BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4278.p (358 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776791.1| hypothetical protein Hsero_3402 [Herbaspiril... 732 0.0 ref|YP_003776798.1| hypothetical protein Hsero_3409 [Herbaspiril... 511 e-142 ref|YP_003777198.1| hypothetical protein Hsero_3812 [Herbaspiril... 500 e-139 ref|YP_003777195.1| hypothetical protein Hsero_3809 [Herbaspiril... 496 e-138 ref|YP_003776797.1| hypothetical protein Hsero_3408 [Herbaspiril... 480 e-133 >ref|YP_003776791.1| hypothetical protein Hsero_3402 [Herbaspirillum seropedicae SmR1] gb|ADJ64883.1| hypothetical protein Hsero_3402 [Herbaspirillum seropedicae SmR1] Length = 358 Score = 732 bits (1889), Expect = 0.0, Method: Composition-based stats. Identities = 355/358 (99%), Positives = 356/358 (99%) Query: 1 MDERIFSYKAGAPIPAWDLEHRLSIHEPVAPECKDTGTVIRDNSTYMDVTDQPYRDRQWH 60 MDERIFSYKAGAPIPAWDLEHRLSIHEPVAPECKDTGTV R NSTYMDVTDQPYRDRQWH Sbjct: 1 MDERIFSYKAGAPIPAWDLEHRLSIHEPVAPECKDTGTVFRVNSTYMDVTDQPYRDRQWH 60 Query: 61 AGGVLTSCIGVAAPLGLIGYMLIHPPREFVFTLAIVWLVLLASSATFAYLTWKYGKDEFF 120 AGGVLTSCIGVAAPLGLIGYMLIHPPREFVFTLAIVWLVLLASSATFAYLTWKYGKDEFF Sbjct: 61 AGGVLTSCIGVAAPLGLIGYMLIHPPREFVFTLAIVWLVLLASSATFAYLTWKYGKDEFF 120 Query: 121 ALKRRPIRFHRKEKKIYAIRHRRFFSKPGQGDFAWEIAWNENAIFCIHKRIVNYRPSYNI 180 ALKRRPIRFHRKEKKIYAIRHRRFFSKPGQGDFAWEIAWNENAIFCIHKRIVNYRPSY+I Sbjct: 121 ALKRRPIRFHRKEKKIYAIRHRRFFSKPGQGDFAWEIAWNENAIFCIHKRIVNYRPSYHI 180 Query: 181 RHYEVDQDGNVIRAFSIGRTWEGKRNLQGLLSQWNYWCWYMNHGPADLPRPPLYFKEHET 240 RHYEVDQDGNVIRAFSIGRTWEGKRNLQGLLSQWNYWCWYMNHGPADLPRPPLYFKEHET Sbjct: 181 RHYEVDQDGNVIRAFSIGRTWEGKRNLQGLLSQWNYWCWYMNHGPADLPRPPLYFKEHET 240 Query: 241 ALESFLFCLYDFGTRASVAYRISVMPFVLLMTSHRLMALWTCRDPVWPQAIEALSTIEPG 300 ALESFLFCLYDFGTRASVAYRISVMPFVLLMTSHRLMALWTCRDPVWPQAIEALSTIEPG Sbjct: 241 ALESFLFCLYDFGTRASVAYRISVMPFVLLMTSHRLMALWTCRDPVWPQAIEALSTIEPG 300 Query: 301 DPYDEPRGGTPTGWGETAQAIERGEYPYDPKSDMKVWRGQKDPARNALLWAEDIPPRY 358 DPYDEPRGGTPTGWGETAQAIERGEYPYDPKSDMKVWRGQKDPARNALLWAEDIPPRY Sbjct: 301 DPYDEPRGGTPTGWGETAQAIERGEYPYDPKSDMKVWRGQKDPARNALLWAEDIPPRY 