BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4279.p (359 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776792.1| hypothetical protein Hsero_3403 [Herbaspiril... 648 0.0 ref|YP_003776797.1| hypothetical protein Hsero_3408 [Herbaspiril... 516 e-144 ref|YP_003776798.1| hypothetical protein Hsero_3409 [Herbaspiril... 483 e-134 ref|YP_003777197.1| hypothetical protein Hsero_3811 [Herbaspiril... 480 e-133 ref|YP_003777195.1| hypothetical protein Hsero_3809 [Herbaspiril... 480 e-133 >ref|YP_003776792.1| hypothetical protein Hsero_3403 [Herbaspirillum seropedicae SmR1] gb|ADJ64884.1| hypothetical protein Hsero_3403 [Herbaspirillum seropedicae SmR1] Length = 345 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 307/341 (90%), Positives = 321/341 (94%) Query: 1 MDERACPSNFGQPIPEWDLRHRLPIDKPVSSERRDTATIFRINSTYMDVTDQPFKDRQWL 60 MDERACPSNFGQPIPEWDLRHRLPIDKPVSSERRDTATIFRINSTYMDVTDQPFKDRQWL Sbjct: 1 MDERACPSNFGQPIPEWDLRHRLPIDKPVSSERRDTATIFRINSTYMDVTDQPFKDRQWL 60 Query: 61 AGGVFIAAFFSALFAVTLIRIVLIPVPTISIGVVAVYCALIGSLIRVTYMVFKYGRDEFF 120 AGGVFIAAFFSALFAVTLIRIVLIPVPTISIGVVAVYCALIGSLIRVTYM FKYGRDEFF Sbjct: 61 AGGVFIAAFFSALFAVTLIRIVLIPVPTISIGVVAVYCALIGSLIRVTYMAFKYGRDEFF 120 Query: 121 SLTRRPIRFNRKERKIHAIRRRRFFCKPSQGDATWEIPWNEHAIFCIHRGVAHCRHVYHI 180 SLTRRP+RFNRKE+KI+AIRRRRFF KP QGD TWEIPW+E+AIFCIHRGVAH R Y I Sbjct: 121 SLTRRPVRFNRKEKKIYAIRRRRFFSKPGQGDITWEIPWDENAIFCIHRGVAHHRRFYDI 180 Query: 181 RYYEVDDHGNVTRAFAIGKKWAEDESLEDLLSQWNYWCWYMNHGPAELPKPLLFFKEKEN 240 RYYEVD GNVTR AIGKKW ++ESL DLL+QWNYWCWYMNHGPAELPKPLLFFKEKEN Sbjct: 181 RYYEVDHDGNVTRTVAIGKKWEDEESLGDLLAQWNYWCWYMNHGPAELPKPLLFFKEKEN 240 Query: 241 SLESFLFCMYGFGMRASADYRISMMPFILLMTGLRLMALWTCREPIWPEAVAQISIIEPD 300 SLESFLFCMYGFGMRASA+YRISMMPFILLMTG RLMAL TCR+PIWPEAVA+ISII+P Sbjct: 241 SLESFLFCMYGFGMRASANYRISMMPFILLMTGFRLMALRTCRDPIWPEAVAKISIIDPG 300 Query: 301 DPFDQPSGDTPVGWAETALALERNEYPNGDKREMKNWNGKK 341 D FDQP GDTPVGWAETALALERNEYP+GDKREMKNW G+K Sbjct: 301 DSFDQPGGDTPVGWAETALALERNEYPDGDKREMKNWTGEK 341 >ref|YP_003776797.1| hypothetical protein Hsero_3408 [Herbaspirillum seropedicae SmR1] gb|ADJ64889.1| hypothetical protein Hsero_3408 [Herbaspirillum seropedicae SmR1] Length = 358 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 249/362 (68%), Positives = 287/362 (79%), Gaps = 12/362 (3%) Query: 1 MDERACPSNFGQPIPEWDLRHRLPIDKPVSSERRDTATIFRINSTYMDVTDQPFKDRQWL 60 MDER GQ IPEWDLRHRL I + V ER+D++TIFRINS+YMDVTDQP++DRQW Sbjct: 1 MDERIFQFKSGQAIPEWDLRHRLHIQRSVGPERKDSSTIFRINSSYMDVTDQPYRDRQWQ 60 Query: 61 AGGV--FIAAFFSALFAVTLIRIVLI----PVPTISIGVVAVYCALIGSLIRVTYMVFKY 114 A GV F+ ++LF T + P +SI +V +++G + FKY Sbjct: 61 AAGVLTFLLGIAASLFYGTSVMQNSSNNPDSDPIMSIFLVMAAISMLG------FFSFKY 114 Query: 115 GRDEFFSLTRRPIRFNRKERKIHAIRRRRFFCKPSQGDATWEIPWNEHAIFCIHRGVAHC 174 GRDEFFSL RRPIRF+RK++KI+AIRRRRFF KP QGD TWE+PW+E+AIFCIHRGV H Sbjct: 115 GRDEFFSLKRRPIRFDRKQKKIYAIRRRRFFAKPGQGDITWEVPWDENAIFCIHRGVVHH 174 Query: 175 RHVYHIRYYEVDDHGNVTRAFAIGKKWAEDESLEDLLSQWNYWCWYMNHGPAELPKPLLF 234 RHVYHIR+YEVD GNV RAF+IG+KW DESLEDLLSQWNYWCWYMNHGPAELPKPLLF Sbjct: 175 RHVYHIRHYEVDQDGNVLRAFSIGRKWEGDESLEDLLSQWNYWCWYMNHGPAELPKPLLF 234 Query: 235 FKEKENSLESFLFCMYGFGMRASADYRISMMPFILLMTGLRLMALWTCREPIWPEAVAQI 294 FKEKEN LESFLFCMY FGMRASA YRI MMP ILLMT RLMALWTCR PIWP+AV ++ Sbjct: 235 FKEKENMLESFLFCMYDFGMRASAAYRIIMMPAILLMTSHRLMALWTCRAPIWPDAVVKV 294 Query: 295 SIIEPDDPFDQPSGDTPVGWAETALALERNEYPNGDKREMKNWNGKKDPVANARLWAQDI 354 S IEPDDPFDQPSG TPVGWAET A++RNEYP+GDKREMKNW+G+K+P NA LWA+D+ Sbjct: 295 SAIEPDDPFDQPSGPTPVGWAETTHAIDRNEYPDGDKREMKNWSGEKNPTVNALLWAKDV 354 Query: 355 PP 356 PP Sbjct: 355 PP 356 >ref|YP_003776798.1| hypothetical protein Hsero_3409 [Herbaspirillum seropedicae SmR1] gb|ADJ64890.1| hypothetical protein Hsero_3409 [Herbaspirillum seropedicae SmR1] Length = 358 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 227/365 (62%), Positives = 282/365 (77%), Gaps = 16/365 (4%) Query: 1 MDERACPSNFGQPIPEWDLRHRLPIDKPVSSERRDTATIFRINSTYMDVTDQPFKDRQWL 60 MDER GQPIPEWD +HRL ID+PV E +DT TIFRINSTYMDVTDQP+ DRQW Sbjct: 1 MDERIFQFKKGQPIPEWDWQHRLSIDQPVGPECKDTGTIFRINSTYMDVTDQPYMDRQWQ 60 Query: 61 