BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4271.p (414 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776788.1| D-xylulose kinase [Herbaspirillum seropedica... 734 0.0 ref|YP_001862730.1| xylulokinase [Burkholderia phymatum STM815] ... 561 e-158 ref|YP_003609019.1| xylulokinase [Burkholderia sp. CCGE1002] >gi... 557 e-156 ref|ZP_02881811.1| xylulokinase [Burkholderia graminis C4D1M] >g... 537 e-150 ref|YP_003909061.1| xylulokinase [Burkholderia sp. CCGE1003] >gi... 532 e-149 >ref|YP_003776788.1| D-xylulose kinase [Herbaspirillum seropedicae SmR1] gb|ADJ64880.1| D-xylulose kinase protein [Herbaspirillum seropedicae SmR1] Length = 493 Score = 734 bits (1896), Expect = 0.0, Method: Composition-based stats. Identities = 391/414 (94%), Positives = 402/414 (97%) Query: 1 MHGATLLDRNGNVLRPAILWNDMRAHAECVELEALVPDAPAITGNRAMPGFTAPKLLWLS 60 MHGATLLDRNGNVLRPAILWNDMRAHAECVELEALVPDA AITGNRAMPGFTAPKLLWLS Sbjct: 80 MHGATLLDRNGNVLRPAILWNDMRAHAECVELEALVPDAVAITGNRAMPGFTAPKLLWLS 139 Query: 61 KYEPAVYRAIDKVLLPKDYLGWKLTGEFVSEMSDAAGTLWLDVAQRDWSDRMLAATGLDR 120 KYEPAVYRAIDKVLLPKD+LGWKLTGEFVSEMSDAAGTLWLDVA+RDWS+RML ATGLDR Sbjct: 140 KYEPAVYRAIDKVLLPKDFLGWKLTGEFVSEMSDAAGTLWLDVARRDWSERMLGATGLDR 199 Query: 121 SHMPRLVEGSDEAGHLREELRREWGINGPVVVAGGAGDNAASAVGIGVIQAGDAFLSLGS 180 SHMPRLVEGS AG LR+ELRREWGI+GPVVVAGGAGDNAASAVGIGVI+AGDAFLSLGS Sbjct: 200 SHMPRLVEGSAVAGQLRDELRREWGISGPVVVAGGAGDNAASAVGIGVIRAGDAFLSLGS 259 Query: 181 SGVLFAATARHAPNPQQGVHAFCHCLPGQWHQMSVILSAAASLHWLSGVTARPVGELVAG 240 SGVLFAATA HAPN QQGVHAFCHCLPGQWHQMSVILSAAASLHWLSGVTARPV ELV+G Sbjct: 260 SGVLFAATAHHAPNAQQGVHAFCHCLPGQWHQMSVILSAAASLHWLSGVTARPVAELVSG 319 Query: 241 AERLTATQQAQAPLFLPYLNGERTPHNDATAKGVLFGMTPAHETAHLAYAVMEGVAFAMA 300 AERL+A QQAQAPLFLPYLNGERTPHNDA AKGVLFGMTPAHE+AHLAYAVMEGVAFAMA Sbjct: 320 AERLSAGQQAQAPLFLPYLNGERTPHNDAAAKGVLFGMTPAHESAHLAYAVMEGVAFAMA 379 Query: 301 DGYAALQAAGTTLESAAFVGGGSRSAFWGELCATALGMPLRRHAGAEVGAALGAARLGRL 360 DGYAALQAAGTTLESAAFVGGGSRSAFWG LCATALG+PLRRHAGAEVGAALGAARLGRL Sbjct: 380 DGYAALQAAGTTLESAAFVGGGSRSAFWGVLCATALGIPLRRHAGAEVGAALGAARLGRL 439 Query: 361 ARTGEDAASVCVPPEVLEWYRPDTARQAQLQRRLAQYRRLYRSLADEFIAFSQS 414 ARTGEDAASVC+PPEVLEWYRPD ARQAQLQRRLAQYRRLYRSLADEFIAFSQS Sbjct: 440 ARTGEDAASVCIPPEVLEWYRPDAARQAQLQRRLAQYRRLYRSLADEFIAFSQS 