BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4266.p (292 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776783.1| sugar ABC transporter permease [Herbaspirill... 490 e-136 ref|YP_003909056.1| binding-protein-dependent transport systems ... 438 e-121 ref|YP_001862735.1| binding-protein-dependent transport systems ... 437 e-120 ref|YP_003609024.1| binding-protein-dependent transporters inner... 433 e-119 ref|ZP_01770431.1| putative sugar ABC transporter, permease prot... 430 e-118 >ref|YP_003776783.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64875.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 292 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 281/292 (96%), Positives = 287/292 (98%) Query: 1 MFNRGKTSLPYLFLGPSLLVMLVLGLVPTVAAINLALKNRVLRYPDSDYVWLRNVERLMS 60 MFNRGKTSLPYLFLGPSLLVMLVLGLVPTVAAINLALKNRVLRYPDSDYVWLRN+ERLMS Sbjct: 1 MFNRGKTSLPYLFLGPSLLVMLVLGLVPTVAAINLALKNRVLRYPDSDYVWLRNLERLMS 60 Query: 61 DRRFLNAIEVSAIWEVVTVLGAVVAGILIAIYLFENVHGKWRQAMCVLLITPVLLPRVSA 120 DRRFLNAIEVSA+WEVVTVLGAV+ GI IA+YLFENVHGKWRQAMCVLLITPVLLPRVSA Sbjct: 61 DRRFLNAIEVSAVWEVVTVLGAVIVGIAIAVYLFENVHGKWRQAMCVLLITPVLLPRVSA 120 Query: 121 AFIWKFMYSPLTGILGWLLGLVGIHDTAFLSDPLLALYAVAAVDIWQWGLFFAVIVLKLL 180 AFIWKFMYSPLTGILGWLLGLVGIHDTAFLSDP LALYAVA VDIWQWGLFFAVIVLKLL Sbjct: 121 AFIWKFMYSPLTGILGWLLGLVGIHDTAFLSDPALALYAVALVDIWQWGLFFAVIVLKLL 180 Query: 181 ETLPPEPLEAARLDHARTWQVYAYIALPMLKAPLISLVFIKMVESLRSFDLIYVMTKGGP 240 ETLPPEPLEAARLD+ARTWQVYAYIALPMLK PLISLVFIKMVESLRSFDLIYVMTKGGP Sbjct: 181 ETLPPEPLEAARLDYARTWQVYAYIALPMLKGPLISLVFIKMVESLRSFDLIYVMTKGGP 240 Query: 241 GVATETLDMYAYAQGIGLSGKVSYASTMAVLMMVATTLIFTLIWKRVSKWED 292 GVATETLDMYAYAQGIGLSGKVSYASTMAVLMM+ATTLIFTLIWKRVSKWED Sbjct: 241 GVATETLDMYAYAQGIGLSGKVSYASTMAVLMMIATTLIFTLIWKRVSKWED 292 >ref|YP_003909056.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1003] gb|ADN59765.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1003] Length = 292 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 245/292 (83%), Positives = 271/292 (92%) Query: 1 MFNRGKTSLPYLFLGPSLLVMLVLGLVPTVAAINLALKNRVLRYPDSDYVWLRNVERLMS 60 MFNRGKTSLP++FLGP L +M VLGLVPTVAAINLALKNRVLRYPDS+YVWLRN RL S Sbjct: 1 MFNRGKTSLPFVFLGPPLALMAVLGLVPTVAAINLALKNRVLRYPDSEYVWLRNFLRLFS 60 Query: 61 DRRFLNAIEVSAIWEVVTVLGAVVAGILIAIYLFENVHGKWRQAMCVLLITPVLLPRVSA 120 DRRFLN+IEVSAIWE+ TV+G+VV