BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4254.p (481 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776771.1| periplasmic sensor signal transduction histi... 838 0.0 ref|ZP_08274424.1| hypothetical protein IMCC9480_2943 [Oxalobact... 435 e-120 ref|YP_004752190.1| ATP-binding protein [Collimonas fungivorans ... 304 2e-80 ref|YP_545417.1| periplasmic sensor signal transduction histidin... 268 2e-69 ref|NP_840430.1| sensory transduction histidine kinase [Nitrosom... 258 1e-66 >ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ64863.1| periplasmic sensor signal transduction histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 419/451 (92%), Positives = 439/451 (97%) Query: 30 HASIRRDLLKWLIAPLLLLNLVGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQER 89 H+SIRRDLLKWLIAPLLL+NL+GAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQER Sbjct: 5 HSSIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQER 64 Query: 90 TTAELTQQAEQILRSNHSDTTFFAVRNSQGEILVGDKGFPQLPESEIFDRPFNYDGEMRG 149 TTAELTQQAEQILRSNHSDTTFFAVRN++G+I+VGDKGFPQLP S++FDRP NYDGEMRG Sbjct: 65 TTAELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPASDVFDRPINYDGEMRG 124 Query: 150 EPVRISAMQVRVKNGVISVAVAETIRKRDRAHYTILLSFLLLDGGLTFGSLSVVLIAVRR 209 EPVRI+AMQVRVKNGVI VAVAETIRKRDRAHYTILLSFL+LDG LTF S+ VVL+AVRR Sbjct: 125 EPVRIAAMQVRVKNGVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLVAVRR 184 Query: 210 GLRPLKSLQRNLEQRGHGKLGAIDGIGAPVELQPLIVAMNELMARISKGEQAQQNFMADV 269 GLRPLKSLQRNLEQR HGKLGAIDG GAPVELQPLIVAMNELMARI+KGEQAQQNFMADV Sbjct: 185 GLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNFMADV 244 Query: 270 AHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLF 329 AHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLF Sbjct: 245 AHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLF 304 Query: 330 ESRKLEELSLHKLVEESVQHFIEEADKKHIDLGFDLQPARLRGDRFLLADLIDNLIDNAV 389 ESRKLEELSL KLVEESVQHFIEEADKK IDLGFDL+PARLRGDRFLL+DLIDNLIDNAV Sbjct: 305 ESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDLRPARLRGDRFLLSDLIDNLIDNAV 364 Query: 390 RYSPLHGTVTVRCLEEEGATVLSVEDSGPGIAPEHRELIFDRYYRANDKIAGSGLGLAIV 449 RYSP HGTVTVRCLEE+ ATVLSVEDSGPGIAPEHRELIFDR+YRANDK+AGSGLGLAIV Sbjct: 365 RYSPPHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYRANDKVAGSGLGLAIV 424 Query: 450 REIAHDHGGVITVDCKEQGQGTIFTVRFPLA 480 REIAHDHGGVI+VDCKEQGQGTIFTVRFPLA Sbjct: 425 REIAHDHGGVISVDCKEQGQGTIFTVRFPLA 455 >ref|ZP_08274424.1| hypothetical protein IMCC9480_2943 [Oxalobacteraceae bacterium IMCC9480] gb|EGF32108.1| hypothetical protein IMCC9480_2943 [Oxalobacteraceae bacterium IMCC9480] Length = 452 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 228/447 (51%), Positives = 303/447 (67%) Query: 32 SIRRDLLKWLIAPLLLLNLVGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTT 91 SIR +LLKWLIAPLL +NL+GA LTY LAW+PAQ AFDQ+L D+ W L ++R Sbjct: 4 SIRINLLKWLIAPLLAINLIGAALTYRLAWVPAQMAFDQSLADAAWALVPRLRDNDGTIL 63 Query: 92 AELTQQAEQILRSNHSDTTFFAVRNSQGEILVGDKGFPQLPESEIFDRPFNYDGEMRGEP 151 +L QQAEQ+LR +H D +F VR+ G+++ GDK FP LP + + P Y G MRGE Sbjct: 