BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4259.p (284 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776776.1| nitrate/sulfonate/bicarbonate ABC transporte... 431 e-119 ref|YP_004753120.1| nitrate/sulfonate/bicarbonate ABC transporte... 389 e-106 ref|YP_001860130.1| binding-protein-dependent transport systems ... 368 e-100 ref|ZP_02881852.1| binding-protein-dependent transport systems i... 366 2e-99 ref|YP_004231018.1| binding-protein-dependent transport systems ... 365 4e-99 >ref|YP_003776776.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64868.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 284 Score = 431 bits (1107), Expect = e-119, Method: Composition-based stats. Identities = 275/284 (96%), Positives = 278/284 (97%) Query: 1 MTQAQASHSAATMDIAAVEAEAQRKIRARKQLVIGLRIAILVIVLGGWEGGARLGWIDPF 60 MTQAQAS SAATMDIAAVEAEAQRKIRARKQLVIGLRIAILVIVLGGWE AR+GWIDPF Sbjct: 1 MTQAQASQSAATMDIAAVEAEAQRKIRARKQLVIGLRIAILVIVLGGWEVCARIGWIDPF 60 Query: 61 FFSQPSAIVAQIVEWMVEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIILGRNKLL 120 FFSQPS IVAQI +WMVEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVIAGI+LGRNKLL Sbjct: 61 FFSQPSLIVAQIYDWMVEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIVLGRNKLL 120 Query: 121 SDVFSLYIQIANSIPRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRY 180 SDVFSLYIQIANSIPRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRY Sbjct: 121 SDVFSLYIQIANSIPRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRY 180 Query: 181 MIANAQILGASPRQVTMAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLIS 240 MIANAQILGAS RQVTMAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLIS Sbjct: 181 MIANAQILGASRRQVTMAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLIS 240 Query: 241 TAQGAFNASGVFAAMIVLAVVALAADWLLHALERRLLKWRPQAF 284 TAQGAFNASGVFAAMIVLAVVALAADWLLHALERRLLKWRPQAF Sbjct: 241 TAQGAFNASGVFAAMIVLAVVALAADWLLHALERRLLKWRPQAF 284 >ref|YP_004753120.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK62297.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Collimonas fungivorans Ter331] Length = 284 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 242/284 (85%), Positives = 255/284 (89%) Query: 1 MTQAQASHSAATMDIAAVEAEAQRKIRARKQLVIGLRIAILVIVLGGWEGGARLGWIDPF 60 M Q Q + +A VE EAQRKI+ R LVI LR+AILV+ LGGWE ARL WIDPF Sbjct: 1 MNQVQTIDKLSAASLATVEQEAQRKIKQRYWLVISLRVAILVLTLGGWELAARLQWIDPF 60 Query: 61 FFSQPSAIVAQIVEWMVEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIILGRNKLL 120 FFSQPS IV QI +W+VEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVI GI+LGRNKLL Sbjct: 61 FFSQPSLIVVQIYDWIVEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVICGILLGRNKLL 120 Query: 121 SDVFSLYIQIANSIPRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRY 180 SDVFS+YIQ+ANSIPRVVLGSIFVIA GLGMASKVALAVVMVFFVVF NAFQGVREADRY Sbjct: 121 SDVFSIYIQVANSIPRVVLGSIFVIALGLGMASKVALAVVMVFFVVFGNAFQGVREADRY 180 Query: 181 MIANAQILGASPRQVTMAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLIS 240 MIANAQILGASPRQVTM+VVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLIS Sbjct: 181 MIANAQILGASPRQVTMSVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLIS 240 Query: 241 TAQGAFNASGVFAAMIVLAVVALAADWLLHALERRLLKWRPQAF 284 TAQGAFNASGVFAAMIVLAVVALAAD+LL LE+RLLKWRP AF Sbjct: 241 TAQGAFNASGVFAAMIVLAVVALAADYLLTTLEKRLLKWRPVAF 284 >ref|YP_001860130.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] gb|ACC73084.