358 >ref|YP_003776798.1| hypothetical protein Hsero_3409 [Herbaspirillum seropedicae SmR1] gb|ADJ64890.1| hypothetical protein Hsero_3409 [Herbaspirillum seropedicae SmR1] Length = 358 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 235/359 (65%), Positives = 288/359 (80%), Gaps = 4/359 (1%) Query: 1 MDERIFSYKAGAPIPAWDLEHRLSIHEPVAPECKDTGTVIRDNSTYMDVTDQPYRDRQWH 60 MDERIF +K G PIP WD +HRLSI +PV PECKDTGT+ R NSTYMDVTDQPY DRQW Sbjct: 1 MDERIFQFKKGQPIPEWDWQHRLSIDQPVGPECKDTGTIFRINSTYMDVTDQPYMDRQWQ 60 Query: 61 AGGVLTSCIGVAAPLGLIGYMLIHP--PREFVFTLAIVWLVLLASSATFAYLTWKYGKDE 118 AGGVL +CIG+AA L + H R+ + L I ++V+ A SA A++ +KYG+DE Sbjct: 61 AGGVLVACIGIAAFLSFSISAVRHSLITRQSIPMLTI-FIVVFALSA-LAFIAFKYGRDE 118 Query: 119 FFALKRRPIRFHRKEKKIYAIRHRRFFSKPGQGDFAWEIAWNENAIFCIHKRIVNYRPSY 178 FFALKRRPIRF+RKEKKIYA+R RRFF+KPGQGD WEI WNE++IFCIH+ N++ +Y Sbjct: 119 FFALKRRPIRFNRKEKKIYAVRRRRFFAKPGQGDVTWEIPWNEHSIFCIHRGTSNHQNTY 178 Query: 179 NIRHYEVDQDGNVIRAFSIGRTWEGKRNLQGLLSQWNYWCWYMNHGPADLPRPPLYFKEH 238 +IRHYE+D+DG V+RAF++GR WE K NLQGLLSQWNYWCWYMN GPA+LP+PPL+F E Sbjct: 179 HIRHYELDEDGKVVRAFALGRKWEAKENLQGLLSQWNYWCWYMNRGPAELPKPPLFFSER 238 Query: 239 ETALESFLFCLYDFGTRASVAYRISVMPFVLLMTSHRLMALWTCRDPVWPQAIEALSTIE 298 E ESFLFCLYDFG RAS +YRI++MPF+L++TSHRLMA+WTCRDP+WP+++E +E Sbjct: 239 ENTQESFLFCLYDFGLRASASYRIAMMPFILVLTSHRLMAMWTCRDPIWPKSVEDFCVLE 298 Query: 299 PGDPYDEPRGGTPTGWGETAQAIERGEYPYDPKSDMKVWRGQKDPARNALLWAEDIPPR 357 P DPYD+P G TP GWG T A +R +YP+DPK +M+ WRG+KDPA NALLWA DIPPR Sbjct: 299 PDDPYDQPNGNTPIGWGATVLAKQREQYPHDPKCEMETWRGEKDPALNALLWAADIPPR 357 >ref|YP_003777198.1| hypothetical protein Hsero_3812 [Herbaspirillum seropedicae SmR1] gb|ADJ65290.1| hypothetical protein Hsero_3812 [Herbaspirillum seropedicae SmR1] Length = 360 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 231/361 (63%), Positives = 282/361 (78%), Gaps = 9/361 (2%) Query: 1 MDERIFSYKAGAPIPAWDLEHRLSIHEPVAPECKDTGTVIRDNSTYMDVTDQPYRDRQWH 60 MDERIF +K G PIP WDL+HRLSI+ PV PECKDT T+ R NST+MDVTDQP+R+RQW Sbjct: 1 MDERIFQFKTGRPIPEWDLKHRLSINNPVGPECKDTSTIFRINSTFMDVTDQPFRERQWL 60 Query: 61 