G+L+AIYLFE +HG+ R + +LLI PVLLPRVSA Sbjct: 61 DRRFLNSIEVSAIWEIATVIGSVVVGVLVAIYLFEQIHGRMRSVISLLLIVPVLLPRVSA 120 Query: 121 AFIWKFMYSPLTGILGWLLGLVGIHDTAFLSDPLLALYAVAAVDIWQWGLFFAVIVLKLL 180 AFIWKFMYSPLTGILGW LGL+GI +TAFLSDP LALYAVA VDIWQWGLFFAV+VLKLL Sbjct: 121 AFIWKFMYSPLTGILGWFLGLLGIGNTAFLSDPHLALYAVALVDIWQWGLFFAVVVLKLL 180 Query: 181 ETLPPEPLEAARLDHARTWQVYAYIALPMLKAPLISLVFIKMVESLRSFDLIYVMTKGGP 240 ETLPPEPLEAARLD+ARTWQVYAYIALPMLK P++SLVFIKMVESLRSFDL+YVMTKGGP Sbjct: 181 ETLPPEPLEAARLDYARTWQVYAYIALPMLKVPIMSLVFIKMVESLRSFDLVYVMTKGGP 240 Query: 241 GVATETLDMYAYAQGIGLSGKVSYASTMAVLMMVATTLIFTLIWKRVSKWED 292 G+ TETLDMYAY+QGIGLSGKVSYAS+MAVLMMVATT+IFT IWKRV+KWED Sbjct: 241 GITTETLDMYAYSQGIGLSGKVSYASSMAVLMMVATTVIFTFIWKRVNKWED 292 >ref|YP_001862735.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] gb|ACC75689.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] Length = 292 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 249/292 (85%), Positives = 273/292 (93%) Query: 1 MFNRGKTSLPYLFLGPSLLVMLVLGLVPTVAAINLALKNRVLRYPDSDYVWLRNVERLMS 60 MFNRGKTSLP++FL P L+VM VLGLVPTVAAINLAL+NRVLRY DS+YVW RN RL S Sbjct: 1 MFNRGKTSLPFVFLAPPLIVMAVLGLVPTVAAINLALRNRVLRYSDSEYVWFRNFARLFS 60 Query: 61 DRRFLNAIEVSAIWEVVTVLGAVVAGILIAIYLFENVHGKWRQAMCVLLITPVLLPRVSA 120 DRRF+N+IEVSAIWE+VTV+GAV GI+IAIYLFE+VHG R A+ VLLITPVLLPRVSA Sbjct: 61 DRRFVNSIEVSAIWEIVTVVGAVAVGIVIAIYLFEHVHGGMRNAISVLLITPVLLPRVSA 120 Query: 121 AFIWKFMYSPLTGILGWLLGLVGIHDTAFLSDPLLALYAVAAVDIWQWGLFFAVIVLKLL 180 AFIWKFMYSPLTGIL W+LGLVG+ DTAFLSDP LALYAVA VDIWQWGLFF+V+VLKLL Sbjct: 121 AFIWKFMYSPLTGILSWMLGLVGVQDTAFLSDPGLALYAVALVDIWQWGLFFSVVVLKLL 180 Query: 181 ETLPPEPLEAARLDHARTWQVYAYIALPMLKAPLISLVFIKMVESLRSFDLIYVMTKGGP 240 ETLPPEPLEAARLD+A+TWQVYAYIALPMLKAP++SLVFIKMVESLRSFDLIYVMTKGGP Sbjct: 181 ETLPPEPLEAARLDYAKTWQVYAYIALPMLKAPIMSLVFIKMVESLRSFDLIYVMTKGGP 240 Query: 241 GVATETLDMYAYAQGIGLSGKVSYASTMAVLMMVATTLIFTLIWKRVSKWED 292 GV+TETLDMYAY+QGIGLSGKVSYAS+MAVLMMVATTLIFT IWKRV+KWED Sbjct: 241 GVSTETLDMYAYSQGIGLSGKVSYASSMAVLMMVATTLIFTFIWKRVNKWED 292 >ref|YP_003609024.1| binding-protein-dependent transporters inner membrane component [Burkholderia sp. CCGE1002] gb|ADG19513.