BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4270.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776787.1| AraC family transcription regulator protein ... 385 e-105 ref|ZP_02881810.1| transcriptional regulator, AraC family [Burkh... 374 e-101 ref|YP_003909060.1| AraC family transcriptional regulator [Burkh... 368 e-100 ref|ZP_02466549.1| transcriptional regulator, AraC family protei... 365 6e-99 ref|ZP_02384554.1| transcriptional regulator, AraC family protei... 362 6e-98 >ref|YP_003776787.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64879.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 189/293 (64%), Positives = 223/293 (76%) Query: 31 MSPDLELVHTRQDESFRAWVHDYPHMVAKWHFHPEYEVHVITASSGKFFVGDFIGDFGPG 90 MSPDLELVHTRQD+SFRAWVHDYPH VAKWHFHPEYEVHVITASSGKFFVGDFIGDFGPG Sbjct: 1 MSPDLELVHTRQDQSFRAWVHDYPHTVAKWHFHPEYEVHVITASSGKFFVGDFIGDFGPG 60 Query: 91 NLVLLGPNLPHNWISDVAPGEQVPERGIIVQFPGEFINHGIHAFDELHELENLLLDAQAG 150 NLVL GPNLPHNW+S++ +QVP R +++QF F + A EL L+ +L A G Sbjct: 61 NLVLTGPNLPHNWVSNLGAHQQVPARDLVLQFSRPFAERVVGAIPELSPLQEMLDGAARG 120 Query: 151 LVFTPPTGAAALPIMRTLLTTRGCKRIQLFLALLDLMTADDGRVALASHGYIPDALAYMS 210 L F GA+ P+M+ L G +R+ L +++L+ + + R LA GY +A +MS Sbjct: 121 LQFPDALGASITPLMQELAQASGARRVVLMMSVLERLASCPERKPLAGPGYDLNAQRHMS 180 Query: 211 SRLNHVLRFIAENLDTDLRESSLAELTQQSASAFSRSFRKHTGMSCIQYINRLRLNEACE 270 S LN VL I +NL +LRE+ LAEL S S+F+R F++HTG + IQY N LRLNEACE Sbjct: 181 STLNQVLSCIRQNLGGNLRETDLAELAGMSVSSFTRFFKRHTGCTFIQYQNGLRLNEACE 240 Query: 271 LLMCTELSVTEVCYRVGFNNLSNFNRQFLAHKGMPPSRFRALHRLNDEVRAVA 323 LLMCTELSVTEVCYRVGFNNLSNFNRQFLA KGMPPSRFR+LHRLND+VRAVA Sbjct: 241 LLMCTELSVTEVCYRVGFNNLSNFNRQFLASKGMPPSRFRSLHRLNDDVRAVA 293 >ref|ZP_02881810.1| transcriptional regulator, AraC family [Burkholderia graminis C4D1M] gb|EDT12055.1| transcriptional regulator, AraC family [Burkholderia graminis C4D1M] Length = 300 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 173/289 (59%), Positives = 219/289 (75%) Query: 31 MSPDLELVHTRQDESFRAWVHDYPHMVAKWHFHPEYEVHVITASSGKFFVGDFIGDFGPG 90 M+PDLELVHTR+DESFRAWVHDYPH VAKWHFHPEYE+HVI ASSGKFFVGDFIGDF PG Sbjct: 1 MNPDLELVHTRRDESFRAWVHDYPHTVAKWHFHPEYEIHVIRASSGKFFVGDFIGDFAPG 60 Query: 91 NLVLLGPNLPHNWISDVAPGEQVPERGIIVQFPGEFINHGIHAFDELHELENLLLDAQAG 150 NLV+ GPNLPHNWIS++ E VP R +++QF + I AF+ELH + +L+ DA G Sbjct: 61 NLVITGPNLPHNWISEIGERETVPSRDVVLQFSRDAIERMAAAFNELHPIVSLVDDAARG 120 Query: 151 LVFTPPTGAAALPIMRTLLTTRGCKRIQLFLALLDLMTADDGRVALASHGYIPDALAYMS 210 + F G A P+M L + GC+R++L +++ D +++ + R LA Y +A YM Sbjct: 121 IQFPDAVGLAIAPMMMELAASHGCRRVELLMSIFDRLSSCNERTLLAGPAYDVNAHRYMQ 180 Query: 211 SRLNHVLRFIAENLDTDLRESSLAELTQQSASAFSRSFRKHTGMSCIQYINRLRLNEACE 270 S +N VL +I +NL LRE+ +AEL S S F+R FR+HTG + +QY+NRLR+NEACE Sbjct: 181 STINQVLSYIQQNLPGTLREADVAELAGMSVSTFTRFFRRHTGCTFVQYLNRLRINEACE 240 Query: 271 LLMCTELSVTEVCYRVGFNNLSNFNRQFLAHKGMPPSRFRALHRLNDEV 319 LLMC+ LSVT++CYRVGFNNLSNFNRQFL+ KGMPPS+FRALH+LN+ V Sbjct: 241 LLMCSTLSVTDICYRVGFNNLSNFNRQFLSTKGMPPSKFRALHQLNEHV 289 >ref|YP_003909060.1| AraC family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN59769.1| transcriptional regulator, AraC family [Burkholderia sp. CCGE1003] Length = 292 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 172/291 (59%), Positives = 215/291 (73%) Query: 31 MSPDLELVHTRQDESFRAWVHDYPHMVAKWHFHPEYEVHVITASSGKFFVGDFIGDFGPG 90 M+PDLELVHTR+DESFRAW HDYPH VAKWHFHPEYE+HVI AS+GKFFVGDFIGDF PG Sbjct: 1 MNPDLELVHTRRDESFRAWAHDYPHTVAKWHFHPEYEIHVIRASTGKFFVGDFIGDFAPG 60 Query: 91 NLVLLGPNLPHNWISDVAPGEQVPERGIIVQFPGEFINHGIHAFDELHELENLLLDAQAG 150 NLV+ GPNLPHNWIS+V E VP R +++QF + + + AF ELH + L+ DA G Sbjct: 61 NLVITGPNLPHNWISEVGERETVPSRDVVLQFSRDAVERMVAAFPELHSIVGLIDDAARG 120 Query: 151 LVFTPPTGAAALPIMRTLLTTRGCKRIQLFLALLDLMTADDGRVALASHGYIPDALAYMS 210 + F G A P+M L + GC+R++L +++ D +++ R LA Y +A YM Sbjct: 121 IQFPDAVGLAIAPMMLELAVSHGCRRVELLMSIFDRLSSCTERRLLAGPAYDVNAHRYMQ 180 Query: 211 SRLNHVLRFIAENLDTDLRESSLAELTQQSASAFSRSFRKHTGMSCIQYINRLRLNEACE 270 S +N VL +I +NL LRE+ +AEL S S F+R FR+HTG + +QY NRLR+NEACE Sbjct: 181 STINQVLSYIQQNLPGTLREADVAELAGMSVSTFTRFFRRHTGCTFVQYQNRLRINEACE 240 Query: 271 LLMCTELSVTEVCYRVGFNNLSNFNRQFLAHKGMPPSRFRALHRLNDEVRA 321 LLMC+ LSVTE+CYRVGFNNLSNFNRQFLA K MPPS+FRALH+LN+ + A Sbjct: 241 LLMCSTLSVTEICYRVGFNNLSNFNRQFLATKAMPPSKFRALHQLNEHMIA 291 >ref|ZP_02466549.1| transcriptional regulator, AraC family protein [Burkholderia thailandensis MSMB43] Length = 300 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 171/291 (58%), Positives = 217/291 (74%) Query: 26 ARRQSMSPDLELVHTRQDESFRAWVHDYPHMVAKWHFHPEYEVHVITASSGKFFVGDFIG 85 A+ + M+PDLE+V TR+DESFRAW HDYPH VAKWHFHPEYE+H+I AS GKFFVGD IG Sbjct: 10 AQERQMNPDLEIVPTRRDESFRAWSHDYPHTVAKWHFHPEYEIHLIQASRGKFFVGDHIG 69 Query: 86 DFGPGNLVLLGPNLPHNWISDVAPGEQVPERGIIVQFPGEFINHGIHAFDELHELENLLL 145 DF PGNLV+ GPNLPHNWIS++ PGE+VP R +++QF E + AF EL + +L+ Sbjct: 70 DFAPGNLVVTGPNLPHNWISELGPGERVPSRDVVLQFSREAAEKMVAAFAELQPVLDLID 129 Query: 146 DAQAGLVFTPPTGAAALPIMRTLLTTRGCKRIQLFLALLDLMTADDGRVALASHGYIPDA 205 +A G+ F G A P+M L + GC+R+++ ++L D +++ R LA GY DA Sbjct: 130 EASRGVQFPDEVGLAVAPLMIELASAHGCRRVEVLMSLFDRLSSCAARRMLAGPGYRIDA 189 Query: 206 LAYMSSRLNHVLRFIAENLDTDLRESSLAELTQQSASAFSRSFRKHTGMSCIQYINRLRL 265 YMSS +N VL ++ +NL LRE+ +AE S S F+R FR+HTG + +QY+NRLR+ Sbjct: 190 QHYMSSTINQVLAYLRQNLPGTLREADVAEFAGMSVSTFTRFFRRHTGSTFVQYLNRLRI 249 Query: 266 NEACELLMCTELSVTEVCYRVGFNNLSNFNRQFLAHKGMPPSRFRALHRLN 316 NEACELLMC+ LSVT++CYRVGFNNLSNFNRQFLA KGMPPSRFRALHRLN Sbjct: 250 NEACELLMCSALSVTDICYRVGFNNLSNFNRQFLAMKGMPPSRFRALHRLN 300 >ref|ZP_02384554.1| transcriptional regulator, AraC family protein [Burkholderia thailandensis Bt4] ref|ZP_05590754.1| AraC family transcriptional regulator [Burkholderia thailandensis E264] Length = 344 Score = 362 bits (928), Expect = 6e-98, Method: Composition-based stats. Identities = 169/292 (57%), Positives = 217/292 (74%) Query: 26 ARRQSMSPDLELVHTRQDESFRAWVHDYPHMVAKWHFHPEYEVHVITASSGKFFVGDFIG 85 A+ + M+PDLE+V TR+DESFRAW HDYPH VAKWHFHPEYE+H+I S GKFFVGD+IG Sbjct: 10 AQERQMNPDLEIVPTRRDESFRAWSHDYPHTVAKWHFHPEYEIHLIQGSRGKFFVGDYIG 69 Query: 86 DFGPGNLVLLGPNLPHNWISDVAPGEQVPERGIIVQFPGEFINHGIHAFDELHELENLLL 145 DF PGNLV+ GPNLPHNWIS++ PGE+VP R +++QF + + AF EL + +L+ Sbjct: 70 DFAPGNLVVTGPNLPHNWISELGPGERVPSRDVVLQFSRDAAEKMVAAFAELQPVLDLID 129 Query: 146 DAQAGLVFTPPTGAAALPIMRTLLTTRGCKRIQLFLALLDLMTADDGRVALASHGYIPDA 205 +A G+ F G A P+M L + GC+R+++ +AL D + + R LA GY DA Sbjct: 130 EASRGVQFPDEVGLAVAPLMVELASAHGCRRVEVLMALFDRLASCAARRPLAGPGYRIDA 189 Query: 206 LAYMSSRLNHVLRFIAENLDTDLRESSLAELTQQSASAFSRSFRKHTGMSCIQYINRLRL 265 YMSS +N VL ++ +NL LRE+ +AE S S F+R FR+HTG + +QY+NRLR+ Sbjct: 190 QHYMSSTINQVLAYLRQNLPGALREADVAEFAGMSVSTFTRFFRRHTGSTFVQYLNRLRI 249 Query: 266 NEACELLMCTELSVTEVCYRVGFNNLSNFNRQFLAHKGMPPSRFRALHRLND 317 NEACELLMC+ L+VT++CYRVGFNNLSNFNRQFLA KGMPPSRFRALHRLN+ Sbjct: 250 NEACELLMCSALNVTDICYRVGFNNLSNFNRQFLAMKGMPPSRFRALHRLNE 301