BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.4246.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776766.1| two-component system transcription regulator... 565 e-159 ref|ZP_01463079.1| two-component system regulatory protein [Stig... 357 1e-96 ref|YP_004236353.1| response regulator receiver sensor signal tr... 339 3e-91 ref|YP_972309.1| response regulator receiver sensor signal trans... 330 2e-88 ref|YP_004488356.1| response regulator receiver sensor signal tr... 322 4e-86 >ref|YP_003776766.1| two-component system transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64858.1| two-component system transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 372 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 288/307 (93%), Positives = 297/307 (96%) Query: 1 MPDMDGFELAELIRGSERTRNVPLIFVTAGVRDERRQFKGYESGAVDFLYKPIEPHILRN 60 MPDMDGFELAELIRGSERTRNVPLIFVTAGVRDERR FKGYESGAVDFLYKPIEPHILRN Sbjct: 66 MPDMDGFELAELIRGSERTRNVPLIFVTAGVRDERRLFKGYESGAVDFLYKPIEPHILRN 125 Query: 61 KADVFFQLYRQKQLLALELKQRTETLRMNEMFVAILGHDLRNPLSAVVMAATLLQRTYKE 120 KA+VFFQLYRQKQ LALEL++RTETLR+NEMFVAILGHDLRNPLSAV+MAATLLQRTYKE Sbjct: 126 KAEVFFQLYRQKQQLALELRERTETLRLNEMFVAILGHDLRNPLSAVMMAATLLQRTYKE 185 Query: 121 EVAQKASQQILNGGKRMAKLIDNMLDLARARLAGGIPLVRASACLGEITERVVQEYQATY 180 EVAQKASQQILNGGKRMAKLI+NMLDLARARLAGGIPL RASACLGEITERVVQEYQATY Sbjct: 186 EVAQKASQQILNGGKRMAKLIENMLDLARARLAGGIPLARASACLGEITERVVQEYQATY 245 Query: 181 PGSVVERRIEGDDNGYWDGDRLGQVVANLLGNALQHGAADSPICIGIDGRSEHEVVMVIA 240 PGSV+ERRIEGDDNGYWDGDRL QV ANLLGNALQHG PICIGIDGRSEHEVVMVIA Sbjct: 246 PGSVIERRIEGDDNGYWDGDRLAQVAANLLGNALQHGEPGHPICIGIDGRSEHEVVMVIA 305 Query: 241 NRGVIPAALLPVIFDPFRGGEREAGRKEGLGLGLFIAQQIVKSHGGSISMSSDDQVQTMV 300 NRGVIPA LLPVIFDPFRGGEREAGRKEGLGLGLFIAQQIVK+HGGSISMSSDDQ+QTMV Sbjct: 306 NRGVIPADLLPVIFDPFRGGEREAGRKEGLGLGLFIAQQIVKAHGGSISMSSDDQLQTMV 365 Query: 301 TVRLPRR 307 TVRLPRR Sbjct: 366 TVRLPRR 372 >ref|ZP_01463079.1| two-component system regulatory protein [Stigmatella aurantiaca DW4/3-1] ref|YP_003952641.1| sensor protein [Stigmatella aurantiaca DW4/3-1] gb|EAU66122.1| two-component system regulatory protein [Stigmatella aurantiaca DW4/3-1] gb|ADO70814.1| Sensor protein [Stigmatella aurantiaca DW4/3-1] Length = 373 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 179/307 (58%), Positives = 232/307 (75%) Query: 1 MPDMDGFELAELIRGSERTRNVPLIFVTAGVRDERRQFKGYESGAVDFLYKPIEPHILRN 60 MP+MDGFELAEL+RG ERTR+VP+IFVTAGVRD+ R FKGY++GAVDFLYKP+EPH+LRN Sbjct: 60 MPEMDGFELAELMRGMERTRHVPIIFVTAGVRDQHRLFKGYDAGAVDFLYKPLEPHVLRN 119 Query: 61 KADVFFQLYRQKQLLALELKQRTETLRMNEMFVAILGHDLRNPLSAVVMAATLLQRTYKE 