BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4269.p (406 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum... 639 0.0 ref|YP_001862732.1| ABC transporter related [Burkholderia phymat... 530 e-148 ref|ZP_02881809.1| ABC transporter related [Burkholderia gramini... 514 e-144 ref|YP_003609021.1| ABC transporter [Burkholderia sp. CCGE1002] ... 511 e-143 ref|YP_003909059.1| ABC transporter-like protein [Burkholderia s... 506 e-141 >ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ64878.1| ABC-type sugar transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 406 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 342/406 (84%), Positives = 358/406 (88%) Query: 1 MADIRCQGLSKHYAGGPPVLHPLDLAIGDGEFVVLLGPSGCGKSTMLRMIAGLEEISGGT 60 MADI CQ L+KHYAGGPPVLHPLDL IGDGEFVVLLGPSGCGKSTMLRMIAGLE+ISGGT Sbjct: 1 MADIHCQALAKHYAGGPPVLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLEDISGGT 60 Query: 61 LSIGGKVVNALPARDRNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPADEIDRRVREVAA 120 L IGG VVN LPAR+RNVAMVFQNYALYPHM+VYDNIAFGLRRLKRPA EIDRRVREVAA Sbjct: 61 LRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRVREVAA 120 Query: 121 MLNLDALLDRKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 +LNL+ALL+RKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL Sbjct: 121 LLNLEALLERKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMQGGQIVQAGSPAELYRYPRTLFAAGFIGTPAM 240 HQRLRTTTVYVTHDQLEAMTLADRVILMQ G+IVQAGSPAELYRYPR LFAAGFIGTPAM Sbjct: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYRYPRNLFAAGFIGTPAM 240 Query: 241 NFLDGVVERDGATLSVRCEDQRWILQDERFSRLMPGMSVKLAVRPDYVRMAGEQDAAHSL 300 NFL G V+R L + QRW L ERFSRL M+VKLAVRPD+VR+AGE++ A SL Sbjct: 241 NFLSGTVQRQDGQLFIETAHQRWALTGERFSRLRHAMAVKLAVRPDHVRIAGEREPAASL 300 Query: 301 TCAVDVELVEILGADALLTTRWGAQTLTALVSAQHLPQAGQRLHLAFDQHALHVFDVHSG 360 TC V VELVEILGADALLTTR G QTLTALV A LPQ G L LA DQH LHVFDV SG Sbjct: 301 TCPVSVELVEILGADALLTTRCGDQTLTALVPADRLPQPGATLTLALDQHELHVFDVESG 360 Query: 361 ENLSLPPAAFAAGGQDDGPHGKETKHESGSGAGPYPPGRIVQGVGA 406 ENLSLP AA A G DDGPHGKETKHESGSGAGPYPPG IVQG+GA Sbjct: 361 ENLSLPDAALTAPGSDDGPHGKETKHESGSGAGPYPPGPIVQGLGA 406 >ref|YP_001862732.1| ABC transporter related [Burkholderia phymatum STM815] gb|ACC75686.1| ABC transporter related [Burkholderia phymatum STM815] Length = 386 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 271/367 (73%), Positives = 301/367 (82%) Query: 1 MADIRCQGLSKHYAGGPPVLHPLDLAIGDGEFVVLLGPSGCGKSTMLRMIAGLEEISGGT 60 MA+I C+GL+KHY GGPPVLHPLDL I DGEFVVLLGPSGCGKSTMLRMIAGLE ISGG Sbjct: 1 MANIVCKGLTKHYDGGPPVLHPLDLQIDDGEFVVLLGPSGCGKSTMLRMIAGLEGISGGA 60 Query: 61 LSIGGKVVNALPARDRNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPADEIDRRVREVAA 120 LSIG VVN +PAR+RNVAMVFQNYALYPHMNVYDNIAFGLRRLK P +EIDRRVREVA+ Sbjct: 61 LSIGATVVNDVPARERNVAMVFQNYALYPHMNVYDNIAFGLRRLKTPKEEIDRRVREVAS 120 Query: 121 MLNLDALLDRKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 MLNLD LLDRKPRAMSGGQQQRAAIARA+IKTP VFLFDEPLSNLDAKLRAQLR DIKRL Sbjct: 121 MLNLDTLLDRKPRAMSGGQQQRAAIARAMIKTPDVFLFDEPLSNLDAKLRAQLRTDIKRL 180 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMQGGQIVQAGSPAELYRYPRTLFAAGFIGTPAM 240 HQRL+TTTVYVTHDQLEAMTLADRVILM+GG+I QAG+P+ELY YPRTLFAAGFIGTPAM Sbjct: 181 HQRLQTTTVYVTHDQLEAMTLADRVILMRGGRIEQAGTPSELYHYPRTLFAAGFIGTPAM 240 Query: 241 NFLDGVVERDGATLSVRCEDQRWILQDERFSRLMPGMSVKLAVRPDYVRMAGEQDAAHSL 300 NFL G + R +SVR D+ WIL RF+ L G VK+A+RP+YVR+A A SL Sbjct: 241 NFLPGTIGRSSGAVSVRALDETWILSGSRFASLSAGQDVKVAIRPNYVRIAEGSGLADSL 300 Query: 301 TCAVDVELVEILGADALLTTRWGAQTLTALVSAQHLPQAGQRLHLAFDQHALHVFDVHSG 360 VELVEILGADAL+T + +TAL+ + LP G R+ L D+ LHVFD + Sbjct: 301 KIRGVVELVEILGADALVTVDCSGERITALIPSDSLPPIGLRVTLEMDRRDLHVFDAKTE 360 Query: 361 ENLSLPP 367 ENL+L P Sbjct: 361 ENLTLAP 367 >ref|ZP_02881809.1| ABC transporter related [Burkholderia graminis C4D1M] gb|EDT12054.1| ABC transporter related [Burkholderia graminis C4D1M] Length = 391 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 265/380 (69%), Positives = 302/380 (79%) Query: 1 MADIRCQGLSKHYAGGPPVLHPLDLAIGDGEFVVLLGPSGCGKSTMLRMIAGLEEISGGT 60 MA I C+GL+K Y GGPPVLHPLD+ I DGEFVVLLGPSGCGKSTMLRMIAGLE ISGG Sbjct: 1 MAKIVCKGLTKRYDGGPPVLHPLDMEIDDGEFVVLLGPSGCGKSTMLRMIAGLEGISGGD 60 Query: 61 LSIGGKVVNALPARDRNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPADEIDRRVREVAA 120 L+IG KVVN LPAR+RNVAMVFQNYALYPHM VY+N+AFGLRRLK PA EIDRRVREVAA Sbjct: 61 LAIGDKVVNDLPARERNVAMVFQNYALYPHMTVYENVAFGLRRLKVPAAEIDRRVREVAA 120 Query: 121 MLNLDALLDRKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 MLNLDALLDRKPRAMSGGQQQRAAIARA+IKTP VFLFDEPLSNLDAKLRAQLRGDIKRL Sbjct: 121 MLNLDALLDRKPRAMSGGQQQRAAIARAMIKTPEVFLFDEPLSNLDAKLRAQLRGDIKRL 180 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMQGGQIVQAGSPAELYRYPRTLFAAGFIGTPAM 240 HQRL+TTTVYVTHDQLEAMTLADRVILM+GG+I QAG+P++LY +P TLFAAGFIGTPAM Sbjct: 181 HQRLKTTTVYVTHDQLEAMTLADRVILMRGGRIEQAGTPSDLYHFPHTLFAAGFIGTPAM 240 Query: 241 NFLDGVVERDGATLSVRCEDQRWILQDERFSRLMPGMSVKLAVRPDYVRMAGEQDAAHSL 300 NF+ G +ER G T V+ + QRW L RF++L G +VKLA+RP+Y+++A D L Sbjct: 241 NFMSGTIERTGDTCFVQVQGQRWTLAGPRFAKLQSGQAVKLAIRPNYLKVASADDDIAML 300 Query: 301 TCAVDVELVEILGADALLTTRWGAQTLTALVSAQHLPQAGQRLHLAFDQHALHVFDVHSG 360 VEL+E+LGA+AL+T + + L ALV A LP + F LHVFD + Sbjct: 301 KLRGKVELIELLGAEALVTLEFAGERLAALVPASELPALDSVVTFQFKLADLHVFDAQTE 360 Query: 361 ENLSLPPAAFAAGGQDDGPH 380 +N+SLP A A D H Sbjct: 361 QNVSLPVAHMRATSPVDPLH 380 >ref|YP_003609021.1| ABC transporter [Burkholderia sp. CCGE1002] gb|ADG19510.1| ABC transporter related protein [Burkholderia sp. CCGE1002] Length = 389 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 265/373 (71%), Positives = 299/373 (80%) Query: 1 MADIRCQGLSKHYAGGPPVLHPLDLAIGDGEFVVLLGPSGCGKSTMLRMIAGLEEISGGT 60 MA+I C+GL+K Y GG PVLHPLDL I +GEFVVLLGPSGCGKSTMLRMIAGLEEISGG+ Sbjct: 1 MANIVCEGLTKQYDGGQPVLHPLDLHIDEGEFVVLLGPSGCGKSTMLRMIAGLEEISGGS 60 Query: 61 LSIGGKVVNALPARDRNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPADEIDRRVREVAA 120 LSIGG+VVN +PAR+RNVAMVFQNYALYPHM+VY+NIAFGLRRLK P EIDRRVREVAA Sbjct: 61 LSIGGRVVNDVPARERNVAMVFQNYALYPHMSVYENIAFGLRRLKTPTAEIDRRVREVAA 120 Query: 121 MLNLDALLDRKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 MLNLDALL+RKPRAMSGGQQQRAAIARA+IKTPSVFLFDEPLSNLDAKLRAQLR DIKRL Sbjct: 121 MLNLDALLERKPRAMSGGQQQRAAIARAMIKTPSVFLFDEPLSNLDAKLRAQLRTDIKRL 180 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMQGGQIVQAGSPAELYRYPRTLFAAGFIGTPAM 240 HQRL+TTTVYVTHDQLEAMTLADRVILM+GG I Q G+P ELYRYPRT+F AGFIGTPAM Sbjct: 181 HQRLKTTTVYVTHDQLEAMTLADRVILMRGGHIEQEGTPTELYRYPRTIFGAGFIGTPAM 240 Query: 241 NFLDGVVERDGATLSVRCEDQRWILQDERFSRLMPGMSVKLAVRPDYVRMAGEQDAAHSL 300 NFLDG V+ ++V W L+ RF RL G ++KLAVRP++VR+ L Sbjct: 241 NFLDGSVQCTSERVTVSSAAGHWQLRANRFRRLQDGQTIKLAVRPNFVRIPESGTTDGDL 300 Query: 301 TCAVDVELVEILGADALLTTRWGAQTLTALVSAQHLPQAGQRLHLAFDQHALHVFDVHSG 360 ELVE+LGA+AL+T + +TALV A P G + LAF + LHVFDV +G Sbjct: 301 VLNGAAELVEVLGAEALITVDCSGERVTALVPASAAPHTGDHVKLAFSERDLHVFDVATG 360 Query: 361 ENLSLPPAAFAAG 373 EN+SL A AA Sbjct: 361 ENVSLEAADEAAA 373 >ref|YP_003909059.1| ABC transporter-like protein [Burkholderia sp. CCGE1003] gb|ADN59768.1| ABC transporter related protein [Burkholderia sp. CCGE1003] Length = 391 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 266/387 (68%), Positives = 304/387 (78%), Gaps = 6/387 (1%) Query: 1 MADIRCQGLSKHYAGGPPVLHPLDLAIGDGEFVVLLGPSGCGKSTMLRMIAGLEEISGGT 60 MA I C+GL+K Y GGPPVLHPLD+ I D EFVVLLGPSGCGKSTMLRMIAGLE I+GG Sbjct: 1 MAKIVCRGLTKRYDGGPPVLHPLDMEIRDSEFVVLLGPSGCGKSTMLRMIAGLEAITGGE 60 Query: 61 LSIGGKVVNALPARDRNVAMVFQNYALYPHMNVYDNIAFGLRRLKRPADEIDRRVREVAA 120 L+IG VVN LPAR+RNVAMVFQNYALYPHM VYDN+AFGLRRLK PA EIDRRVREVAA Sbjct: 61 LAIGDTVVNDLPARERNVAMVFQNYALYPHMTVYDNVAFGLRRLKVPAAEIDRRVREVAA 120 Query: 121 MLNLDALLDRKPRAMSGGQQQRAAIARAIIKTPSVFLFDEPLSNLDAKLRAQLRGDIKRL 180 MLNLDALLDRKPRAMSGGQQQRAAIARA+IKTP VFLFDEPLSNLDAKLRAQLRGDIKRL Sbjct: 121 MLNLDALLDRKPRAMSGGQQQRAAIARAMIKTPEVFLFDEPLSNLDAKLRAQLRGDIKRL 180 Query: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMQGGQIVQAGSPAELYRYPRTLFAAGFIGTPAM 240 HQRLRTTTVYVTHDQLEAMTLADRVILM+GG+I QAG+P++LY +PRTLFAAGFIGTPA+ Sbjct: 181 HQRLRTTTVYVTHDQLEAMTLADRVILMRGGRIEQAGTPSDLYHFPRTLFAAGFIGTPAI 240 Query: 241 NFLDGVVERDGATLSVRCEDQRWILQDERFSRLMPGMSVKLAVRPDYVRMAGEQDAAHSL 300 N + G +ER G T V+ + QRW L RF+ L +VKLA+RP+Y+++A D + SL Sbjct: 241 NVISGTIERTGETCFVQAQGQRWALPGPRFAGLQDRQAVKLAIRPNYLKVASADDESGSL 300 Query: 301 TCAVDVELVEILGADALLTTRWGAQTLTALVSAQHLPQAGQRLHLAFDQHALHVFDVHSG 360 VEL+E+LGA+AL+T G + L ALV A LP+ + F LHVFD + Sbjct: 301 RLRGKVELIELLGAEALVTFESGGERLAALVPAGELPELNSVVTFQFKIADLHVFDAQTE 360 Query: 361 ENLSLPPAA------FAAGGQDDGPHG 381 +N+SLP A A+ QD G G Sbjct: 361 QNVSLPVAENTGTTHAASSHQDAGVQG 387