BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4255.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776772.1| two component response regulator protein [He... 420 e-115 ref|YP_004752189.1| response regulators consisting of a CheY-lik... 308 3e-82 ref|ZP_08274423.1| response regulator transcription regulatory p... 298 5e-79 ref|YP_001022357.1| two component transcriptional regulator [Met... 210 1e-52 ref|YP_003673414.1| winged helix family two component transcript... 207 9e-52 >ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64864.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 217/219 (99%), Positives = 217/219 (99%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAAVLVLDIGLPGIDGFEV 60 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAAVLVLDIGLPGIDGFEV Sbjct: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAAVLVLDIGLPGIDGFEV 60 Query: 61 LRRMRANGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQ 120 LRRMRA GNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQ Sbjct: 61 LRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQ 120 Query: 121 PAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGE 180 PAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGE Sbjct: 121 PAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGE 180 Query: 181 DFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLEKSE 219 DFTINAVEVYVSRIRLKIADSGV IRTIRGFGYMLEKSE Sbjct: 181 DFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSE 219 >ref|YP_004752189.1| response regulators consisting of a CheY-like receiver domain-containing protein and a winged-helix DNA-binding domain-containing protein [Collimonas fungivorans Ter331] gb|AEK61366.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Collimonas fungivorans Ter331] Length = 222 Score = 308 bits (790), Expect = 3e-82, Method: Composition-based stats. Identities = 154/221 (69%), Positives = 190/221 (85%), Gaps = 2/221 (0%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA--LSQRFNAAVLVLDIGLPGIDGF 58 M++LLVEDD VL DG+ R+ HG V V NGNDA L QR +V+VLDIGLPG+DGF Sbjct: 1 MHILLVEDDSVLADGILRIFKGHGMVVDVVRNGNDADALLQRTEISVVVLDIGLPGMDGF 60 Query: 59 EVLRRMRANGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118 EV+RR+RA G++ PVLLLTARD++ DRV+GLELGADDYLVKPFAT ELVAR++AL+RRSA Sbjct: 61 EVIRRLRARGSHIPVLLLTARDSVQDRVYGLELGADDYLVKPFATQELVARVRALLRRSA 120 Query: 119 PQPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPW 178 PQP ++ +GGLSL+ +++RA I+G+ IELS+REW VLEYL+Q ASRVVS+QQIIDA+LPW Sbjct: 121 PQPLEMHLGGLSLNTSSRRAKINGKAIELSVREWAVLEYLLQQASRVVSRQQIIDAILPW 180 Query: 179 GEDFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLEKSE 219 G + T+NAVEVY+SRIRLKIAD+G+ IRTIRGFGYMLEK+E Sbjct: 181 GAELTLNAVEVYISRIRLKIADAGIEIRTIRGFGYMLEKTE 221 >ref|ZP_08274423.1| response regulator transcription regulatory protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF32107.1| response regulator transcription regulatory protein [Oxalobacteraceae bacterium IMCC9480] Length = 222 Score = 298 bits (762), Expect = 5e-79, Method: Composition-based stats. Identities = 154/218 (70%), Positives = 178/218 (81%), Gaps = 2/218 (0%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGN--DALSQRFNAAVLVLDIGLPGIDGF 58 M+VLL EDD VL DG++R L SHG V V+NG+ + + AVLVLDIGLPGIDGF Sbjct: 1 MHVLLAEDDSVLADGIARALRSHGMVVDVVDNGSAVELAIKHAEIAVLVLDIGLPGIDGF 60 Query: 59 EVLRRMRANGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118 EV+RR+R +G PVLLLTARD I DRVHG ELGADDYLVKPF+T ELVAR+KAL+RRSA Sbjct: 61 EVVRRLRLHGMQVPVLLLTARDAIQDRVHGFELGADDYLVKPFSTLELVARLKALVRRSA 120 Query: 119 PQPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPW 178 P+P +L++GGL+LD +RA I R IE S+REW VLEYLMQ ASRVVSKQQIIDA+LPW Sbjct: 121 PKPIELSIGGLTLDTFARRAHIGTRSIEFSVREWAVLEYLMQQASRVVSKQQIIDAILPW 180 Query: 179 GEDFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLE 216 GED T+NAVEVYVSRIRLKIA S +VIRTIRGFGY+LE Sbjct: 181 GEDLTLNAVEVYVSRIRLKIAPSNIVIRTIRGFGYLLE 218 >ref|YP_001022357.1| two component transcriptional regulator [Methylibium petroleiphilum PM1] gb|ABM96122.1| two component transcriptional regulator, winged helix family [Methylibium petroleiphilum PM1] Length = 266 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 116/220 (52%), Positives = 151/220 (68%), Gaps = 3/220 (1%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTV-HTVNNGNDALSQRFNA-AVLVLDIGLPGIDGF 58 M++LL EDDP L + +R L S G+ V HT S + + +L+LDIGL GIDGF Sbjct: 38 MHILLAEDDPALAESTARALRSQGWVVDHTPRGEPVPTSVKTDPYDLLILDIGLIGIDGF 97 Query: 59 EVLRRMRANGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR-S 117 E LRR+R G+ PVL+LTARD I DRVHGLE+GADDYLVKPFA EL+AR+K L RR Sbjct: 98 ETLRRVREQGSTLPVLMLTARDAIEDRVHGLEMGADDYLVKPFALAELIARVKVLTRRHQ 157 Query: 118 APQPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLP 177 A Q + L++GGL +D RA I + ++LS REW VLEYL+ VV K+QI+ A+ Sbjct: 158 ARQGSVLSMGGLRMDLEANRAWIGEQPLDLSAREWAVLEYLLSRVGHVVGKEQILQAISG 217 Query: 178 WGEDFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLEK 217 W + + NAVEVYVSR+R KI +G+ IR +RGFGY++E+ Sbjct: 218 WDDALSENAVEVYVSRLRPKIEPAGLRIRAVRGFGYLVEE 257 >ref|YP_003673414.1| winged helix family two component transcriptional regulator [Methylotenera versatilis 301] gb|ADI28837.1| two component transcriptional regulator, winged helix family [Methylotenera versatilis 301] Length = 227 Score = 207 bits (527), Expect = 9e-52, Method: Composition-based stats. Identities = 109/223 (48%), Positives = 154/223 (69%), Gaps = 3/223 (1%) Query: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQ--RFNAAVLVLDIGLPGIDGF 58 M +LLVEDD L + +R L S + V V NG+ ++ + ++LD+GLPG+DGF Sbjct: 1 MRILLVEDDTHLGESTARALRSQQWFVDWVRNGDSVINMIGLVSYDAIILDVGLPGMDGF 60 Query: 59 EVLRRMRANGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR-S 117 E+L +R+ N+ PVL+LTARDTI DRV+G +LGADDYLVKPFA ELVARI+A+ RR Sbjct: 61 EILHSLRSQNNSLPVLMLTARDTIDDRVYGFQLGADDYLVKPFALKELVARIQAITRRFH 120 Query: 118 APQPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLP 177 Q ++ G L +D KRA + + +EL REW VL Y++ + +VVSK+QI++A+ Sbjct: 121 TRQHNEIIFGILRIDLTAKRAYLSDKSLELLPREWAVLVYILNNLGKVVSKEQILEAISD 180 Query: 178 WGEDFTINAVEVYVSRIRLKIADSGVVIRTIRGFGYMLEKSEN 220 W E + NA+EVY+SR+R K+ +G+ IRTIRGFGY++E+S N Sbjct: 181 WDEAPSSNAIEVYISRLRTKLTPAGISIRTIRGFGYLIEESVN 223