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1002] Length = 292 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 238/292 (81%), Positives = 265/292 (90%) Query: 1 MFNRGKTSLPYLFLGPSLLVMLVLGLVPTVAAINLALKNRVLRYPDSDYVWLRNVERLMS 60 MFNRGKTSLP++FL P L+ M VLG VPTVAAINLAL+NRVLRYPDS+ VW RN RL + Sbjct: 1 MFNRGKTSLPFVFLVPPLVAMAVLGFVPTVAAINLALRNRVLRYPDSELVWFRNFVRLAA 60 Query: 61 DRRFLNAIEVSAIWEVVTVLGAVVAGILIAIYLFENVHGKWRQAMCVLLITPVLLPRVSA 120 DRRF+N+IEVS IWE+VTVLGAV GI++AIYLFE+VHG+ R A+ VLLI PVLLPRVSA Sbjct: 61 DRRFINSIEVSVIWEIVTVLGAVALGIVVAIYLFEHVHGRLRNAISVLLIIPVLLPRVSA 120 Query: 121 AFIWKFMYSPLTGILGWLLGLVGIHDTAFLSDPLLALYAVAAVDIWQWGLFFAVIVLKLL 180 AFIWKFMYSPL GIL WL GL G +TAFLSDP LALYAVA VD+WQWGLFF+V+VLKLL Sbjct: 121 AFIWKFMYSPLNGILSWLAGLFGFTNTAFLSDPGLALYAVALVDVWQWGLFFSVVVLKLL 180 Query: 181 ETLPPEPLEAARLDHARTWQVYAYIALPMLKAPLISLVFIKMVESLRSFDLIYVMTKGGP 240 ETLPPEPLEAARLD+A TWQVYAYIALPMLKAP++SLVFIKMVESLRSFDLIYVMTKGGP Sbjct: 181 ETLPPEPLEAARLDYASTWQVYAYIALPMLKAPIMSLVFIKMVESLRSFDLIYVMTKGGP 240 Query: 241 GVATETLDMYAYAQGIGLSGKVSYASTMAVLMMVATTLIFTLIWKRVSKWED 292 GV+TETLD+YAY+QGIGL+GKVSYAS+MAVLMM ATTLIFTLIWKRV+KWED Sbjct: 241 GVSTETLDLYAYSQGIGLAGKVSYASSMAVLMMAATTLIFTLIWKRVNKWED 292 >ref|ZP_01770431.1| putative sugar ABC transporter, permease protein [Burkholderia pseudomallei 305] gb|EBA45011.1| putative sugar ABC transporter, permease protein [Burkholderia pseudomallei 305] Length = 292 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 238/292 (81%), Positives = 264/292 (90%) Query: 1 MFNRGKTSLPYLFLGPSLLVMLVLGLVPTVAAINLALKNRVLRYPDSDYVWLRNVERLMS 60 MFN GKTSLP+LFLGP L +M VLGLVPT+AAINLALKNRVLRY DSDYV LRN RL S Sbjct: 1 MFNHGKTSLPWLFLGPPLALMAVLGLVPTIAAINLALKNRVLRYADSDYVGLRNFVRLAS 60 Query: 61 DRRFLNAIEVSAIWEVVTVLGAVVAGILIAIYLFENVHGKWRQAMCVLLITPVLLPRVSA 120 DRRFLNAIEVSA+WE VTV GAV GI++A++LFE VHG+WR A ++LI PVLLPRVSA Sbjct: 61 DRRFLNAIEVSALWESVTVAGAVAVGIVLAVFLFERVHGRWRHAAALILIMPVLLPRVSA 120 Query: 121 AFIWKFMYSPLTGILGWLLGLVGIHDTAFLSDPLLALYAVAAVDIWQWGLFFAVIVLKLL 180 AFIWKFMY+PLTGILGWLLG +G+ + A+L+DP LAL AVA VD+WQWGLFF V+VLKLL Sbjct: 121 AFIWKFMYAPLTGILGWLLGALGMTNVAWLADPRLALAAVALVDVWQWGLFFCVVVLKLL 180 Query: 181 ETLPPEPLEAARLDHARTWQVYAYIALPMLKAPLISLVFIKMVESLRSFDLIYVMTKGGP 240 ETLPPEPLEAARLD+A TWQVYAYIALPMLKAP++SLVFIKMVESLRSFDLIYVMTKGGP Sbjct: 181 ETLPPEPLEAARLDYASTWQVYAYIALPMLKAPIMSLVFIKMVESLRSFDLIYVMTKGGP 240 Query: 241 GVATETLDMYAYAQGIGLSGKVSYASTMAVLMMVATTLIFTLIWKRVSKWED 292 G+ATETLDMYAYAQGIGLSGKVSYAS+MAVLMMVATTL+FT IWKRV KW+D Sbjct: 241 GIATETLDMYAYAQGIGLSGKVSYASSMAVLMMVATTLVFTFIWKRVDKWDD 292