BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4261.p (320 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776778.1| nitrate/sulfonate/bicarbonate ABC transporte... 561 e-158 ref|YP_004753122.1| nitrate/sulfonate/bicarbonate ABC transporte... 491 e-137 ref|YP_001887794.1| NMT1/THI5 like domain-containing protein [Bu... 454 e-125 ref|YP_004231016.1| ABC nitrate/sulfonate/bicarbonate family tra... 447 e-123 ref|ZP_02881850.1| ABC nitrate/sulfonate/bicarbonate family tran... 446 e-123 >ref|YP_003776778.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64870.1| ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 294/307 (95%), Positives = 301/307 (98%) Query: 14 KVTIMVGGINKMVYLPAKLAEQLGYFKEEGLDVELQSQPAGVDAENELLAGAVQAVVGFY 73 K+TIMVGGINKMVYLPAKLAEQLGYFKEEGLDVELQSQPAGVDAENELLAGAVQAVVGFY Sbjct: 31 KITIMVGGINKMVYLPAKLAEQLGYFKEEGLDVELQSQPAGVDAENELLAGAVQAVVGFY 90 Query: 74 DHSIDLQTKGKEITAITILGQVPGEVELVSTKAAPHFQSMADAKGKTLGVTGLGSSTNFL 133 DHSIDLQTKGKEITAI ILGQVPGEVELVSTKAAPHFQSMADAKGKTLGVTGLGSSTNFL Sbjct: 91 DHSIDLQTKGKEITAIVILGQVPGEVELVSTKAAPHFQSMADAKGKTLGVTGLGSSTNFL 150 Query: 134 TQYLASRHGITSKQFSVLPVGADNTFIAAMKQGRIDAGMTTEPTASLLLKTGDAQVLVDM 193 TQYLASRHGITSKQFSVLPVGADNTFIAAMKQGRIDAGMTTEPTAS LLKTGDAQVLVD+ Sbjct: 151 TQYLASRHGITSKQFSVLPVGADNTFIAAMKQGRIDAGMTTEPTASQLLKTGDAQVLVDL 210 Query: 194 RTVEGTVKALGGLYPASSVYVQRSWLNSHKEEAQKLARAFVKTLKFINTHTAEQIAEKMP 253 RTVEGTVKALGGLYPASSVYVQRSWLNSHKE+AQKLARAFVKTL+FI THTAEQIA+KMP Sbjct: 211 RTVEGTVKALGGLYPASSVYVQRSWLNSHKEDAQKLARAFVKTLRFIQTHTAEQIADKMP 270 Query: 254 KDYYGSNKALYIQALNNSLPMYSPDGKMPKGGPETVLAVLSGFNPNVKGKHVDLSKTYTD 313 KDYYG+NK LYIQAL NSLPMYS DGKMPKGGP+TVLAVLSGFNPNVKGKHVDLSKTYTD Sbjct: 271 KDYYGNNKPLYIQALTNSLPMYSQDGKMPKGGPQTVLAVLSGFNPNVKGKHVDLSKTYTD 330 Query: 314 EFVNAVK 320 EFVNAVK Sbjct: 331 EFVNAVK 337 >ref|YP_004753122.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic proteins [Collimonas fungivorans Ter331] gb|AEK62299.1| ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Collimonas fungivorans Ter331] Length = 356 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 259/320 (80%), Positives = 285/320 (89%) Query: 1 MLAALPIHAVAAAKVTIMVGGINKMVYLPAKLAEQLGYFKEEGLDVELQSQPAGVDAENE 60 +L A A + K+TIMVGGI KM+YLPAKL EQLGYFKEEGLDVELQSQPAGVDAENE Sbjct: 37 VLGASQAMAADSGKITIMVGGITKMIYLPAKLTEQLGYFKEEGLDVELQSQPAGVDAENE 96 Query: 61 LLAGAVQAVVGFYDHSIDLQTKGKEITAITILGQVPGEVELVSTKAAPHFQSMADAKGKT 120 LLAGAVQAVVGFYDHSIDLQ+KGKE+TAITI GQVPGEVE+VSTKAA +SMAD KGKT Sbjct: 97 LLAGAVQAVVGFYDHSIDLQSKGKEVTAITIFGQVPGEVEMVSTKAAATIKSMADVKGKT 