BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4264.p (459 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776781.1| transmembrane sensor kinase transcription re... 775 0.0 ref|YP_004753124.1| histidine kinase [Collimonas fungivorans Ter... 471 e-130 ref|ZP_02881848.1| histidine kinase [Burkholderia graminis C4D1M... 372 e-101 ref|YP_001860126.1| histidine kinase [Burkholderia phymatum STM8... 371 e-100 ref|ZP_03266743.1| histidine kinase [Burkholderia sp. H160] >gi|... 370 e-100 >ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64873.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 439/457 (96%), Positives = 451/457 (98%) Query: 1 MIDSLRLRLLWWLLIPMAVYVGLSTGDAYDNAVSSATLVQDRALLASARMMAGQVGWNDG 60 MIDSLRLRLLWWLLIPMAVYVGLST DAYDNAVSSATLVQDRALLASARM+AGQVGWNDG Sbjct: 1 MIDSLRLRLLWWLLIPMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDG 60 Query: 61 APVVSIPPAALELFASPAQDAVYYQVRMDDETLLAGRPDFPAEPDFAALYPVYTTTTFEG 120 APVVS+PPAALELFASPAQDAVYYQV MDD+TLLAGRPDFPA PDFAALYPVY+TT+F G Sbjct: 61 APVVSVPPAALELFASPAQDAVYYQVLMDDDTLLAGRPDFPAAPDFAALYPVYSTTSFNG 120 Query: 121 KPLRVVSYIRALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVL 180 KPLRVVSYIRALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVL Sbjct: 121 KPLRVVSYIRALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVL 180 Query: 181 GLTMELRPLLALKDELATREPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRF 240 GLTMELRPLLALKDELATR PDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRF Sbjct: 181 GLTMELRPLLALKDELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRF 240 Query: 241 VADAAHQLRTPLAVIDSQIQFARQLDDPARVKQVLASLQEGSRSMTDLTNKLLLLSQAEA 300 VADAAHQLRTPLAVIDSQIQFARQLDDPARV QVLASLQEGSRSMTDLTNKLLLLSQAEA Sbjct: 241 VADAAHQLRTPLAVIDSQIQFARQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLSQAEA 300 Query: 301 SNSSAFPRAPVDLLAVAAMVLEELAGLALKKGIDLGLETTLESAMVNGNEAQLMGLLMNL 360 S+SSAFPRAPVDLLAV+AMVLEEL+GLALKKGIDLGLETTLESAMVNGNEAQLMG+LMNL Sbjct: 301 SDSSAFPRAPVDLLAVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGMLMNL 360 Query: 361 IDNALRYTPEGGKVTVGLEKKRSQIIITVTDNGPGIPAEVRERVFERFYRNAAPDQPGSG 420 IDNALRYTPEGGKVTVGLEKKRSQ+IITV+DNGPGIPAEVRERVFERFYRNAAPDQPGSG Sbjct: 361 IDNALRYTPEGGKVTVGLEKKRSQMIITVSDNGPGIPAEVRERVFERFYRNAAPDQPGSG 420 Query: 421 LGLAIVREIVQASQGAIRLDAPAQGSGLVATVSLPAL 457 LGLAIVREIVQASQG+IRLDAPAQGSGLVATVSLPAL Sbjct: 421 LGLAIVREIVQASQGSIRLDAPAQGSGLVATVSLPAL 457 >ref|YP_004753124.1| histidine