AGGVF-----IAAFFSALFAVTLIRIVLI---PVPTISIGVVAVYCALIGSLIRVTYMVF 112 AGGV IAAF S F+++ +R LI +P ++I +V + +L + ++ F Sbjct: 61 AGGVLVACIGIAAFLS--FSISAVRHSLITRQSIPMLTIFIV------VFALSALAFIAF 112 Query: 113 KYGRDEFFSLTRRPIRFNRKERKIHAIRRRRFFCKPSQGDATWEIPWNEHAIFCIHRGVA 172 KYGRDEFF+L RRPIRFNRKE+KI+A+RRRRFF KP QGD TWEIPWNEH+IFCIHRG + Sbjct: 113 KYGRDEFFALKRRPIRFNRKEKKIYAVRRRRFFAKPGQGDVTWEIPWNEHSIFCIHRGTS 172 Query: 173 HCRHVYHIRYYEVDDHGNVTRAFAIGKKWAEDESLEDLLSQWNYWCWYMNHGPAELPKPL 232 + ++ YHIR+YE+D+ G V RAFA+G+KW E+L+ LLSQWNYWCWYMN GPAELPKP Sbjct: 173 NHQNTYHIRHYELDEDGKVVRAFALGRKWEAKENLQGLLSQWNYWCWYMNRGPAELPKPP 232 Query: 233 LFFKEKENSLESFLFCMYGFGMRASADYRISMMPFILLMTGLRLMALWTCREPIWPEAVA 292 LFF E+EN+ ESFLFC+Y FG+RASA YRI+MMPFIL++T RLMA+WTCR+PIWP++V Sbjct: 233 LFFSERENTQESFLFCLYDFGLRASASYRIAMMPFILVLTSHRLMAMWTCRDPIWPKSVE 292 Query: 293 QISIIEPDDPFDQPSGDTPVGWAETALALERNEYPNGDKREMKNWNGKKDPVANARLWAQ 352 ++EPDDP+DQP+G+TP+GW T LA +R +YP+ K EM+ W G+KDP NA LWA Sbjct: 293 DFCVLEPDDPYDQPNGNTPIGWGATVLAKQREQYPHDPKCEMETWRGEKDPALNALLWAA 352 Query: 353 DIPPR 357 DIPPR Sbjct: 353 DIPPR 357 >ref|YP_003777197.1| hypothetical protein Hsero_3811 [Herbaspirillum seropedicae SmR1] gb|ADJ65289.1| hypothetical protein Hsero_3811 [Herbaspirillum seropedicae SmR1] Length = 362 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 229/359 (63%), Positives = 280/359 (77%), Gaps = 6/359 (1%) Query: 1 MDERACPSNFGQPIPEWDLRHRLPIDKPVSSERRDTATIFRINSTYMDVTDQPFKDRQWL 60 MDER G+PIPEWD HRLPID+PV ER+DT+TIFRINS YMDVTDQP+++RQW Sbjct: 1 MDERVFRYKAGEPIPEWDWTHRLPIDQPVGPERKDTSTIFRINSIYMDVTDQPYRERQWQ 60 Query: 61 AGGVFIAAFFSA---LFAVTLIRIVLIPVPTISIGVVAVYCALIGSLIRVTYMVFKYGRD 117 A GV IA F +A FAV + R P I ++ ++ + S + Y+ K+GRD Sbjct: 61 ATGVLIACFGAASILWFAVFMFRN---PPKEFVITLLFLWLVVFLSFVLFVYIAVKFGRD 117 Query: 118 EFFSLTRRPIRFNRKERKIHAIRRRRFFCKPSQGDATWEIPWNEHAIFCIHRGVAHCRHV 177 EFFSL+R+PIRFNRKE+KI+AIRRRRFF +P QGD TWE+PW+E+AIFCIHRG A+ ++ Sbjct: 118 EFFSLSRKPIRFNRKEKKIYAIRRRRFFAEPGQGDITWEVPWDENAIFCIHRGSANHKYT 177 Query: 178 YHIRYYEVDDHGNVTRAFAIGKKWAEDESLEDLLSQWNYWCWYMNHGPAELPKPLLFFKE 237 YHIR+YEVD+ GNV