156 Query: 121 LGVTGLGSSTNFLTQYLASRHGITSKQFSVLPVGADNTFIAAMKQGRIDAGMTTEPTASL 180 LGVTGLGSSTNFLTQYLA++ GITS Q+SVLPVGADNTFI A+KQGRIDAGMTTEPT S Sbjct: 157 LGVTGLGSSTNFLTQYLAAKAGITSSQYSVLPVGADNTFIVAIKQGRIDAGMTTEPTVSQ 216 Query: 181 LLKTGDAQVLVDMRTVEGTVKALGGLYPASSVYVQRSWLNSHKEEAQKLARAFVKTLKFI 240 LLKTG+A VLVDMRTVEGTVKALGGLYPASS+YVQ WL +HK EA KLA AFVKTLKFI Sbjct: 217 LLKTGEASVLVDMRTVEGTVKALGGLYPASSLYVQGPWLKAHKAEATKLAHAFVKTLKFI 276 Query: 241 NTHTAEQIAEKMPKDYYGSNKALYIQALNNSLPMYSPDGKMPKGGPETVLAVLSGFNPNV 300 NTH+A +IA+KMPKDYYG+NK +Y+QAL NSLPM+S DGKMP GGPETVL VLSGFNPNV Sbjct: 277 NTHSAAEIADKMPKDYYGNNKPMYVQALQNSLPMFSADGKMPPGGPETVLQVLSGFNPNV 336 Query: 301 KGKHVDLSKTYTDEFVNAVK 320 KGKH+DL+KTYT+EFV+ K Sbjct: 337 KGKHIDLAKTYTNEFVSQAK 356 >ref|YP_001887794.1| NMT1/THI5 like domain-containing protein [Burkholderia phytofirmans PsJN] gb|ACD18424.1| NMT1/THI5 like domain protein [Burkholderia phytofirmans PsJN] Length = 356 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 228/317 (71%), Positives = 272/317 (85%) Query: 4 ALPIHAVAAAKVTIMVGGINKMVYLPAKLAEQLGYFKEEGLDVELQSQPAGVDAENELLA 63 A P A + K+ IMVGGI K++YLPA+L EQLGYFK EGLDVELQSQPAGVDAENELLA Sbjct: 39 AAPARADSPEKIVIMVGGITKLIYLPARLTEQLGYFKAEGLDVELQSQPAGVDAENELLA 98 Query: 64 GAVQAVVGFYDHSIDLQTKGKEITAITILGQVPGEVELVSTKAAPHFQSMADAKGKTLGV 123 G VQAVVGFYDH+IDLQ KGKEI AI + GQVPGEVE+V+ +AA +SMAD KGKTLGV Sbjct: 99 GGVQAVVGFYDHAIDLQAKGKEIKAIVVFGQVPGEVEMVAARAAGSIRSMADVKGKTLGV 158 Query: 124 TGLGSSTNFLTQYLASRHGITSKQFSVLPVGADNTFIAAMKQGRIDAGMTTEPTASLLLK 183 TGLGSSTNFLTQYLAS G+ Q++VLPVGADN+FIAA++QGRIDAGMTTEPT S LLK Sbjct: 159 TGLGSSTNFLTQYLASLKGVPRSQYTVLPVGADNSFIAAIRQGRIDAGMTTEPTVSQLLK 218 Query: 184 TGDAQVLVDMRTVEGTVKALGGLYPASSVYVQRSWLNSHKEEAQKLARAFVKTLKFINTH 243 +GDA+VLVDMR VEGT ALGG YPASS+YVQ +WL++H +EA KLARA VKTL+++NTH Sbjct: 219 SGDARVLVDMRNVEGTRAALGGTYPASSLYVQSAWLDTHPQEAAKLARALVKTLRYLNTH 278 Query: 244 TAEQIAEKMPKDYYGSNKALYIQALNNSLPMYSPDGKMPKGGPETVLAVLSGFNPNVKGK 303 +AE+IA +MPKDY G+++ALY+ AL SLPM++ DGKMP GPETVL VL+GFNP+VKG+ Sbjct: 279 SAEEIAAQMPKDYIGNDEALYVSALKASLPMFTADGKMPADGPETVLKVLAGFNPSVKGR 338 Query: 304 HVDLSKTYTDEFVNAVK 320 H+DLS+T+T++FVN VK Sbjct: 339 HIDLSRTFTNQFVNEVK 355 >ref|YP_004231016.1| ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand-binding protein [Burkholderia sp. CCGE1001] gb|ADX57956.1| ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [Burkholderia sp. CCGE1001] Length = 339 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 231/305 (75%), Positives = 266/305 (87%) Query: 14 