120 KA+VFFQLYRQKQ LA +L + TETLR+NEMF A+LGHDLRNPLSA++ +A LL R + Sbjct: 120 KAEVFFQLYRQKQQLAQQLHELTETLRLNEMFTAVLGHDLRNPLSAILTSADLLHRRTTD 179 Query: 121 EVAQKASQQILNGGKRMAKLIDNMLDLARARLAGGIPLVRASACLGEITERVVQEYQATY 180 E +KA+ ++L+ GKRM ++I+++LDLARARLAGGI L R G++ R+VQE+QA + Sbjct: 180 EAVRKAAGRMLSSGKRMGRMIEDVLDLARARLAGGISLKRGETDFGQLVHRMVQEHQAAF 239 Query: 181 PGSVVERRIEGDDNGYWDGDRLGQVVANLLGNALQHGAADSPICIGIDGRSEHEVVMVIA 240 P +E EG+ G WD DRL QV +NL+GNALQHG A P+ I +DG V+ +A Sbjct: 240 PQHRIEVLQEGNLVGDWDSDRLAQVASNLIGNALQHGDAGEPVQIRLDGTHGDFVLFSVA 299 Query: 241 NRGVIPAALLPVIFDPFRGGEREAGRKEGLGLGLFIAQQIVKSHGGSISMSSDDQVQTMV 300 N G IP L +FDPFRGG+R+ GR EGLGLGL+I QQI+ +H GS+++ T+ Sbjct: 300 NLGAIPPELKGSLFDPFRGGQRQRGRSEGLGLGLYIVQQIILAHQGSVNVHDGSGRHTVF 359 Query: 301 TVRLPRR 307 V +PR+ Sbjct: 360 RVEIPRQ 366 >ref|YP_004236353.1| response regulator receiver sensor signal transduction histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX47786.1| response regulator receiver sensor signal transduction histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 390 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 166/306 (54%), Positives = 227/306 (74%), Gaps = 1/306 (0%) Query: 1 MPDMDGFELAELIRGSERTRNVPLIFVTAGVRDERRQFKGYESGAVDFLYKPIEPHILRN 60 MP+M+GFELAELIRGSERTR++PLIF+TAG RD+ QFKGYE+GAVDFLYKPI+PH+L N Sbjct: 75 MPEMNGFELAELIRGSERTRHIPLIFMTAGSRDQNWQFKGYENGAVDFLYKPIDPHMLVN 134 Query: 61 KADVFFQLYRQKQLLALELKQRTETLRMNEMFVAILGHDLRNPLSAVVMAATLLQRTYKE 120 KA+VFF+L+RQK LA EL+ RT L+++EMF+A+L HDLR PLSA++ +A +L++T + Sbjct: 135 KANVFFELHRQKVALACELQDRTHALKLSEMFMAVLSHDLRGPLSAILASAAVLRKTQEP 194 Query: 121 EVAQKASQQILNGGKRMAKLIDNMLDLARARLAGGIPLVRASACLGEITERVVQEYQATY 180 + + ++ +RM ++I+++LD+ RAR GG+P+ A A LGE+ +R E++ ++ Sbjct: 195 DKVLAMADKVQTSAQRMGRMIEDLLDVTRARQFGGLPVRAAPADLGELVQRTAAEWRTSH 254 Query: 181 PGSVVERRIEGDDNGYWDGDRLGQVVANLLGNALQHGAADSPICIGIDGRSEHEVVMVIA 240 P V+E EGD G WD +RL QVV+NLLGNA+ HG P+ +DG + H VVM + Sbjct: 255 PERVIEVLQEGDLGGQWDAERLCQVVSNLLGNAIHHGDPQQPVQASLDGSAPHSVVMTVR 314 Query: 241 NRGVIPAALLPVIFDPFRGGEREAGRKEGLGLGLFIAQQIVKSHGGSISMSSDDQVQTMV 300 N G IP AL+P +FDPFRG ERE GR +GLGLGL+I QIV+ HGG+IS+ S D +T+ Sbjct: 315 NGGEIPQALIPQLFDPFRGREREPGRHQGLGLGLYIVHQIVQGHGGTISVCSRDG-RTIF 373 Query: 301 TVRLPR 306 V LPR Sbjct: 374 RVELPR 379 >ref|YP_972309.1| response regulator receiver sensor signal transduction histidine kinase [Acidovorax citrulli AAC00-1] gb|ABM34535.1| response regulator receiver sensor signal transduction histidine kinase [Acidovorax citrulli AAC00-1] Length = 390 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 