BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4263.p (223 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776780.1| response regulator consisting of a CheY-like... 405 e-111 ref|YP_004753123.1| putative response regulator protein [Collimo... 348 4e-94 ref|ZP_06845517.1| two component transcriptional regulator, wing... 300 1e-79 ref|YP_001887792.1| two component winged helix family transcript... 291 4e-77 ref|YP_554801.1| two component transcriptional regulator [Burkho... 290 9e-77 >ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ64872.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 212/222 (95%), Positives = 219/222 (98%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 Query: 121 PDKAAEIHCGDLVYDSNTRQFAVAGVTLALPAREHDVLEVLMLKQGKTVSKTALMKGVFS 180 PDKAAEIHCG+LVYDSNTRQFAV GVTLALPAREHDVLEVL+L+QGKTVSKTALMKGVFS Sbjct: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 Query: 181 LSEEPSADAIEIYISRLRKKLEHSSAAIMTLRGLGYLLKQKD 222 LSEEPSADAIE+YISRLRKKL+ S AAIMTLRGLGYLL+Q+D Sbjct: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 >ref|YP_004753123.1| putative response regulator protein [Collimonas fungivorans Ter331] gb|AEK62300.1| putative response regulator protein [Collimonas fungivorans Ter331] Length = 224 Score = 348 bits (892), Expect = 4e-94, Method: Composition-based stats. Identities = 180/222 (81%), Positives = 199/222 (89%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LA WL +ILKE KF +D+A+DGE AD++L+ E+YDVVLLDL LPK++GK Sbjct: 1 MKLLLIEDNPPLALWLSKILKEDKFTIDLASDGEAADRLLQSESYDVVLLDLQLPKMNGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 VLRRLRERHN VPVMILTASGS+DEKV+CLGAGADDYLVKPFE+RELVARIK L+RRQT Sbjct: 61 AVLRRLRERHNNVPVMILTASGSVDEKVDCLGAGADDYLVKPFEVRELVARIKALIRRQT 120 Query: 121 PDKAAEIHCGDLVYDSNTRQFAVAGVTLALPAREHDVLEVLMLKQGKTVSKTALMKGVFS 180 P KAAE+HC DL YDSNTRQF++AG LALP REHDVLE+LMLKQGKTVSKTALM GVF Sbjct: 121 PGKAAEMHCADLRYDSNTRQFSIAGKLLALPGREHDVLEILMLKQGKTVSKTALMDGVFG 180 Query: 181 LSEEPSADAIEIYISRLRKKLEHSSAAIMTLRGLGYLLKQKD 222 L +EPSADAIEIYI RLRKKLEH AAIMTLRGLGYLLKQKD Sbjct: 181 LDDEPSADAIEIYIHRLRKKLEHCQAAIMTLRGLGYLLKQKD 222 >ref|ZP_06845517.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gb|EFG66881.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 296 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 149/223 (66%), Positives = 185/223 (82%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LAHWL ++L++ F +D DG+ ADQ+LR +YDV+LLDL LPKL GK Sbjct: 72 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 131 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+REL+ARIKV +RRQ+ Sbjct: 132 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 191 Query: 121 PDKAAEIHCGDLVYDSNTRQFAVAGVTLALPAREHDVLEVLMLKQGKTVSKTALMKGVFS 180 P KA+E+ CGDL +D +TRQF + G L + RE VLE L+L+ GKTV+K AL+ +F+ Sbjct: 192 PSKASEVVCGDLAFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 251 Query: 181 LSEEPSADAIEIYISRLRKKLEHSSAAIMTLRGLGYLLKQKDD 223 L++EPS DA+EIYISRLRKKL+ SSAAI+TLRGLGYLL++K+D Sbjct: 252 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKED 294 >ref|YP_001887792.1| two component winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD18422.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 225 Score = 291 bits (745), Expect = 4e-77, Method: Composition-based stats. Identities = 149/223 (66%), Positives = 185/223 (82%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LAHWL ++L++ F +D DG+ ADQ+LR +YDV+LLDL LPKL GK Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDTVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+REL+ARIKV +RRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 PDKAAEIHCGDLVYDSNTRQFAVAGVTLALPAREHDVLEVLMLKQGKTVSKTALMKGVFS 180 P KA+E+ CGDL +D +TRQF + G L + RE VLE L+L+ GKTV+K AL+ +F+ Sbjct: 121 PSKASEVVCGDLTFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180 Query: 181 LSEEPSADAIEIYISRLRKKLEHSSAAIMTLRGLGYLLKQKDD 223 L++EPS DA+EIYISRLRKKL+ SSAAI+TLRGLGYLL++K+D Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKED 223 >ref|YP_554801.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE35451.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 225 Score = 290 bits (743), Expect = 9e-77, Method: Composition-based stats. Identities = 149/223 (66%), Positives = 185/223 (82%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LAHWL ++L++ F +D DG+ ADQ+LR +YDV+LLDL LPKL GK Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+REL+ARIKV +RRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 PDKAAEIHCGDLVYDSNTRQFAVAGVTLALPAREHDVLEVLMLKQGKTVSKTALMKGVFS 180 P KA+E+ CGDL +D +TRQF + G L + RE VLE L+L+ GKTV+K AL+ +F+ Sbjct: 121 PSKASEVVCGDLAFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180 Query: 181 LSEEPSADAIEIYISRLRKKLEHSSAAIMTLRGLGYLLKQKDD 223 L++EPS DA+EIYISRLRKKL+ SSAAI+TLRGLGYLL++K+D Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKED 223