BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4251.p (219 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776770.1| transmembrane protein [Herbaspirillum serope... 348 3e-94 ref|YP_004754353.1| putative transmembrane protein [Collimonas f... 229 3e-58 ref|YP_259833.2| hypothetical protein PFL_2726 [Pseudomonas fluo... 223 2e-56 ref|YP_348626.1| hypothetical protein Pfl01_2895 [Pseudomonas fl... 213 2e-53 ref|YP_004354720.1| hypothetical protein PSEBR_a3394 [Pseudomona... 211 7e-53 >ref|YP_003776770.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64862.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 348 bits (894), Expect = 3e-94, Method: Composition-based stats. Identities = 186/218 (85%), Positives = 202/218 (92%), Gaps = 1/218 (0%) Query: 1 MSVARHIVQVHPRLLIGIAIGIAAATVLPASTWIGRSLIGWNAGVWFYLLSLWVMMLRAD 60 MSVAR IVQVHPRLLIG+A+GI AA LPA+TW GR L+GWNAGVWFYLLSLW+MMLRAD Sbjct: 1 MSVARQIVQVHPRLLIGLAVGIVAAVFLPATTWTGRCLVGWNAGVWFYLLSLWLMMLRAD 60 Query: 61 AKAVKRLAETEDESAHVVLVMVCVAAIASLLAILLELGGSSHHDERGRLLRYAFTASTVF 120 A+AV+RLAETEDESA VVLVMVCVAA+ASLLAILLEL G+SH D R +LLRYAFTASTVF Sbjct: 61 AEAVRRLAETEDESAQVVLVMVCVAAVASLLAILLELAGNSHGD-RSKLLRYAFTASTVF 119 Query: 121 GSWALIGTIFTLHYARLFYADDDDPEALPLRFPDGIRNPGYWDFLYFAFTISVAVQTSDV 180 G+W LIGTIFTLHYARLFYA+DDDP+ALPLRFPDG R P YWDFLYF+FTISVAVQTSDV Sbjct: 120 GAWLLIGTIFTLHYARLFYAEDDDPQALPLRFPDGQRQPDYWDFLYFSFTISVAVQTSDV 179 Query: 181 AVASRALRKSVLAHSLICFVFNAAIIGLSINIAAGLAG 218 VA+RALRK+VLAHSLICFVFNAAIIGLSINIAAGLAG Sbjct: 180 GVATRALRKTVLAHSLICFVFNAAIIGLSINIAAGLAG 217 >ref|YP_004754353.1| putative transmembrane protein [Collimonas fungivorans Ter331] gb|AEK63530.1| putative transmembrane protein [Collimonas fungivorans Ter331] Length = 235 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 120/214 (56%), Positives = 155/214 (72%), Gaps = 2/214 (0%) Query: 5 RHIVQVHPRLLIGIAIGIAAATVLPASTWIGRSLIGWNAGVWFYLLSLWVMMLRADAKAV 64 R + HPRL+I + IG A + P S+ + R LIGWNAGVW YL +LW MM+RA+A V Sbjct: 24 RLVFHTHPRLMIALIIGFAVWAIQPTSSHLTRLLIGWNAGVWSYLATLWWMMVRANAGQV 83 Query: 65 KRLAETEDESAHVVLVMVCVAAIASLLAILLELGGSSHHDERGRLLRYAFTASTVFGSWA 124 KR A EDE+ +LV++CVAA++S+ A++L L + + LRY FT TV GSW Sbjct: 84 KRRAAVEDENDTTILVIICVAAVSSIGAVVLGLAHTQDFLPGPKELRYMFTGMTVLGSWF 143 Query: 125 LIGTIFTLHYARLFYADDDDPEALPLRFPDGIRNPGYWDFLYFAFTISVAVQTSDVAVAS 184 L+GTIF LHYARLFYA D LPLRFPD +NP YWDFLYF+FT++VAVQTSDV++ + Sbjct: 144 LVGTIFALHYARLFYACAGD--KLPLRFPDDEKNPDYWDFLYFSFTMAVAVQTSDVSIMT 201 Query: 185 RALRKSVLAHSLICFVFNAAIIGLSINIAAGLAG 218 R++RK VL S++ F+FN+AI+GLSINIAAGL G Sbjct: 202 RSMRKIVLMQSVLTFLFNSAILGLSINIAAGLVG 235 >ref|YP_259833.2| hypothetical protein PFL_2726 [Pseudomonas fluorescens Pf-5] gb|AAY91999.2| membrane protein of unknown function, DUF1345 family [Pseudomonas fluorescens Pf-5] Length = 213 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 126/210 (60%), Positives = 151/210 (71%), Gaps = 2/210 (0%) Query: 7 IVQVHPRLLIGIAIGIAAATVLPASTWIGRSLIGWNAGVWFYLLSLWVMMLRADAKAVKR 66 +++ HPRL IG+ IG A + PA T G+ LIGWNA VW YL + + +RA A V+R Sbjct: 4 VIRTHPRLTIGVLIGCAIGLLAPAQTLTGKILIGWNAAVWSYLALMLWLTVRARADEVRR 63 Query: 67 LAETEDESAHVVLVMVCVAAIASLLAILLELGGSSHHDERGRLLRYAFTASTVFGSWALI 126 +AE EDE+A +VL++VCVAAIASL+AI LEL GS D RL+ Y FT TV GSW L+ Sbjct: 64 IAEAEDENAGLVLLIVCVAAIASLVAITLELVGSKDLDSTQRLVHYGFTGLTVIGSWLLV 123 Query: 127 GTIFTLHYARLFYADDDDPEALPLRFPDGIRNPGYWDFLYFAFTISVAVQTSDVAVASRA 186 G IF+LHYARL+Y D A LRF +G NP YWDFLYF+FTI VAVQTSDV VA+R Sbjct: 124 GVIFSLHYARLYYTWDGKEPA--LRFAEGPTNPDYWDFLYFSFTIGVAVQTSDVGVATRE 181 Query: 187 LRKSVLAHSLICFVFNAAIIGLSINIAAGL 216 LRK VLA SLI F+FN AI+G SINIAAGL Sbjct: 182 LRKIVLAQSLIGFLFNTAILGFSINIAAGL 211 >ref|YP_348626.1| hypothetical protein Pfl01_2895 [Pseudomonas fluorescens Pf0-1] gb|ABA74636.1| putative membrane protein [Pseudomonas fluorescens Pf0-1] Length = 213 Score = 213 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 120/214 (56%), Positives = 148/214 (69%), Gaps = 2/214 (0%) Query: 5 RHIVQVHPRLLIGIAIGIAAATVLPASTWIGRSLIGWNAGVWFYLLSLWVMMLRADAKAV 64 R + + HPRL G+A + PA + I + LIGWNAG+W YL+ + + +RA A V Sbjct: 2 RFLARTHPRLSAAALFGLAVGLLTPADSVISKILIGWNAGIWTYLILMLWLTIRAKAPDV 61 Query: 65 KRLAETEDESAHVVLVMVCVAAIASLLAILLELGGSSHHDERGRLLRYAFTASTVFGSWA 124 KR+AE EDE+A +VL +VC+AA+ASL I +EL GS + +LL Y FTA TV GSW Sbjct: 62 KRIAEVEDENAGLVLFVVCIAALASLATITVELAGSKDLETTRKLLHYGFTALTVIGSWL 121 Query: 125 LIGTIFTLHYARLFYADDDDPEALPLRFPDGIRNPGYWDFLYFAFTISVAVQTSDVAVAS 184 LIG IF +HYARLFY D A LRF +G+ P YWDFLYF+FTI VAVQT+DV VA+ Sbjct: 122 LIGVIFCVHYARLFYTWDGKEPA--LRFSEGLTTPDYWDFLYFSFTIGVAVQTADVGVAT 179 Query: 185 RALRKSVLAHSLICFVFNAAIIGLSINIAAGLAG 218 R +RK VLA SLI FVFN AI+G SINIAAGL G Sbjct: 180 REIRKIVLAQSLIGFVFNTAILGFSINIAAGLFG 213 >ref|YP_004354720.1| hypothetical protein PSEBR_a3394 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69716.1| Conserved hypothetical protein; putative membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 213 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 118/212 (55%), Positives = 150/212 (70%), Gaps = 2/212 (0%) Query: 7 IVQVHPRLLIGIAIGIAAATVLPASTWIGRSLIGWNAGVWFYLLSLWVMMLRADAKAVKR 66 + + HPRL +G+A ++P + I + LIGWN GVW YL+ + + +RA A V+R Sbjct: 4 LARTHPRLSSATVLGLAVGILVPVDSIISKILIGWNVGVWTYLVLMSWLTVRAKAPDVRR 63 Query: 67 LAETEDESAHVVLVMVCVAAIASLLAILLELGGSSHHDERGRLLRYAFTASTVFGSWALI 126 +AE EDE+A +VL++VC+AA+ASL I LEL GS + G+LL Y FTA TV GSW LI Sbjct: 64 IAEIEDENAGLVLLVVCIAALASLATITLELAGSRDLNAAGKLLHYGFTAMTVIGSWLLI 123 Query: 127 GTIFTLHYARLFYADDDDPEALPLRFPDGIRNPGYWDFLYFAFTISVAVQTSDVAVASRA 186 G IF++HYARL+Y + A LRF +G+ P YWDFLYF+FTI VAVQT+DV VA+R Sbjct: 124 GVIFSVHYARLYYTWEGKEPA--LRFAEGLTTPNYWDFLYFSFTIGVAVQTADVGVATRQ 181 Query: 187 LRKSVLAHSLICFVFNAAIIGLSINIAAGLAG 218 LRK VLA SLI FVFN AI+G SINIAAGL G Sbjct: 182 LRKIVLAQSLIGFVFNTAILGFSINIAAGLFG 213