYHGDTTTCGASLIASL 87


>ref|ZP_02885201.1| PaaR repeat-containing protein [Burkholderia graminis C4D1M]
 gb|EDT09289.1| PaaR repeat-containing protein [Burkholderia graminis C4D1M]
          Length = 85

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/56 (67%), Positives = 42/56 (75%), Gaps = 2/56 (3%)

Query: 1  MGKGVALEGDMTQCPQCKGQFAIQPNGGGSTRKHHGKQVAYHGDTTACGASLIASL 56
          MG  VALEGD T CPQC+G +AI P    STR+H GK VAYHGD T CGA+LIASL
Sbjct: 32 MGVPVALEGDKTWCPQCQGTYAILPKD--STRQHLGKAVAYHGDPTECGATLIASL 85


>ref|YP_001118288.1| PAAR repeat-containing protein [Burkholderia vietnamiensis G4]
 gb|ABO53453.1| PAAR repeat-containing protein [Burkholderia vietnamiensis G4]
          Length = 86

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 38/55 (69%), Gaps = 2/55 (3%)

Query: 2  GKGVALEGDMTQCPQCKGQFAIQPNGGGSTRKHHGKQVAYHGDTTACGASLIASL 56
          G  VALEG +T+CP+C GQF I P    STR HHG  VA+H D T CGA LI+SL
Sbjct: 33 GIPVALEGHLTECPKCGGQFRIIPQS--STRNHHGTPVAFHDDLTECGARLISSL 85


>ref|YP_004362153.1| PAAR repeat-containing protein [Burkholderia gladioli BSR3]
 gb|AEA62197.1| PAAR repeat-containing protein [Burkholderia gladioli BSR3]
          Length = 86

 Score = 57.8 bits (138), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 37/56 (66%), Gaps = 2/56 (3%)

Query: 1  MGKGVALEGDMTQCPQCKGQFAIQPNGGGSTRKHHGKQVAYHGDTTACGASLIASL 56
          +G  VAL+  +T CP+C GQF I P    STR HHG  VA+H D T CGA LI+SL
Sbjct: 32 LGVPVALKDHLTWCPKCGGQFRIIPQE--STRNHHGTPVAFHDDPTECGARLISSL 85