RAF+IG+KW E L+ LLSQWNYWCWYMNHGP ELPKPLLFFKE Sbjct: 178 YHIRHYEVDEDGNVVRAFSIGRKWEGQECLDGLLSQWNYWCWYMNHGPEELPKPLLFFKE 237 Query: 238 KENSLESFLFCMYGFGMRASADYRISMMPFILLMTGLRLMALWTCREPIWPEAVAQISII 297 KE+ LESFLFCMY FGMRASA YR +MMPFIL MT LRL+ALWTCR+PIWP+ V+++S I Sbjct: 238 KEDMLESFLFCMYDFGMRASAAYRTTMMPFILFMTCLRLIALWTCRDPIWPDYVSRVSGI 297 Query: 298 EPDDPFDQPSGDTPVGWAETALALERNEYPNGDKREMKNWNGKKDPVANARLWAQDIPP 356 + DDP D+P G TP+GWAET A+ R +YP+GDK+ M+NW G+KDPV NA LWA +I P Sbjct: 298 KSDDPHDEPRGSTPIGWAETTHAINRKDYPDGDKKTMENWCGEKDPVTNALLWAAEIAP 356 >ref|YP_003777195.1| hypothetical protein Hsero_3809 [Herbaspirillum seropedicae SmR1] gb|ADJ65287.1| hypothetical protein Hsero_3809 [Herbaspirillum seropedicae SmR1] Length = 369 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 226/356 (63%), Positives = 273/356 (76%) Query: 1 MDERACPSNFGQPIPEWDLRHRLPIDKPVSSERRDTATIFRINSTYMDVTDQPFKDRQWL 60 MDER G+PIPEWD HRLPID+PV +DT+TIFRINSTYMDVTDQPF+DRQW Sbjct: 1 MDERVFRYKAGEPIPEWDWTHRLPIDQPVGPVCQDTSTIFRINSTYMDVTDQPFRDRQWQ 60 Query: 61 AGGVFIAAFFSALFAVTLIRIVLIPVPTISIGVVAVYCALIGSLIRVTYMVFKYGRDEFF 120 +G V IA F + F ++L P +I ++ + + L Y+ + GRDE F Sbjct: 61 SGAVLIACFGALSFLWLAGFMLLHPPEEFAITLILPWLVVFLGLGLFGYIAVRLGRDELF 120 Query: 121 SLTRRPIRFNRKERKIHAIRRRRFFCKPSQGDATWEIPWNEHAIFCIHRGVAHCRHVYHI 180 SL+R+PIRFNRKE+KI+AIRRRRFF +P QGD TWE+PW+E+AIFCIHRG A+ ++ YHI Sbjct: 121 SLSRKPIRFNRKEKKIYAIRRRRFFAEPGQGDITWEVPWDENAIFCIHRGSANNKYAYHI 180 Query: 181 RYYEVDDHGNVTRAFAIGKKWAEDESLEDLLSQWNYWCWYMNHGPAELPKPLLFFKEKEN 240 R+YEVD+ GNV RAF+IG+KW E L+ LLSQWNYWCWYMNHGP ELPKPLLFFKEKE+ Sbjct: 181 RHYEVDEDGNVVRAFSIGRKWEGQECLDGLLSQWNYWCWYMNHGPEELPKPLLFFKEKED 240 Query: 241 SLESFLFCMYGFGMRASADYRISMMPFILLMTGLRLMALWTCREPIWPEAVAQISIIEPD 300 LESFLFCMY FGMRAS YRI+MMPFIL MT LRL+ALWTCR+P+WP+ V ++S IE D Sbjct: 241 MLESFLFCMYDFGMRASGAYRITMMPFILFMTCLRLIALWTCRDPVWPDYVGRVSGIEFD 300 Query: 301 DPFDQPSGDTPVGWAETALALERNEYPNGDKREMKNWNGKKDPVANARLWAQDIPP 356 DP D+P G TP+GWAET A+ R +YP+G KR M+NW G+KDPV NA LWA DIPP Sbjct: 301 DPHDEPRGSTPIGWAETTHAINRKDYPDGAKRTMENWRGEKDPVLNALLWAADIPP 356