BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.4244.p         (154 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774880.1| hypothetical protein Hsero_1456 [Herbaspiril...   114   6e-24

>ref|YP_003774880.1| hypothetical protein Hsero_1456 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62972.1| hypothetical protein Hsero_1456 [Herbaspirillum seropedicae SmR1]
          Length = 157

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 64/148 (43%), Positives = 97/148 (65%), Gaps = 1/148 (0%)

Query: 1   MSTLNVVPDSPAATPYLAKARYLIVAGWVLFMISLGLPLQNNDLGYVALLYSFVFLTSIV 60
           ++ L V P  P   P+L  AR +IVAGW LFM+SL LP+  ++ G +A +YS +    + 
Sbjct: 5   LADLIVNPAKPDTAPHLKVARRVIVAGWGLFMLSLVLPVLGDEPGALAFIYSLMMPFFLF 64

Query: 61  ERPDPQLIWMGSYALVNTGLIASLFMTRKGRLISHPGCSLFFALAALDTFFAPLFA-KEF 119
           ++P    + M  Y++VN  LIASLF+    +L++ P  S+FF L ALDT + P    +EF
Sbjct: 65  DKPSWLGLAMSFYSVVNLSLIASLFIALGDKLLTRPATSVFFVLVALDTMWIPFTPDQEF 124

Query: 120 SHYPAFCCWSASAILVAAGMNLARLRQQ 147
           + +PAF CWSA+A++VA GMN+ARL+++
Sbjct: 125 ARHPAFWCWSAAAVMVAIGMNMARLKEK 152