kinase [Collimonas fungivorans Ter331] gb|AEK62301.1| histidine kinase [Collimonas fungivorans Ter331] Length = 469 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 265/448 (59%), Positives = 336/448 (75%), Gaps = 3/448 (0%) Query: 15 IPMAVYVGLSTGDAYDNAVSSATLVQDRALLASARMMAGQVGWNDGAPVVSIPPAALELF 74 IP+AV+V +S +Y +A +A L+QD ALLASA+++AG++ W DG P S+PPAALEL Sbjct: 15 IPLAVFVAISATLSYRSARQTADLIQDHALLASAQVIAGEIHWLDGVPHASVPPAALELL 74 Query: 75 ASPAQDAVYYQVRMDDETLLAGRPDFPAEPDFAALYPVYTTTTFEGKPLRVVSYIRALFD 134 S QD VYYQV D+++LLAGRPDFP F P ++T + G+ LRVVS +R L++ Sbjct: 75 VSSMQDQVYYQVITDNDSLLAGRPDFPQALRFPLSTPAFSTIDYHGQVLRVVSQVRTLYN 134 Query: 135 EGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVLGLTMELRPLLALKD 194 G LR +AV VGQT R +M+ D W SL RQI +LLLA +LVV+GL+MELRPL+ LK+ Sbjct: 135 AGQLRKIAVLVGQTTGARDQMLADLWRPSLHRQIAMLLLAAALVVIGLSMELRPLMHLKN 194 Query: 195 ELATREPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVADAAHQLRTPLAV 254 +LA R+ SL+P++AG LQ ELRPIVEAINQ I RLN QV+ QKRF+ADAAHQLRTPL + Sbjct: 195 QLAARDATSLSPIKAGQLQLELRPIVEAINQTIQRLNTQVSAQKRFIADAAHQLRTPLTL 254 Query: 255 IDSQIQFARQLDDPAR---VKQVLASLQEGSRSMTDLTNKLLLLSQAEASNSSAFPRAPV 311 +DSQIQFAR+L D R V QVL ++ E S +MT+LTNKLLLLSQAEAS+++AF R PV Sbjct: 255 LDSQIQFARRLGDENRRTEVLQVLQAMHESSSNMTELTNKLLLLSQAEASDTTAFLRQPV 314 Query: 312 DLLAVAAMVLEELAGLALKKGIDLGLETTLESAMVNGNEAQLMGLLMNLIDNALRYTPEG 371 DLLAV+A VLEE+ LA +K IDLGLETT++ A V GNEA ++MNL+DNA+RYTP Sbjct: 315 DLLAVSAAVLEEIVDLAQRKNIDLGLETTMQHAWVMGNEALFSAMMMNLVDNAIRYTPID 374 Query: 372 GKVTVGLEKKRSQIIITVTDNGPGIPAEVRERVFERFYRNAAPDQPGSGLGLAIVREIVQ 431 G VTV + Q+ I+V+DNGPGIPAEVR+RVFERF+RNAAP Q G+GLGLAIV+EIV Sbjct: 375 GTVTVAIGASHGQVEISVSDNGPGIPAEVRDRVFERFFRNAAPGQDGTGLGLAIVKEIVM 434 Query: 432 ASQGAIRLDAPAQGSGLVATVSLPALAG 459 A+QG++ L A Q GL + LP+ A Sbjct: 435 AAQGSVTLGAGEQQRGLAVLLQLPSCAA 462 >ref|ZP_02881848.1| histidine kinase [Burkholderia graminis C4D1M] gb|EDT12093.1| histidine kinase [Burkholderia graminis C4D1M] Length = 465 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 222/442 (50%), Positives = 296/442 (66%), Gaps = 5/442 (1%) Query: 16 PMAVYVGLSTGDAYDNAVSSATLVQDRALLASARMMAGQVGWNDGAPVVSIPPAALELFA 75 P+A+YV ++ AYDNA +A LVQD L++SARM+AG+V W DG V +PPAALE+FA Sbjct: 16 PLALYVFVTGKAAYDNARQTADLVQDNQLISSARMIAGEVEWVDGFLRVDVPPAALEIFA 75 Query: 76 SPAQDAVYYQVRMDDETLLAGRPDFPAEPDFAALYPVYTTTTFEGKPLRVVSYIRALFDE 135 SP +D V+Y V +D LLAG PDFP P AA P + TT G+ +R V +R ++D Sbjct: 76 SPYRDQVFYSVNVDGRHLLAGTPDFPPRPTQAADTPDHYDTTLYGQDVRAVGIVRLMYDN 135 Query: 136 GTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVLGLTMELRPLLALKDE 195 G R V V+VG+T++ R M + W L RQI ++ LA++LV +GLT ELRPL+ +K+E Sbjct: 136 GATRRVRVTVGKTVRSRDAMAEQLWQPQLVRQIEMIALAVALVCIGLTFELRPLMKVKEE 195 Query: 196 LATREPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVADAAHQLRTPLAVI 255 +A R+P L P+R L ELRPIVEAINQ I RL QV Q+RF+ADAAHQLRTPL ++ Sbjct: 196 VADRDPMQLEPIRVDRLHTELRPIVEAINQCIARLGVQVAAQRRFIADAAHQLRTPLTLL 255 Query: 256 DSQIQFARQLD--DPARVKQVLASLQEGSRSMTDLTNKLLLLSQAEASNSSAFPRAPVDL 313 +Q+QFARQ +PA + + LA++ +RSM LTNKLLLL+QAEA+++S VDL Sbjct: 256 GTQLQFARQQGGVNPA-LDEALAAMHRSNRSMVGLTNKLLLLAQAEAADNSQVVVETVDL 314 Query: 314 LAVAAMVLEELAGLALKKGIDLGLETTLESAMVNGNEAQLMGLLMNLIDNALRYTPEGGK 373 + +A V+E+LA LA + IDLG E +SA V G+ L L+ NL++NA+RYT GG Sbjct: 315 VPLALEVVEDLALLAQGREIDLGAELC-DSAPVAGHRGLLQALIANLVENAIRYTGSGGH 373 Query: 374 VTVGLEKKRSQIIITVTDNGPGIPAEVRERVFERFYRNAAPDQPGSGLGLAIVREIVQAS 433 VTV ++ + ++V D+GPGIPAE R R+FE F+R A+ D G+GLGLAIVREI A Sbjct: 374 VTVSVKADADSVTVSVLDDGPGIPAESRSRIFEPFFR-ASTDTEGTGLGLAIVREIADAH 432 Query: 434 QGAIRLDAPAQGSGLVATVSLP 455 G I LD G G+ VS P Sbjct: 433 AGNITLDTGEGGKGVHMRVSFP 454 >ref|YP_001860126.1| histidine kinase [Burkholderia phymatum STM815] gb|ACC73080.1| histidine kinase [Burkholderia phymatum STM815] Length = 466 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 225/445 (50%), Positives = 292/445 (65%), Gaps = 8/445 (1%) Query: 15 IPMAVYVGLSTGDAYDNAVSSATLVQDRALLASARMMAGQVGWNDGAPVVSIPPAALELF 74 +P+A+YV ++ YDNA +A LVQD LL+SARM+AG+V W DG V IPPAALE+F Sbjct: 15 VPLAIYVFVTGKAEYDNARRTADLVQDNTLLSSARMIAGEVEWADGTLRVDIPPAALEIF 74 Query: 75 ASPAQDAVYYQVRMDDETLLAGRPDFPA-EPDFAALY---PVYTTTTFEGKPLRVVSYIR 130 ASP D V+Y V +DD+ LLAG PDFP+ P A+ P Y G +R + Y+R Sbjct: 75 ASPYGDQVFYNVSVDDDRLLAGVPDFPSIAPAMASATHDTPTYYDADLHGASIRAIGYVR 134 Query: 131 ALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVLGLTMELRPLL 190 ++D G R V VSVG+T R M+ + W L RQ ++LLA++L +GLT ELRPLL Sbjct: 135 RMYDNGATRRVLVSVGKTQASRDAMVRELWRPQLVRQFEMMLLAVALACIGLTFELRPLL 194 Query: 191 ALKDELATREPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVADAAHQLRT 250 +KDE+ R+P L PLR L ELRPIV+AINQ I RL QV Q+RF+ADAAHQLRT Sbjct: 195 KVKDEVMDRDPMQLEPLRVDRLHTELRPIVDAINQCIARLGVQVAAQRRFIADAAHQLRT 254 Query: 251 PLAVIDSQIQFARQLDD-PARVKQVLASLQEGSRSMTDLTNKLLLLSQAEASNSSAFPRA 309 PL ++D+Q+Q+ARQ + + + LA++Q +RSM LTNKLLLL+QAEA++ + Sbjct: 255 PLTLLDTQLQYARQHRELEPSLGEALAAMQRSNRSMVGLTNKLLLLAQAEAADYTQLANQ 314 Query: 310 PVDLLAVAAMVLEELAGLALKKGIDLGLETTLESAMVNGNEAQLMGLLMNLIDNALRYTP 369 PVDL ++A V+E+LA A + IDLG E ESA V G+E L L+ NL +NA+RYT Sbjct: 315 PVDLASIAKSVVEDLALFAQNRDIDLGAELD-ESAWVIGHEGLLTALVSNLAENAIRYTQ 373 Query: 370 EGGKVTVGLEKKRSQIIITVTDNGPGIPAEVRERVFERFYRNAAPDQPGSGLGLAIVREI 429 GG VTV + + + VTD+GPGIPAE R RVFE FYR A+ D G+GLGLAI REI Sbjct: 374 RGGHVTVAVRGGAVTVALNVTDDGPGIPAEARSRVFEPFYR-ASADTEGTGLGLAIAREI 432 Query: 430 VQASQGAIRLDAPAQGSGLVATVSL 454 VQA +G I L A +G TV + Sbjct: 433 VQAHRGEIAL-ATGEGEARGLTVKV 456 >ref|ZP_03266743.1| histidine kinase [Burkholderia sp. H160] gb|EEA01649.1| histidine kinase [Burkholderia sp. H160] Length = 459 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 225/443 (50%), Positives = 291/443 (65%), Gaps = 5/443 (1%) Query: 15 IPMAVYVGLSTGDAYDNAVSSATLVQDRALLASARMMAGQVGWNDGAPVVSIPPAALELF 74 +P+A+YV ++ YDNA +A LVQD L+ASARM+AGQV W DG V +PPAALE+F Sbjct: 15 VPLALYVFVTGTTEYDNARRTANLVQDNQLVASARMIAGQVEWRDGFLQVDVPPAALEIF 74 Query: 75 ASPAQDAVYYQVRMDDETLLAGRPDFPAEPDFAALYPVYTTTTFEGKPLRVVSYIRALFD 134 ASP +D V+Y VR DD LLAG PDFPA P A P G P+R V +R ++D Sbjct: 75 ASPYRDQVFYSVRTDDGRLLAGTPDFPARPVPAPDVPDSYDMELHGHPVRAVDIVRLMYD 134 Query: 135 EGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVLGLTMELRPLLALKD 194 G R V V+VG+T++ R M W L RQ+ ++ LA++LV +GLT ELRPL+ +KD Sbjct: 135 NGATRPVRVTVGKTVRSRDAMTQQLWRPQLVRQLEMIALAVALVCIGLTFELRPLMKVKD 194 Query: 195 ELATREPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVADAAHQLRTPLAV 254 E+A R+P L P+R L ELRPIV+AINQ I RL QV Q+RF+ADAAHQLRTPL + Sbjct: 195 EVADRDPMQLEPIRVERLHSELRPIVDAINQCIARLGLQVAAQRRFIADAAHQLRTPLTL 254 Query: 255 IDSQIQFARQLDD--PARVKQVLASLQEGSRSMTDLTNKLLLLSQAEASNSSAFPRAPVD 312 + +Q+QFARQ +D PA + + LA++ +RSM LTNKLLLL+QAEA+++S VD Sbjct: 255 LGTQLQFARQQEDLNPA-LDEALAAMHRSNRSMVGLTNKLLLLAQAEAADNSQLAMESVD 313 Query: 313 LLAVAAMVLEELAGLALKKGIDLGLETTLESAMVNGNEAQLMGLLMNLIDNALRYTPEGG 372 L+ +A V+E+LA LA + IDLG E A V G+ L L+ NL +NA+RYT GG Sbjct: 314 LVPLAMEVVEDLALLAQAREIDLGAELH-GVAPVLGHRGLLQALIANLAENAIRYTGSGG 372 Query: 373 KVTVGLEKKRSQIIITVTDNGPGIPAEVRERVFERFYRNAAPDQPGSGLGLAIVREIVQA 432 VTV + + + ++V DNGPGIPAE R RVFE FYR A+ D G+GLGLAIVREI A Sbjct: 373 HVTVAVSATANTVTVSVIDNGPGIPAESRSRVFEPFYR-ASTDTEGTGLGLAIVREIADA 431 Query: 433 SQGAIRLDAPAQGSGLVATVSLP 455 G I L A G G+ V+ P Sbjct: 432 HHGEIALKAGEGGKGVDIAVTFP 454