493 >ref|YP_001862730.1| xylulokinase [Burkholderia phymatum STM815] gb|ACC75684.1| xylulokinase [Burkholderia phymatum STM815] Length = 486 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 299/410 (72%), Positives = 338/410 (82%), Gaps = 3/410 (0%) Query: 1 MHGATLLDRNGNVLRPAILWNDMRAHAECVELEALVPDAPAITGNRAMPGFTAPKLLWLS 60 MHGATLLDR+GNVLRPAILWND RA+AECVELEALVPD+ ITGN AMPGFTAPKLLWLS Sbjct: 80 MHGATLLDRSGNVLRPAILWNDTRAYAECVELEALVPDSRTITGNLAMPGFTAPKLLWLS 139 Query: 61 KYEPAVYRAIDKVLLPKDYLGWKLTGEFVSEMSDAAGTLWLDVAQRDWSDRMLAATGLDR 120 KYEPAVYR++ KVLLPKDY+ WKLTGEFVS+MSDA+GTLWLDVA+RDWSDRML+ATGL R Sbjct: 140 KYEPAVYRSVHKVLLPKDYVAWKLTGEFVSDMSDASGTLWLDVARRDWSDRMLSATGLSR 199 Query: 121 SHMPRLVEGSDEAGHLREELRREWGINGPVVVAGGAGDNAASAVGIGVIQAGDAFLSLGS 180 +MPRLVEGS+ A LR+ELRREWG++GPVVV GGAGDNAASAVGIGV+ GDAFLSLG+ Sbjct: 200 DNMPRLVEGSEPAAQLRDELRREWGVSGPVVVCGGAGDNAASAVGIGVVNPGDAFLSLGT 259 Query: 181 SGVLFAATARHAPNPQQGVHAFCHCLPGQWHQMSVILSAAASLHWLSGVTARPVGELVAG 240 SGVLFA+TAR+APNP + VHAFCHCLP QWHQMSVILSAAASL WLS + V ELV Sbjct: 260 SGVLFASTARYAPNPGEAVHAFCHCLPDQWHQMSVILSAAASLEWLSALLKTDVSELVGI 319 Query: 241 AERLTATQQAQAPLFLPYLNGERTPHNDATAKGVLFGMTPAHETAHLAYAVMEGVAFAMA 300 A + + P+FLPYLNGERTPHNDA+AKGV FGMT +H HLAY+VMEGVAFAMA Sbjct: 320 APK---GRDGNPPIFLPYLNGERTPHNDASAKGVFFGMTGSHRAEHLAYSVMEGVAFAMA 376 Query: 301 DGYAALQAAGTTLESAAFVGGGSRSAFWGELCATALGMPLRRHAGAEVGAALGAARLGRL 360 DGYAAL+ AGT L A+FVGGGSRSAFWG LCATALG PL H G+ +GAALGAARL RL Sbjct: 377 DGYAALRGAGTELHGASFVGGGSRSAFWGRLCATALGCPLHLHEGSNIGAALGAARLARL 436 Query: 361 ARTGEDAASVCVPPEVLEWYRPDTARQAQLQRRLAQYRRLYRSLADEFIA 410 A +D ++VC P VL+ + P + +A Q R +YRRLY SL EF A Sbjct: 437 ALGKDDVSAVCSMPLVLDTFEPQSDARASTQERYERYRRLYVSLKAEFQA 486 >ref|YP_003609019.1| xylulokinase [Burkholderia sp. CCGE1002] gb|ADG19508.1| xylulokinase [Burkholderia sp. CCGE1002] Length = 486 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 294/408 (72%), Positives = 340/408 (83%), Gaps = 3/408 (0%) Query: 1 MHGATLLDRNGNVLRPAILWNDMRAHAECVELEALVPDAPAITGNRAMPGFTAPKLLWLS 60 MHGATLLDR+GNVLRPAILWND RA+AECVELEALVPD+ ITGN+AMPGFTAPKLLWLS Sbjct: 80 MHGATLLDRSGNVLRPAILWNDTRAYAECVELEALVPDSRNITGNQAMPGFTAPKLLWLS 139 Query: 61 KYEPAVYRAIDKVLLPKDYLGWKLTGEFVSEMSDAAGTLWLDVAQRDWSDRMLAATGLDR 120 KYEPAV+RA+ KVLLPKDY+ W+LTGEF S+MSDA+GTLWLDVA+RDWSDRML+A G+ R Sbjct: 140 KYEPAVFRAVHKVLLPKDYIAWRLTGEFTSDMSDASGTLWLDVAKRDWSDRMLSAIGMSR 199 Query: 121 SHMPRLVEGSDEAGHLREELRREWGINGPVVVAGGAGDNAASAVGIGVIQAGDAFLSLGS 180 +MPRLVEGS+ A LR EL+REW ++G V V GGAGDNAASA+GIGV + GDAFLSLG+ Sbjct: 200 ENMPRLVEGSEPAAQLRGELQREWCLDGSVTVCGGAGDNAASAIGIGVARPGDAFLSLGT 259 Query: 181 SGVLFAATARHAPNPQQGVHAFCHCLPGQWHQMSVILSAAASLHWLSGVTARPVGELVAG 240 SGVLFAAT +APNP Q VHAFCHC+P QWHQMSVILSAAASLHWLSG+ V EL+ Sbjct: 260 SGVLFAATQGYAPNPGQAVHAFCHCVPQQWHQMSVILSAAASLHWLSGLLKSSVAELI-- 317 Query: 241 AERLTATQQAQAPLFLPYLNGERTPHNDATAKGVLFGMTPAHETAHLAYAVMEGVAFAMA 300 E + Q A AP+FLPYLNGERTPHNDATAKG+ +GMT AH HLAY+VMEGVAFAMA Sbjct: 318 -EIAPSGQSATAPIFLPYLNGERTPHNDATAKGIFYGMTSAHGAQHLAYSVMEGVAFAMA 376 Query: 301 DGYAALQAAGTTLESAAFVGGGSRSAFWGELCATALGMPLRRHAGAEVGAALGAARLGRL 360 DGYAALQAAGTTL +A+FVGGGSRSAFWG+LCA+ALG L R+ G+E+GAALGA RL RL Sbjct: 377 DGYAALQAAGTTLSAASFVGGGSRSAFWGKLCASALGFELNRNEGSELGAALGAGRLARL 436 Query: 361 ARTGEDAASVCVPPEVLEWYRPDTARQAQLQRRLAQYRRLYRSLADEF 408 A E A+V P V+E Y P+ A ++ L+ R A+YRRLY++L EF Sbjct: 437 ACERETLAAVVKAPAVVERYEPEAALRSVLRDRFARYRRLYQALKSEF 484 >ref|ZP_02881811.1| xylulokinase [Burkholderia graminis C4D1M] gb|EDT12056.1| xylulokinase [Burkholderia graminis C4D1M] Length = 486 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 294/408 (72%), Positives = 331/408 (81%), Gaps = 3/408 (0%) Query: 1 MHGATLLDRNGNVLRPAILWNDMRAHAECVELEALVPDAPAITGNRAMPGFTAPKLLWLS 60 MHGATLLDR G VLRPAILWND RA AECVELEALVP++ +ITGN AMPGFTAPKLLWLS Sbjct: 80 MHGATLLDRAGQVLRPAILWNDTRAAAECVELEALVPESRSITGNLAMPGFTAPKLLWLS 139 Query: 61 KYEPAVYRAIDKVLLPKDYLGWKLTGEFVSEMSDAAGTLWLDVAQRDWSDRMLAATGLDR 120 KYEPAV+RA KVLLPKDYL W+LTGEFVS+MSDA+GTLWLDVA+RDWSDRML ATGL R Sbjct: 140 KYEPAVFRAAHKVLLPKDYLAWRLTGEFVSDMSDASGTLWLDVAKRDWSDRMLHATGLSR 199 Query: 121 SHMPRLVEGSDEAGHLREELRREWGINGPVVVAGGAGDNAASAVGIGVIQAGDAFLSLGS 180 HMPRLVEGSD A L + LRREWGI PV++ GGAGDNAASA+G+GV +AG AFLSLG+ Sbjct: 200 EHMPRLVEGSDAAAQLNDTLRREWGIANPVLLCGGAGDNAASAIGMGVAEAGSAFLSLGT 259 Query: 181 SGVLFAATARHAPNPQQGVHAFCHCLPGQWHQMSVILSAAASLHWLSGVTARPVGELVAG 240 SGVLFA T R APNP Q VHAFCHCLP +WHQMSVILSAA+SL WLSGV V EL A Sbjct: 260 SGVLFAGTDRFAPNPAQAVHAFCHCLPDRWHQMSVILSAASSLSWLSGVLKTDVAELAAS 319 Query: 241 