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] Length = 287 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 228/269 (84%), Positives = 243/269 (90%) Query: 15 IAAVEAEAQRKIRARKQLVIGLRIAILVIVLGGWEGGARLGWIDPFFFSQPSAIVAQIVE 74 +A VE AQ++IR R LVIGLRIA+LV+VLGGWE AR+ WIDPFFFS PS I QIV+ Sbjct: 18 LAQVERIAQKRIRQRNALVIGLRIAVLVLVLGGWEISARMKWIDPFFFSMPSLIFEQIVD 77 Query: 75 WMVEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIILGRNKLLSDVFSLYIQIANSI 134 W V GTSQGPL TQV VTLEET LGF+IGSVAGV GI+LGRNKLLSDVFSLYI+IANSI Sbjct: 78 WFVNGTSQGPLLTQVWVTLEETGLGFIIGSVAGVFCGIVLGRNKLLSDVFSLYIKIANSI 137 Query: 135 PRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRYMIANAQILGASPRQ 194 PRVVLGS+FVIA GLGMASKVALAVVMVFFVVFANAFQGVREADRYMIANAQILGAS RQ Sbjct: 138 PRVVLGSVFVIALGLGMASKVALAVVMVFFVVFANAFQGVREADRYMIANAQILGASRRQ 197 Query: 195 VTMAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLISTAQGAFNASGVFAA 254 VT +VVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLISTAQGAFNASGVFAA Sbjct: 198 VTTSVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLISTAQGAFNASGVFAA 257 Query: 255 MIVLAVVALAADWLLHALERRLLKWRPQA 283 MIVLAVVALAAD+LL A+E+RLLKWRP Sbjct: 258 MIVLAVVALAADYLLTAVEQRLLKWRPNG 286 >ref|ZP_02881852.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] gb|EDT12097.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] Length = 287 Score = 366 bits (940), Expect = 2e-99, Method: Composition-based stats. Identities = 229/272 (84%), Positives = 245/272 (90%) Query: 12 TMDIAAVEAEAQRKIRARKQLVIGLRIAILVIVLGGWEGGARLGWIDPFFFSQPSAIVAQ 71 T + VE AQ++IR R+ LVI LRIA+LV+VLGGWE ARL WIDPFFFS PSAI Q Sbjct: 15 TASLEHVERVAQKRIRQRQLLVISLRIAVLVVVLGGWELSARLKWIDPFFFSMPSAIFDQ 74 Query: 72 IVEWMVEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIILGRNKLLSDVFSLYIQIA 131 IV+W V GTSQGPL TQV VTLEET LGF+IGSVAG+ GI+LGRNKLLSDVFSLYI+IA Sbjct: 75 IVDWFVNGTSQGPLLTQVWVTLEETGLGFIIGSVAGIFCGIVLGRNKLLSDVFSLYIKIA 134 Query: 132 NSIPRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRYMIANAQILGAS 191 NSIPRVVLGS+FVIA GLGMASKVALAVVMVFFVVFANAFQGVREADRYMIANAQILGAS Sbjct: 135 NSIPRVVLGSVFVIALGLGMASKVALAVVMVFFVVFANAFQGVREADRYMIANAQILGAS 194 Query: 192 PRQVTMAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLISTAQGAFNASGV 251 RQVT +VVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLISTAQGAFNASGV Sbjct: 195 RRQVTTSVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLISTAQGAFNASGV 254 Query: 252 FAAMIVLAVVALAADWLLHALERRLLKWRPQA 283 FAAMIVLAVVALAAD+LL A+E+RLLKWRP A Sbjct: 255 FAAMIVLAVVALAADYLLTAVEQRLLKWRPAA 286 >ref|YP_004231018.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1001] gb|ADX57958.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1001] Length = 287 Score = 365 bits (937), Expect = 4e-99, Method: Composition-based stats. Identities = 230/266 (86%), Positives = 243/266 (91%) Query: 18 VEAEAQRKIRARKQLVIGLRIAILVIVLGGWEGGARLGWIDPFFFSQPSAIVAQIVEWMV 77 VE AQ++IR R+ LVI LRIA+LV+VLGGWE ARL WIDPFFFS PSAI QIVEW V Sbjct: 21 VERAAQKRIRQRQLLVISLRIAVLVVVLGGWELAARLKWIDPFFFSMPSAIFDQIVEWFV 80 Query: 78 EGTSQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIILGRNKLLSDVFSLYIQIANSIPRV 137 GTSQGPL TQV VTLEET LGF+IGSVAGV GI+LGRNKLLSDVFSLYI+IANSIPRV Sbjct: 81 NGTSQGPLLTQVWVTLEETGLGFIIGSVAGVFCGIVLGRNKLLSDVFSLYIKIANSIPRV 140 Query: 138 VLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRYMIANAQILGASPRQVTM 197 VLGS+FVIA GLGMASKVALAVVMVFFVVFANAFQGVREADRYMIANAQILGAS RQVT Sbjct: 141 VLGSVFVIALGLGMASKVALAVVMVFFVVFANAFQGVREADRYMIANAQILGASRRQVTT 200 Query: 198 AVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLISTAQGAFNASGVFAAMIV 257 +VVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLISTAQGAFNASGVFAAMIV Sbjct: 201 SVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLISTAQGAFNASGVFAAMIV 260 Query: 258 LAVVALAADWLLHALERRLLKWRPQA 283 LAVVALAAD+LL A+E+RLLKWRP A Sbjct: 261 LAVVALAADYLLTAVEQRLLKWRPAA 286