BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4267.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776784.1| sugar ABC transporter permease [Herbaspirill... 439 e-121 ref|YP_001862734.1| binding-protein-dependent transport systems ... 396 e-108 ref|YP_003609023.1| binding-protein-dependent transporters inner... 395 e-108 ref|YP_003909057.1| binding-protein-dependent transport systems ... 390 e-106 ref|ZP_02881807.1| binding-protein-dependent transport systems i... 387 e-105 >ref|YP_003776784.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64876.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 270 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 261/270 (96%), Positives = 265/270 (98%) Query: 1 MGRLIARCAVWGVGILLVLVAVFPLLWALLNSLKTLLDIVTPTPRFLFTPTLDNYRQVIG 60 MGRLI RCAVWGVGI+LVLVAVFPLLWALLNS+KTLLDIVTPTPRFLFTPTL+NYRQVIG Sbjct: 1 MGRLITRCAVWGVGIVLVLVAVFPLLWALLNSVKTLLDIVTPTPRFLFTPTLENYRQVIG 60 Query: 61 SPEVLVGLTNSAVIVGSAVLLGTLMGVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVA 120 SPEVLVGLTNSAVIVGSAVLLGT MGVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVA Sbjct: 61 SPEVLVGLTNSAVIVGSAVLLGTFMGVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVA 120 Query: 121 IPLIAIWVDLGLYDTRFSMIATYLLTTLSTITWLSIPVFQRMPREIEEAATLDGYGPYAV 180 IPLIAIWVDLGLYDTRFSMI TYLLTTLSTITWLSIPVFQRMPREIEEAATLDGYGPYAV Sbjct: 121 IPLIAIWVDLGLYDTRFSMIVTYLLTTLSTITWLSIPVFQRMPREIEEAATLDGYGPYAV 180 Query: 181 FWKIALPNCAGTLLGGIIFSFVLVWNELMIALALTSSNSATLPVVASAFTSMGQEVPWGV 240 FWKIALPNCA TLLGGIIFSFVLVWNELMIALALTSSNSATLPVVASAFTSMGQEVPWGV Sbjct: 181 FWKIALPNCATTLLGGIIFSFVLVWNELMIALALTSSNSATLPVVASAFTSMGQEVPWGV 240 Query: 241 INASTVLLALPPLIFVGVLSRLLNSILTGK 270 INASTVLLALPPLIFVGVLSRLLNS+L GK Sbjct: 241 INASTVLLALPPLIFVGVLSRLLNSMLKGK 270 >ref|YP_001862734.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] gb|ACC75688.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] Length = 270 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 232/270 (85%), Positives = 247/270 (91%) Query: 1 MGRLIARCAVWGVGILLVLVAVFPLLWALLNSLKTLLDIVTPTPRFLFTPTLDNYRQVIG 60 MGRLI R V GI L LVAVFP+ WA+LNSLK LLDIVTPTPRF F+PTLDNYRQVI Sbjct: 1 MGRLIPRSTVLLFGIALALVAVFPVFWAVLNSLKNLLDIVTPTPRFFFSPTLDNYRQVIS 60 Query: 61 SPEVLVGLTNSAVIVGSAVLLGTLMGVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVA 120 SPEVL+ L NS+VIVG+AVLLGTL+GVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVA Sbjct: 61 SPEVLIALGNSSVIVGTAVLLGTLLGVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVA 120 Query: 121 IPLIAIWVDLGLYDTRFSMIATYLLTTLSTITWLSIPVFQRMPREIEEAATLDGYGPYAV 180 IPLIAIWVDLGLYDTR SMI TYLLTTLSTITWLSIPVFQR+PREIEEAATLDG GPY V Sbjct: 121 IPLIAIWVDLGLYDTRVSMIVTYLLTTLSTITWLSIPVFQRVPREIEEAATLDGCGPYEV 180 Query: 181 FWKIALPNCAGTLLGGIIFSFVLVWNELMIALALTSSNSATLPVVASAFTSMGQEVPWGV 240 FW++ALP CA TL+GGIIFSFVLVWNELMI LALTSS+SATLPVVASAFTS+GQEVPWGV Sbjct: 181 FWRVALPTCASTLMGGIIFSFVLVWNELMIGLALTSSHSATLPVVASAFTSLGQEVPWGV 240 Query: 241 INASTVLLALPPLIFVGVLSRLLNSILTGK 270 INASTVLLALPP+IFVG LSRLLNS+L GK Sbjct: 241 INASTVLLALPPIIFVGALSRLLNSMLKGK 270 >ref|YP_003609023.1| binding-protein-dependent transporters inner membrane component [Burkholderia sp. CCGE1002] gb|ADG19512.