AERLTATQQAQAPLFLPYLNGERTPHNDATAKGVLFGMTPAHETAHLAYAVMEGVAFAMA 300 AE A APLFLPYL+GERTPHNDA AKGV +G+T AH A LAY+VMEGVAFAMA Sbjct: 320 AETADAR---GAPLFLPYLSGERTPHNDANAKGVFWGLTGAHTNADLAYSVMEGVAFAMA 376 Query: 301 DGYAALQAAGTTLESAAFVGGGSRSAFWGELCATALGMPLRRHAGAEVGAALGAARLGRL 360 DGYAALQ AGTTL++A+F+GGGSRS FW +LCATA G+ +RRH G +VG ALGAARL RL Sbjct: 377 DGYAALQGAGTTLDTASFIGGGSRSRFWAQLCATATGVAMRRHQGGDVGGALGAARLARL 436 Query: 361 ARTGEDAASVCVPPEVLEWYRPDTARQAQLQRRLAQYRRLYRSLADEF 408 A T E A VC P +E PD A++ ++ RLA+YRR+Y +L DEF Sbjct: 437 AVTKESVAQVCTSPATIEVCAPDAAQRGLIEERLARYRRIYAALKDEF 484 >ref|YP_003909061.1| xylulokinase [Burkholderia sp. CCGE1003] gb|ADN59770.1| xylulokinase [Burkholderia sp. CCGE1003] Length = 486 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 291/408 (71%), Positives = 332/408 (81%), Gaps = 3/408 (0%) Query: 1 MHGATLLDRNGNVLRPAILWNDMRAHAECVELEALVPDAPAITGNRAMPGFTAPKLLWLS 60 MHGATLLDR G VLRPAILWND RA AECVELEALVP++ +ITGN AMPGFTAPKLLWLS Sbjct: 80 MHGATLLDRAGQVLRPAILWNDTRAFAECVELEALVPESRSITGNLAMPGFTAPKLLWLS 139 Query: 61 KYEPAVYRAIDKVLLPKDYLGWKLTGEFVSEMSDAAGTLWLDVAQRDWSDRMLAATGLDR 120 KYEPAV+RA KVLLPKDY+ W+LTGEFVSEMSDA+GTLWLDVA+RDWSDRMLAATGL R Sbjct: 140 KYEPAVFRAAHKVLLPKDYVAWRLTGEFVSEMSDASGTLWLDVAKRDWSDRMLAATGLSR 199 Query: 121 SHMPRLVEGSDEAGHLREELRREWGINGPVVVAGGAGDNAASAVGIGVIQAGDAFLSLGS 180 HMPRLVEGS+ A L + LRREWGI PV++ GGAGDNAASA+G+GV+ AG AFLSLG+ Sbjct: 200 EHMPRLVEGSEAAAQLNDTLRREWGIASPVLLCGGAGDNAASAIGMGVVDAGSAFLSLGT 259 Query: 181 SGVLFAATARHAPNPQQGVHAFCHCLPGQWHQMSVILSAAASLHWLSGVTARPVGELVAG 240 SGVLFA T R APNP Q VHAFCHCLP +WHQMSVILSAA+SL WLSGV + V E+ Sbjct: 260 SGVLFAGTDRFAPNPAQAVHAFCHCLPDRWHQMSVILSAASSLAWLSGVLKKDVVEVAGL 319 Query: 241 AERLTATQQAQAPLFLPYLNGERTPHNDATAKGVLFGMTPAHETAHLAYAVMEGVAFAMA 300 AE+ A APLFLPYL+GERTPHNDA AKGV +G+T AH A LAY+VMEGVAFAMA Sbjct: 320 AEQADAR---GAPLFLPYLSGERTPHNDANAKGVFWGLTGAHSEADLAYSVMEGVAFAMA 376 Query: 301 DGYAALQAAGTTLESAAFVGGGSRSAFWGELCATALGMPLRRHAGAEVGAALGAARLGRL 360 DGYAALQ+AGT L++A+F+GGGSRS FW +LCATA G+ +RRH G +VGAALGAARL RL Sbjct: 377 DGYAALQSAGTALDTASFIGGGSRSRFWAKLCATATGVAMRRHHGGDVGAALGAARLARL 436 Query: 361 ARTGEDAASVCVPPEVLEWYRPDTARQAQLQRRLAQYRRLYRSLADEF 408 A T E+ VC P +E PD A + + RLA+YRR+Y +L DEF Sbjct: 437 AVTKENVNEVCTSPATIEICEPDAAHRTVTEDRLARYRRIYAALKDEF 484