161/306 (52%), Positives = 222/306 (72%), Gaps = 1/306 (0%) Query: 1 MPDMDGFELAELIRGSERTRNVPLIFVTAGVRDERRQFKGYESGAVDFLYKPIEPHILRN 60 MP+M+GFELAELIRGSERTR++PLIF+TAG RD+ QFKGYE+GAVDFLYKPI+PH+L N Sbjct: 75 MPEMNGFELAELIRGSERTRHIPLIFMTAGSRDQNWQFKGYENGAVDFLYKPIDPHMLVN 134 Query: 61 KADVFFQLYRQKQLLALELKQRTETLRMNEMFVAILGHDLRNPLSAVVMAATLLQRTYKE 120 KA+VFF+++RQK LA EL+ RT L+++EMF+A+L HDLR PLSA++ +A +L++T + Sbjct: 135 KANVFFEMHRQKVALACELQDRTHALKLSEMFMAVLSHDLRGPLSAILASAAVLRKTQEP 194 Query: 121 EVAQKASQQILNGGKRMAKLIDNMLDLARARLAGGIPLVRASACLGEITERVVQEYQATY 180 + + ++ +RM ++I+++LD+ R R GG+P+ A A LGE+ +R E++ ++ Sbjct: 195 DKVLAMADKVQTSAQRMGRMIEDLLDVTRVRQFGGLPVRAAPADLGELVQRTAAEWRTSH 254 Query: 181 PGSVVERRIEGDDNGYWDGDRLGQVVANLLGNALQHGAADSPICIGIDGRSEHEVVMVIA 240 P ++E EG G WD +RL QVV+NLLGNA+ HG P+ +DG + H VVM + Sbjct: 255 PDRIIEVWQEGGLGGQWDAERLCQVVSNLLGNAIHHGDPRQPVQAALDGTAPHSVVMTVR 314 Query: 241 NRGVIPAALLPVIFDPFRGGEREAGRKEGLGLGLFIAQQIVKSHGGSISMSSDDQVQTMV 300 N G IP AL+P +FDPFRG ERE GR +GLGLGL+I QIV HGG+IS+ S + T Sbjct: 315 NGGEIPQALIPQLFDPFRGREREPGRHQGLGLGLYIVHQIVHGHGGTISVRSGEG-STTF 373 Query: 301 TVRLPR 306 V LPR Sbjct: 374 RVELPR 379 >ref|YP_004488356.1| response regulator receiver sensor signal transduction histidine kinase [Delftia sp. Cs1-4] gb|AEF90001.1| response regulator receiver sensor signal transduction histidine kinase [Delftia sp. Cs1-4] Length = 392 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 162/306 (52%), Positives = 221/306 (72%), Gaps = 1/306 (0%) Query: 1 MPDMDGFELAELIRGSERTRNVPLIFVTAGVRDERRQFKGYESGAVDFLYKPIEPHILRN 60 MP+M+GFELAELIRGSERTR++PLIF+TAG R+ QF+GYESGAVDFLYKPI+PH+L Sbjct: 77 MPEMNGFELAELIRGSERTRHIPLIFMTAGSREHNWQFRGYESGAVDFLYKPIDPHMLTT 136 Query: 61 KADVFFQLYRQKQLLALELKQRTETLRMNEMFVAILGHDLRNPLSAVVMAATLLQRTYKE 120 KA+VFF+L+++KQ LA +L++RTE LR+NEMF+A+L HDLR PL ++ AAT+L R Sbjct: 137 KANVFFELHQRKQALAQQLQERTEALRINEMFMAVLSHDLRTPLQSIKAAATVLTRQPDP 196 Query: 121 EVAQKASQQILNGGKRMAKLIDNMLDLARARLAGGIPLVRASACLGEITERVVQEYQATY 180 ++++L+ +RM+++I+++LD+ R R A G+PL SA L + +R +QE + + Sbjct: 197 GKVANMAERMLSSSQRMSRMIEDLLDVTRIRQAEGLPLSPQSASLQTLLQRTLQEVETGF 256 Query: 181 PGSVVERRIEGDDNGYWDGDRLGQVVANLLGNALQHGAADSPICIGIDGRSEHEVVMVIA 240 P +E + G+ G WDG+RL QV+ NLLGNA+ HG P+ + DGR + V + + Sbjct: 257 PERRLESEMLGNLEGIWDGERLCQVLTNLLGNAMHHGDPAQPVQVTADGRQDDRVSITVR 316 Query: 241 NRGVIPAALLPVIFDPFRGGEREAGRKEGLGLGLFIAQQIVKSHGGSISMSSDDQVQTMV 300 N G IPA LLP +F+PFRGGER G+ +GLGLGLFIA QIV+SHGG I + S D V T Sbjct: 317 NGGTIPAELLPTLFNPFRGGERRPGQHQGLGLGLFIAHQIVRSHGGRIDVRSADGV-TSF 375 Query: 301 TVRLPR 306 V LPR Sbjct: 376 RVELPR 381