KVTIMVGGINKMVYLPAKLAEQLGYFKEEGLDVELQSQPAGVDAENELLAGAVQAVVGFY 73 K+TIMVGG K++YLPAKL EQLGYFK+EGLDVE+ SQPAGVDAENELLAGAVQ VVGFY Sbjct: 28 KLTIMVGGAAKIIYLPAKLTEQLGYFKDEGLDVEILSQPAGVDAENELLAGAVQGVVGFY 87 Query: 74 DHSIDLQTKGKEITAITILGQVPGEVELVSTKAAPHFQSMADAKGKTLGVTGLGSSTNFL 133 DH+IDLQ+KGKE+ A+ I GQVPGEVE+VSTKAA F+SMADAKGKTLGVTGLGSST+FL Sbjct: 88 DHTIDLQSKGKEVEALVIFGQVPGEVEMVSTKAADTFKSMADAKGKTLGVTGLGSSTSFL 147 Query: 134 TQYLASRHGITSKQFSVLPVGADNTFIAAMKQGRIDAGMTTEPTASLLLKTGDAQVLVDM 193 TQYLA R G+ S Q+++LPVGADN+FIAA+KQ RIDAGMTTEPT S LLKTGDA+VL+DM Sbjct: 148 TQYLAQRAGVPSTQYTLLPVGADNSFIAAIKQNRIDAGMTTEPTVSQLLKTGDAKVLIDM 207 Query: 194 RTVEGTVKALGGLYPASSVYVQRSWLNSHKEEAQKLARAFVKTLKFINTHTAEQIAEKMP 253 RT+EGT ALGG YPASS YVQR+W+ SHK +A KL+ AF KTL FI TH+AE+IA KMP Sbjct: 208 RTLEGTRAALGGTYPASSFYVQRAWVESHKSDAAKLSHAFAKTLNFIATHSAEEIAAKMP 267 Query: 254 KDYYGSNKALYIQALNNSLPMYSPDGKMPKGGPETVLAVLSGFNPNVKGKHVDLSKTYTD 313 KDYYGSNK LY+ AL SLPM++ DGKMP GPETVL VLS FNP+VKGKH+DL+KTYT+ Sbjct: 268 KDYYGSNKDLYVGALKASLPMFTKDGKMPADGPETVLRVLSAFNPSVKGKHIDLAKTYTN 327 Query: 314 EFVNA 318 +FV A Sbjct: 328 DFVAA 332 >ref|ZP_02881850.1| ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [Burkholderia graminis C4D1M] gb|EDT12095.1| ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [Burkholderia graminis C4D1M] Length = 339 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 231/305 (75%), Positives = 264/305 (86%) Query: 14 KVTIMVGGINKMVYLPAKLAEQLGYFKEEGLDVELQSQPAGVDAENELLAGAVQAVVGFY 73 K+TIMVGG K++YLPA+L EQLGYFK+EGLDVE+ SQPAGVDAENELLAGAVQ VVGFY Sbjct: 28 KITIMVGGAAKIIYLPARLTEQLGYFKDEGLDVEILSQPAGVDAENELLAGAVQGVVGFY 87 Query: 74 DHSIDLQTKGKEITAITILGQVPGEVELVSTKAAPHFQSMADAKGKTLGVTGLGSSTNFL 133 DH+IDLQ+KGKE+ A+ I GQVPGEVE+VSTKAA F+SMADAKGKTLGVTGLGSST+FL Sbjct: 88 DHTIDLQSKGKEVEALVIFGQVPGEVEMVSTKAADTFKSMADAKGKTLGVTGLGSSTSFL 147 Query: 134 TQYLASRHGITSKQFSVLPVGADNTFIAAMKQGRIDAGMTTEPTASLLLKTGDAQVLVDM 193 TQYLA R G+ S Q+++LPVGADN+FIAA+KQ RIDAGMTTEPT S LLKTGDA+VL+DM Sbjct: 148 TQYLAQRAGVPSTQYTLLPVGADNSFIAAIKQNRIDAGMTTEPTVSQLLKTGDAKVLIDM 207 Query: 194 RTVEGTVKALGGLYPASSVYVQRSWLNSHKEEAQKLARAFVKTLKFINTHTAEQIAEKMP 253 RT+EGT ALGG YPASS YVQR+W SHK +A KL+ AF KTL FI TH+AE IA KMP Sbjct: 208 RTLEGTRAALGGTYPASSFYVQRAWAESHKSDAAKLSHAFAKTLNFIATHSAEDIAAKMP 267 Query: 254 KDYYGSNKALYIQALNNSLPMYSPDGKMPKGGPETVLAVLSGFNPNVKGKHVDLSKTYTD 313 KDYYGSNK LYI AL SLPM++ DGKMP GPETVL VLS FNP+VKGKH+DL+KTYT+ Sbjct: 268 KDYYGSNKDLYIGALKASLPMFTKDGKMPADGPETVLRVLSAFNPSVKGKHIDLAKTYTN 327 Query: 314 EFVNA 318 +FV A Sbjct: 328 DFVAA 332