64 VDLPQQAEQVLRLDHVDEIYFIVRDQAGQVVAGDKDFPSLPAPQKLNDPVAYSGTMRGEA 123 Query: 152 VRISAMQVRVKNGVISVAVAETIRKRDRAHYTILLSFLLLDGGLTFGSLSVVLIAVRRGL 211 +R+ ++ RV V+S++V+ET+RKR I +L+G LT S+++V +AV RGL Sbjct: 124 IRMIVLKARVGTQVVSISVSETLRKRSLIRTEIFAGLFVLEGLLTAISIALVWLAVTRGL 183 Query: 212 RPLKSLQRNLEQRGHGKLGAIDGIGAPVELQPLIVAMNELMARISKGEQAQQNFMADVAH 271 PLK +Q +L+ R H L + + P EL+PL+ A+N L+ ++ G AQQ F+A+VAH Sbjct: 184 LPLKKMQADLDARSHDTLAPVSDVHLPRELRPLVDAINTLLGKVQAGAAAQQAFLANVAH 243 Query: 272 QLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLFES 331 QLRTPL L++QLE L +H +TA S +M ++ RMIR + QLLALAR+EP E Sbjct: 244 QLRTPLAALQMQLEWLQQRHPQGHETAHSATLMLTATARMIRHTNQLLALARAEPSRLEK 303 Query: 332 RKLEELSLHKLVEESVQHFIEEADKKHIDLGFDLQPARLRGDRFLLADLIDNLIDNAVRY 391 + EE+ L L+E++VQ F+E+A +K IDLGFDLQPA LR D FLL DLIDNLIDNA+RY Sbjct: 304 DRFEEVDLCHLIEDAVQVFVEQAVRKQIDLGFDLQPAPLRADPFLLRDLIDNLIDNAIRY 363 Query: 392 SPLHGTVTVRCLEEEGATVLSVEDSGPGIAPEHRELIFDRYYRANDKIAGSGLGLAIVRE 451 SP TVTV C EE A + VEDSGPGIA RELIF+R+YR ++ +AGSGLGLAIVR+ Sbjct: 364 SPAGSTVTVSCRCEEEAVLFLVEDSGPGIAESRRELIFNRFYRLDESVAGSGLGLAIVRD 423 Query: 452 IAHDHGGVITVDCKEQGQGTIFTVRFP 478 I H + + G+GT F+VRFP Sbjct: 424 IVLAHDAEMQLGAGPGGKGTTFSVRFP 450 >ref|YP_004752190.1| ATP-binding protein [Collimonas fungivorans Ter331] gb|AEK61367.1| ATP-binding region, ATPase-like:Histidine kinase [Collimonas fungivorans Ter331] Length = 349 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 152/278 (54%), Positives = 202/278 (72%), Gaps = 1/278 (0%) Query: 202 VVLIAVRRGLRPLKSLQRNLEQRGHGKLGAIDGIGAPVELQPLIVAMNELMARISKGEQA 261 V+ +A+ RGL PLK + +LE R L A+D P+EL P++ A+N L+ ++ + +A Sbjct: 62 VIWLALGRGLLPLKKMTADLEARSDDDLSALDQRHVPLELSPVVTAINRLLDKVQQDAKA 121 Query: 262 QQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLAL 321 QQNF+A++AHQLRTPL G + QLE L KH +P++A S+A+M SS ERMIRQ+ QLL L Sbjct: 122 QQNFLANMAHQLRTPLAGFRTQLEWLRQKHAGEPESAHSIALMTSSTERMIRQTNQLLTL 181 Query: 322 ARSEPGLFESRKLEELSLHKLVEESVQHFIEEADKKHIDLGFDLQPARLRGDRFLLADLI 381 AR+EP FE +L + L++LVEES+QHF+E+A +K+IDLGF+LQP R+ GD FLL DLI Sbjct: 182 ARAEPAKFEKERLRVVELNRLVEESIQHFVEQAHRKNIDLGFNLQPTRVMGDHFLLRDLI 241 Query: 382 DNLIDNAVRYSPLHGTVTVRCLEEEGATVLSVEDSGPGIAPEHRELIFDRYYRANDKIAG 441 DNLIDNA+RYSP G VTV L + + SVEDSGPGI P +ELIF+R+ R +D +AG Sbjct: 242 DNLIDNAIRYSPQGGKVTVSSLHGKDGGIFSVEDSGPGIKPSEQELIFNRFRRLDDSVAG 301 Query: 442 SGLGLAIVREIAHDHGGVITVDCKEQGQGTIFTVRFPL 479 +GLGLAIVR+IA DHG I V+ G GT+F+V FP Sbjct: 302 NGLGLAIVRDIAKDHGARIMVEPATAG-GTVFSVLFPF 338 >ref|YP_545417.1| periplasmic sensor signal transduction histidine kinase [Methylobacillus flagellatus KT] gb|ABE49576.1| periplasmic sensor signal transduction histidine kinase [Methylobacillus flagellatus KT] Length = 452 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 160/439 (36%), Positives = 253/439 (57%), Gaps = 11/439 (2%) Query: 45 LLLLNLVGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTTAELTQQAEQILRS 104 L L VG Y++A PA+ +DQ+L+ + L + Q +LRS Sbjct: 19 LTALVAVGILTDYFMALEPAREVYDQHLLKLAYNLERSLPDDPGEWHGAYPQIERSLLRS 78 Query: 105 --NHSDTTFFAVRNSQGEILVGDKGFP-QLPESEIFDRPFNYDGEMRGEPVRISAMQVRV 161 ++ D A+ + QG+ L G P QLP ++ +P+ YD E +G+P+R+ A++ V Sbjct: 79 EQDNYDAAKAAIFDLQGQFLAGVADLPIQLPSAD--HKPYFYDAEYQGDPIRVVAIKSPV 136 Query: 162 KNGVISVAVAETIRKRDRAHYTILLSFLLLDGGLTFGSLSVVLIAVRRGLRPLKSLQRNL 221 + V+ +A ET KR+R L+ ++ + S+ V+ + V RGL+PL ++ + Sbjct: 137 LDAVLYLA--ETTYKRNRLVQKTLIHMIVPELVFAVFSIVVLWVGVGRGLQPLAQIRAQI 194 Query: 222 EQRGHGKLGAIDGIGAPVELQPLIVAMNELMARISKGEQAQQNFMADVAHQLRTPLTGLK 281 R L +D APVE++ +IVA+N L+AR+ + + Q F+A+ AHQLRTPL GL+ Sbjct: 195 NARSETDLSPMDEGKAPVEVREIIVALNSLLARLDRSLKLQNQFLANAAHQLRTPLAGLQ 254 Query: 282 LQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLFESRKLEELSLHK 341 +QLEL + Q + +S M S R++R + QLLALAR+E G E K EL + Sbjct: 255 MQLELASE--QSPEERMQSHERMLVSTRRIVRLANQLLALARAE-GEGEVNKFAELDISN 311 Query: 342 LVEESVQHFIEEADKKHIDLGFDLQPARLRGDRFLLADLIDNLIDNAVRYSPLHGTVTVR 401 +E ++ AD K IDLGFDL PA++ G + + +++ NL+DNA+RY+P+HG +T+R Sbjct: 312 AIEAMATEWLLRADAKSIDLGFDLYPAKVSGSLWQIQEMLANLVDNALRYTPMHGNITIR 371 Query: 402 CLEEEGATVLSVEDSGPGIAPEHRELIFDRYYRANDKIAGSGLGLAIVREIAHDHGGVIT 461 C ++E V+ VED+GPGI + E +F+R+YR ++ G GLGL+IVREI HGG +T Sbjct: 372 CKQQEQKVVIEVEDNGPGIPQDQHENVFNRFYRLDEDPEGCGLGLSIVREIVRHHGGQVT 431 Query: 462 VDCK-EQGQGTIFTVRFPL 479 + GQG + ++ P+ Sbjct: 432 LQTPVHHGQGLLVRIQLPV 450 >ref|NP_840430.1| sensory transduction histidine kinase [Nitrosomonas europaea ATCC 19718] emb|CAD84254.1| Sensory transduction histidine kinases [Nitrosomonas europaea ATCC 19718] Length = 461 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 158/423 (37%), Positives = 236/423 (55%), Gaps = 4/423 (0%) Query: 57 YWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTTAELTQQAEQILRSNHSDTTFFAVRN 116 Y LA A A+D +L ++ + A ++ LT +AE +LR + D FFAVR+ Sbjct: 35 YRLAQETADTAYDHSLNNAALDIAAYIQTVGLSPKLRLTPEAEAMLRHDAVDKIFFAVRD 94 Query: 117 SQGEILVGDKGFPQLPESEIFDRPFNYDGEMRGEPVRISAMQVRVKNGVISVAVAETIRK 176 S ++L+GD P P + I RP D +GE +R + + V I++ VAET+R+ Sbjct: 95 SNKQLLIGDAQLPAYPGA-IHKRPVFIDDVYQGEKIRATTQLIMVDANEITITVAETMRE 153 Query: 177 RDRAHYTILLSFLLLDGGLTFGSLSVVLIAVRRGLRPLKSLQRNLEQRGHGKLGAIDGIG 236 R+ A IL + ++ + + +L V+ VRRGL PL ++ + R L A+D Sbjct: 154 REHASNRILAATIIPNLIIIAATLLVIYFGVRRGLAPLVHVENQIASRSPRDLRALDIGH 213 Query: 237 APVELQPLIVAMNELMARISKGEQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPD 296 AP E++P++ +NEL + AQQ F+AD AHQLRTPL GL+ Q+EL+ + + + Sbjct: 214 APREIRPMLTRLNELFESLRTAAAAQQRFLADAAHQLRTPLAGLQTQIELVAAEGKYVRN 273 Query: 297 TARSLAMMNSSVERMIRQSRQLLALARSEPGLFESRKLEELSLHKLVEESVQHFIEEADK 356 R LA + + ER+ QLL A++EP ++ ++LH+L E + FI+ A Sbjct: 274 DER-LARIEEAAERIAHLVTQLLIYAQTEPAASANQTFHPVALHELAESAASTFIDRALA 332 Query: 357 KHIDLGFDLQPARLRGDRFLLADLIDNLIDNAVRYSPLHGTVTVRCLEEEGATVLSVEDS 416 K IDLGF++QPA G ++L + + NLIDNA+RY P T+TVR L+VED+ Sbjct: 333 KDIDLGFEIQPAVAEGIAWMLREALGNLIDNALRYCPAGSTITVRSGVHSSRPCLAVEDN 392 Query: 417 GPGIAPEHRELIFDRYYRANDKIAGS-GLGLAIVREIAHDHGGVITVDCKEQGQGTIFTV 475 GPGI PE + +F+R+YR I+G GLGL IV+EIAH H IT + G T+ Sbjct: 393 GPGIPPEEHKKVFERFYRIPGSISGGCGLGLPIVQEIAHLHAATITFS-RPANSGLTVTL 451 Query: 476 RFP 478 FP Sbjct: 452 TFP 454