BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4277.p         (145 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776790.1| hypothetical protein Hsero_3401 [Herbaspiril...   291   2e-77
ref|YP_003776796.1| transmembrane protein [Herbaspirillum serope...   146   1e-33
ref|YP_003777199.1| transmembrane protein [Herbaspirillum serope...   144   6e-33
ref|YP_004362155.1| hypothetical protein bgla_1g35960 [Burkholde...   115   2e-24
ref|YP_001118286.1| hypothetical protein Bcep1808_0439 [Burkhold...   113   9e-24

>ref|YP_003776790.1| hypothetical protein Hsero_3401 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64882.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 829

 Score =  291 bits (745), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MVEIAMVSVEKSVEHPLAVFIRNQWAVDAELVSTILKRARKAGMVAGVLAELYDLVFNAP 60
           MVEIAMVSVEKSVEHPLAVFIRNQWAVDAELVSTILKRARKAGMVAGVLAELYDLVFNAP
Sbjct: 685 MVEIAMVSVEKSVEHPLAVFIRNQWAVDAELVSTILKRARKAGMVAGVLAELYDLVFNAP 744

Query: 61  QEFKDENYLLMALYVLNGILGIGIALAAYYAITSIWAPLLLISFAVGIALALVNNSQLKT 120
           QEFKDENYLLMALYVLNGILGIGIALAAYYAITSIWAPLLLISFAVGIALALVNNSQLKT
Sbjct: 745 QEFKDENYLLMALYVLNGILGIGIALAAYYAITSIWAPLLLISFAVGIALALVNNSQLKT 804

Query: 121 WISRCDFSLGEKYSSFEDQIKAFNG 145
           WISRCDFSLGEKYSSFEDQIKAFNG
Sbjct: 805 WISRCDFSLGEKYSSFEDQIKAFNG 829


>ref|YP_003776796.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64888.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 837

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/144 (50%), Positives = 98/144 (68%)

Query: 1   MVEIAMVSVEKSVEHPLAVFIRNQWAVDAELVSTILKRARKAGMVAGVLAELYDLVFNAP 60
           +VEIA VS + ++EHPL  FIR QWAV  + +  I+K AR  G +AGV+A  YD++ N+ 
Sbjct: 689 IVEIAAVSADPAMEHPLGAFIRRQWAVSEKALERIIKGARFFGALAGVVAGFYDILVNSS 748

Query: 61  QEFKDENYLLMALYVLNGILGIGIALAAYYAITSIWAPLLLISFAVGIALALVNNSQLKT 120
              K  +  L  LY +NGILGI +  A Y++I +I  PL + SF VGIA+A  N S LK 
Sbjct: 749 NANKAGDERLSDLYFINGILGIVLPAAIYFSIGAIAWPLFIFSFVVGIAIAYYNASALKN 808

Query: 121 WISRCDFSLGEKYSSFEDQIKAFN 144
           W++RC+FS GEKY+SFE Q+KAFN
Sbjct: 809 WVARCEFSTGEKYNSFEMQLKAFN 832


>ref|YP_003777199.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65291.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 833

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 76/143 (53%), Positives = 98/143 (68%), Gaps = 1/143 (0%)

Query: 1   MVEIAMVSVEKSVEHPLAVFIRNQWAVDAELVSTILKRARKAGMVAGVLAELYDLVFNAP 60
           +VE   VSV+KSV HP   FI  QWA+D +L   I++ AR AGM AG+LA  +D+  +A 
Sbjct: 686 LVETVAVSVQKSVGHPSGAFIYGQWAIDKKL-GKIIQGARLAGMGAGILAGAFDIAVSAR 744

Query: 61  QEFKDENYLLMALYVLNGILGIGIALAAYYAITSIWAPLLLISFAVGIALALVNNSQLKT 120
             F ++  LL  LY+ NG L  GI++AAY  I  I+ P L+ SF V IA+ALVN+S LKT
Sbjct: 745 VAFGEKKQLLGWLYLANGTLSAGISIAAYSTIGGIFWPFLVSSFLVSIAIALVNDSALKT 804

Query: 121 WISRCDFSLGEKYSSFEDQIKAF 143
           WISRC+F LGEKY SFE Q+KA+
Sbjct: 805 WISRCEFGLGEKYGSFEGQLKAY 827


>ref|YP_004362155.1| hypothetical protein bgla_1g35960 [Burkholderia gladioli BSR3]
 gb|AEA62199.1| hypothetical protein bgla_1g35960 [Burkholderia gladioli BSR3]
          Length = 855

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/144 (40%), Positives = 89/144 (61%), Gaps = 1/144 (0%)

Query: 1   MVEIAMVSVEKSVEHPLAVFIRNQWAVDAELVSTILKRARKAGMVAGVLAELYDLVFNAP 60
           ++E A  +V K+  HPL+ FI  QWA  +E      K  R  G +AG++   +DL+ NAP
Sbjct: 708 VIETASETVAKAPAHPLSAFIMKQWAGASEWAEVGAKVGRGLGALAGIVLAGFDLIKNAP 767

Query: 61  QEFKDENYLLMALYVLNGILGIGIALAAYYAITSIWAPLLLISFAVGIALALVNNSQLKT 120
           + ++++   L  LY L+G LG+ +A AA+++    W P L++S  VGIA+A+   S LK 
Sbjct: 768 EAYRNKETKLWVLYNLSGALGVYVAAAAFFSWPLFW-PALILSILVGIAIAIFKASALKD 826

Query: 121 WISRCDFSLGEKYSSFEDQIKAFN 144
           W+SRC FS GE Y S E ++KAF+
Sbjct: 827 WVSRCKFSKGEHYDSLEAELKAFS 850


>ref|YP_001118286.1| hypothetical protein Bcep1808_0439 [Burkholderia vietnamiensis G4]
 gb|ABO53451.1| hypothetical protein Bcep1808_0439 [Burkholderia vietnamiensis G4]
          Length = 858

 Score =  113 bits (283), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 57/144 (39%), Positives = 88/144 (61%), Gaps = 1/144 (0%)

Query: 1   MVEIAMVSVEKSVEHPLAVFIRNQWAVDAELVSTILKRARKAGMVAGVLAELYDLVFNAP 60
           ++E A  +V K+  HPL+ F+  QWA  +E      K  R  G +AG++   +DL+ NAP
Sbjct: 711 VIETASETVVKAPAHPLSAFLMKQWAGASEWAEVGAKVGRGLGAIAGIVLAGFDLIKNAP 770

Query: 61  QEFKDENYLLMALYVLNGILGIGIALAAYYAITSIWAPLLLISFAVGIALALVNNSQLKT 120
           + ++++   L  LY ++G LG+ +A AA++     W P L++S  VGIA+A+   S LK 
Sbjct: 771 EAYRNKETKLWVLYNVSGALGVYVAAAAFFGWPLFW-PALILSILVGIAIAIFKASALKD 829

Query: 121 WISRCDFSLGEKYSSFEDQIKAFN 144
           W+SRC FS GE Y S E ++KAF+
Sbjct: 830 WVSRCKFSTGEHYDSLEAELKAFS 853