AGGVLTSCIGVAAPLGLIGYML---IHPPREFVFTLAIVWLVLLASSATFAYLTWKYGKD 117 AG VL SC+GV G+ Y L ++P + L L + F Y +++G+D Sbjct: 61 AGAVLVSCLGVVG--GMWSYYLTRVLYPDAGGILGD----LYCLVITFLFGYFAFRHGRD 114 Query: 118 EFFALKRRPIRFHRKEKKIYAIRHRRFFSKPGQGDFAWEIAWNENAIFCIHKRIVNYRPS 177 EFF+LKRRPIRF+RKEKKIYAIR RRFF+KPGQGD WE+ W+ENAIFCIH+ N++ + Sbjct: 115 EFFSLKRRPIRFNRKEKKIYAIRRRRFFAKPGQGDITWEVPWDENAIFCIHRGSSNHKNT 174 Query: 178 YNIRHYEVDQDGNVIRAFSIGRTWEGKRNLQGLLSQWNYWCWYMNHGPADLPRPPLYFKE 237 Y+IRHYEVD++GNV+RAF+IGR WE K NLQGLLSQWNYWCWYMN GP DLP+PPL+F E Sbjct: 175 YHIRHYEVDEEGNVVRAFAIGRKWEQKENLQGLLSQWNYWCWYMNRGPEDLPKPPLFFCE 234 Query: 238 HETALESFLFCLYDFGTRASVAYRISVMPFVLLMTSHRLMALWTCRDPVWPQAIEALSTI 297 E+A+ESFLFCLYDFG A AYRI++MPF+LL+TSHRLMALWTCRDP+WP A+E +S + Sbjct: 235 RESAMESFLFCLYDFGASAGAAYRIAMMPFILLLTSHRLMALWTCRDPIWPAAVEKVSVV 294 Query: 298 EPGDPYDEPRGGTPTGWGETAQAIERGEYPYDPKSDMKVWRGQKDPARNALLWAEDIPPR 357 PGDP+DEP G TP GWG+T AI R EYPYDP+ ++ W G+KDPA NALLW+ED PP Sbjct: 295 RPGDPFDEPSGSTPVGWGDTLLAINRNEYPYDPQKEVNEWLGEKDPAVNALLWSEDTPPN 354 Query: 358 Y 358 + Sbjct: 355 W 355 >ref|YP_003777195.1| hypothetical protein Hsero_3809 [Herbaspirillum seropedicae SmR1] gb|ADJ65287.1| hypothetical protein Hsero_3809 [Herbaspirillum seropedicae SmR1] Length = 369 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 229/356 (64%), Positives = 272/356 (76%) Query: 1 MDERIFSYKAGAPIPAWDLEHRLSIHEPVAPECKDTGTVIRDNSTYMDVTDQPYRDRQWH 60 MDER+F YKAG PIP WD HRL I +PV P C+DT T+ R NSTYMDVTDQP+RDRQW Sbjct: 1 MDERVFRYKAGEPIPEWDWTHRLPIDQPVGPVCQDTSTIFRINSTYMDVTDQPFRDRQWQ 60 Query: 61 AGGVLTSCIGVAAPLGLIGYMLIHPPREFVFTLAIVWLVLLASSATFAYLTWKYGKDEFF 120 +G VL +C G + L L G+ML+HPP EF TL + WLV+ F Y+ + G+DE F Sbjct: 61 SGAVLIACFGALSFLWLAGFMLLHPPEEFAITLILPWLVVFLGLGLFGYIAVRLGRDELF 120 Query: 121 ALKRRPIRFHRKEKKIYAIRHRRFFSKPGQGDFAWEIAWNENAIFCIHKRIVNYRPSYNI 180 +L R+PIRF+RKEKKIYAIR RRFF++PGQGD WE+ W+ENAIFCIH+ N + +Y+I Sbjct: 121 SLSRKPIRFNRKEKKIYAIRRRRFFAEPGQGDITWEVPWDENAIFCIHRGSANNKYAYHI 180 Query: 181 RHYEVDQDGNVIRAFSIGRTWEGKRNLQGLLSQWNYWCWYMNHGPADLPRPPLYFKEHET 240 RHYEVD+DGNV+RAFSIGR WEG+ L GLLSQWNYWCWYMNHGP +LP+P L+FKE E Sbjct: 181 RHYEVDEDGNVVRAFSIGRKWEGQECLDGLLSQWNYWCWYMNHGPEELPKPLLFFKEKED 240 Query: 241 ALESFLFCLYDFGTRASVAYRISVMPFVLLMTSHRLMALWTCRDPVWPQAIEALSTIEPG 300 LESFLFC+YDFG RAS AYRI++MPF+L MT RL+ALWTCRDPVWP + +S IE Sbjct: 241 MLESFLFCMYDFGMRASGAYRITMMPFILFMTCLRLIALWTCRDPVWPDYVGRVSGIEFD 300 Query: 301 DPYDEPRGGTPTGWGETAQAIERGEYPYDPKSDMKVWRGQKDPARNALLWAEDIPP 356 DP+DEPRG TP GW ET AI R +YP K M+ WRG+KDP NALLWA DIPP Sbjct: 301 DPHDEPRGSTPIGWAETTHAINRKDYPDGAKRTMENWRGEKDPVLNALLWAADIPP 356 >ref|YP_003776797.1| hypothetical protein Hsero_3408 [Herbaspirillum seropedicae SmR1] gb|ADJ64889.1| hypothetical protein Hsero_3408 [Herbaspirillum seropedicae SmR1] Length = 358 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 224/362 (61%), Positives = 277/362 (76%), Gaps = 8/362 (2%) Query: 1 MDERIFSYKAGAPIPAWDLEHRLSIHEPVAPECKDTGTVIRDNSTYMDVTDQPYRDRQWH 60 MDERIF +K+G IP WDL HRL I V PE KD+ T+ R NS+YMDVTDQPYRDRQW Sbjct: 1 MDERIFQFKSGQAIPEWDLRHRLHIQRSVGPERKDSSTIFRINSSYMDVTDQPYRDRQWQ 60 Query: 61 AGGVLTSCIGVAAPL----GLIGYMLIHPPREFVFTLAIVWLVLLASSATFAYLTWKYGK 116 A GVLT +G+AA L ++ +P + + ++ +V +A+ + + ++KYG+ Sbjct: 61 AAGVLTFLLGIAASLFYGTSVMQNSSNNPDSDPIMSIFLV----MAAISMLGFFSFKYGR 116 Query: 117 DEFFALKRRPIRFHRKEKKIYAIRHRRFFSKPGQGDFAWEIAWNENAIFCIHKRIVNYRP 176 DEFF+LKRRPIRF RK+KKIYAIR RRFF+KPGQGD WE+ W+ENAIFCIH+ +V++R Sbjct: 117 DEFFSLKRRPIRFDRKQKKIYAIRRRRFFAKPGQGDITWEVPWDENAIFCIHRGVVHHRH 176 Query: 177 SYNIRHYEVDQDGNVIRAFSIGRTWEGKRNLQGLLSQWNYWCWYMNHGPADLPRPPLYFK 236 Y+IRHYEVDQDGNV+RAFSIGR WEG +L+ LLSQWNYWCWYMNHGPA+LP+P L+FK Sbjct: 177 VYHIRHYEVDQDGNVLRAFSIGRKWEGDESLEDLLSQWNYWCWYMNHGPAELPKPLLFFK 236 Query: 237 EHETALESFLFCLYDFGTRASVAYRISVMPFVLLMTSHRLMALWTCRDPVWPQAIEALST 296 E E LESFLFC+YDFG RAS AYRI +MP +LLMTSHRLMALWTCR P+WP A+ +S Sbjct: 237 EKENMLESFLFCMYDFGMRASAAYRIIMMPAILLMTSHRLMALWTCRAPIWPDAVVKVSA 296 Query: 297 IEPGDPYDEPRGGTPTGWGETAQAIERGEYPYDPKSDMKVWRGQKDPARNALLWAEDIPP 356 IEP DP+D+P G TP GW ET AI+R EYP K +MK W G+K+P NALLWA+D+PP Sbjct: 297 IEPDDPFDQPSGPTPVGWAETTHAIDRNEYPDGDKREMKNWSGEKNPTVNALLWAKDVPP 356 Query: 357 RY 358 + Sbjct: 357 EH 358