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1002] Length = 270 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 231/270 (85%), Positives = 251/270 (92%) Query: 1 MGRLIARCAVWGVGILLVLVAVFPLLWALLNSLKTLLDIVTPTPRFLFTPTLDNYRQVIG 60 MGRLI+R + +G+ L +VAVFP+LWA+LNSLK LLDIVTPTPRF+FTPTLDNYRQVI Sbjct: 1 MGRLISRSTILLLGVALAVVAVFPVLWAVLNSLKNLLDIVTPTPRFIFTPTLDNYRQVIS 60 Query: 61 SPEVLVGLTNSAVIVGSAVLLGTLMGVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVA 120 SPEVL+ L NS+VIVG+AV+LGTL+GVPAAYVIAR+HVP KRDIQFFLLSLRFLPPVA+A Sbjct: 61 SPEVLIALENSSVIVGTAVVLGTLLGVPAAYVIARFHVPAKRDIQFFLLSLRFLPPVAIA 120 Query: 121 IPLIAIWVDLGLYDTRFSMIATYLLTTLSTITWLSIPVFQRMPREIEEAATLDGYGPYAV 180 IPLIAIWVDLGLYDTRFSMI TYLLTTLSTITWLSIPVFQRMPREIEEAATLDGYGPYAV Sbjct: 121 IPLIAIWVDLGLYDTRFSMIVTYLLTTLSTITWLSIPVFQRMPREIEEAATLDGYGPYAV 180 Query: 181 FWKIALPNCAGTLLGGIIFSFVLVWNELMIALALTSSNSATLPVVASAFTSMGQEVPWGV 240 FW+IALP C TLLGGIIFSFVLVWNELM+ LALTSS SATLPVVASAFTS+GQEVPWGV Sbjct: 181 FWRIALPTCGNTLLGGIIFSFVLVWNELMMGLALTSSRSATLPVVASAFTSLGQEVPWGV 240 Query: 241 INASTVLLALPPLIFVGVLSRLLNSILTGK 270 INASTVLLALPP+IFVGVL RLLNS+L GK Sbjct: 241 INASTVLLALPPIIFVGVLIRLLNSMLKGK 270 >ref|YP_003909057.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1003] gb|ADN59766.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1003] Length = 270 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 225/270 (83%), Positives = 247/270 (91%) Query: 1 MGRLIARCAVWGVGILLVLVAVFPLLWALLNSLKTLLDIVTPTPRFLFTPTLDNYRQVIG 60 MGRLI+R W G++L +VAVFP+ WA LNSLK LLDIVTPTPRF+F+PTL+NYRQV+ Sbjct: 1 MGRLISRSTAWSFGLVLAVVAVFPIFWAFLNSLKNLLDIVTPTPRFIFSPTLENYRQVVS 60 Query: 61 SPEVLVGLTNSAVIVGSAVLLGTLMGVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVA 120 SPEVL+GL NS IVG AV+LG L+GVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVA Sbjct: 61 SPEVLIGLANSLSIVGLAVVLGALLGVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVA 120 Query: 121 IPLIAIWVDLGLYDTRFSMIATYLLTTLSTITWLSIPVFQRMPREIEEAATLDGYGPYAV 180 IPLIAIWVDLGLYDT+FSM+ TYLL TLSTITWLSIPVFQR+PRE+EEAATLDGYGPY V Sbjct: 121 IPLIAIWVDLGLYDTKFSMVVTYLLVTLSTITWLSIPVFQRLPREVEEAATLDGYGPYGV 180 Query: 181 FWKIALPNCAGTLLGGIIFSFVLVWNELMIALALTSSNSATLPVVASAFTSMGQEVPWGV 240 FW+IALP A TL+GGI+FSFVLVWNELMIALALTSS SATLPVVASAFTS+GQEVPWGV Sbjct: 181 FWRIALPISATTLMGGIVFSFVLVWNELMIALALTSSRSATLPVVASAFTSLGQEVPWGV 240 Query: 241 INASTVLLALPPLIFVGVLSRLLNSILTGK 270 INASTVLLALPP+IFVGVLSRLLNS+L GK Sbjct: 241 INASTVLLALPPIIFVGVLSRLLNSMLKGK 270 >ref|ZP_02881807.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] gb|EDT12052.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] Length = 270 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 225/270 (83%), Positives = 247/270 (91%) Query: 1 MGRLIARCAVWGVGILLVLVAVFPLLWALLNSLKTLLDIVTPTPRFLFTPTLDNYRQVIG 60 MGRLI+R A W G+ L LVAVFP+LWA LNSLK+LLDIVTPTPRF+F+PTL+NYRQV+ Sbjct: 1 MGRLISRSAAWSFGVALALVAVFPVLWAFLNSLKSLLDIVTPTPRFIFSPTLENYRQVVS 60 Query: 61 SPEVLVGLTNSAVIVGSAVLLGTLMGVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVA 120 SPEVL+GL NS IVG AV+LG L+GVPAAYVIARYHVPGKRD+QFFLLSLRFLPPVAVA Sbjct: 61 SPEVLIGLGNSLSIVGFAVMLGALLGVPAAYVIARYHVPGKRDVQFFLLSLRFLPPVAVA 120 Query: 121 IPLIAIWVDLGLYDTRFSMIATYLLTTLSTITWLSIPVFQRMPREIEEAATLDGYGPYAV 180 IPLIAIWVDLGLYDT+ SM+ TYLL TLSTITWLSIPVFQR+P E+EEAATLDGYGPYAV Sbjct: 121 IPLIAIWVDLGLYDTKLSMVVTYLLVTLSTITWLSIPVFQRLPSEVEEAATLDGYGPYAV 180 Query: 181 FWKIALPNCAGTLLGGIIFSFVLVWNELMIALALTSSNSATLPVVASAFTSMGQEVPWGV 240 FW+IALP A TL+GGI+FSFVLVWNELMIALALTSS SATLPVVASAFTS+GQEVPWGV Sbjct: 181 FWRIALPISATTLMGGIVFSFVLVWNELMIALALTSSRSATLPVVASAFTSLGQEVPWGV 240 Query: 241 INASTVLLALPPLIFVGVLSRLLNSILTGK 270 INASTVLLALPP+IFVGVL RLLNS+L GK Sbjct: 241 INASTVLLALPPIIFVGVLGRLLNSMLKGK 270